Basic Information

Type: gene

Biological Identity

Species

rosa_samantha

Chromosome

Chr2A

Orthogroup ID

OG0001373

Physical Location & Seq

Genomic Coordinates Forward (+)

87199466 .. 87202541

Gene Structure 3076 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

Rh2AG655100.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 717 bp

ATGAATCTTGTGCAGCTAAAATATGGTGAAATTTGGTTTTTTTGGAGTGCCAAGCTCACAGCAGCAAAAGAAAAGTTTGGGAGAGAAATTCGTGTTTTTGAAACGGCAGCATCTTCTTCTTCGCAAAATGTAGAGTCCAATACTGAGGAGCCAGATGACCTTTATGAGTTCACTGCTGAGGATTATTATCGGATAATGAATACCAAGAAGGAAGATAAGTTCCTGAAAACACGAAAGATTAGAGAGGCAGAACAGGCAGCTCGCAGGTCAAGGATAACAAAGGCTGTGATCAGGGTTCGCTTTCCTGATAATACAACATTAGAGGCCACTTTTCATCCATCAGAAACAATTCAGAGCTTGGTTGATCTCCTTATGAAAGTGGTTGCTCGACCAGAATTATCATTCCACATATATACTACTCCTCCTAAGAAGCTGATAAAAGACATGACACAGGACTTTTACTCTGCTGGCTTTGCTCCTGGTGCGATTGTATATTTTTCATATGATATTCCAAAAGGTGATGATACTGCAGATGTCAAGTCAGGTCCTTTCCTTCACGACGAGATCATGTCTTTGAAAGGTCTGGAACTTGTGAGAGAGCATGCAGAGCCTGTTCAGACTGCACCAGAACCTATACACGAGGCACCACCCCCTGTTGTCCAAGAGAAGAAGCCTGCCGAGAAAAAATCTGTTAAGCCAAAGTGGCTGAAAATGTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0005488 GO:0005515 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0005654 GO:0005886 GO:0008150 GO:0009893 GO:0009987 GO:0010604 GO:0016020 GO:0016043 GO:0019222 GO:0019899 GO:0022411 GO:0031323 GO:0031325 GO:0031399 GO:0031401 GO:0031974 GO:0031981 GO:0032268 GO:0032270 GO:0032501 GO:0032502 GO:0032984 GO:0035265 GO:0040007 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043233 GO:0043933 GO:0044422 GO:0044424 GO:0044428 GO:0044446 GO:0044464 GO:0048518 GO:0048522 GO:0048589 GO:0050789 GO:0050794 GO:0051117 GO:0051171 GO:0051173 GO:0051246 GO:0051247 GO:0060255 GO:0065007 GO:0070013 GO:0071840 GO:0071944 GO:0080090

KEGG Pathways

Metabolic & Signaling

ko05202 map05202

Pfam Domains

Protein Families

UBX

Protein Analysis

238

Amino Acids

27.32

Weight (kDa)

6.99

Isoelectric Point (pI)

41.4

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
UBX	PF00789	93 - 150	5.7e-06	UBX domain

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Orthologous Genes (Group: OG0001373)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT3G27310
fragaria_vesca	FvH4_2g09210 FvH4_3g43800 FvH4_6g52650 FvH4_6g52820 FvH4_6g52860
malus_domestica	MD09G1017300.v1.1 MD10G1138200.v1.1 MD17G1018100.v1.1
prunus_persica	Prupe.3G299600_v2.0.a1 Prupe.3G299600_v2.0.a1 Prupe.8G176800_v2.0.a1
pyrus_communis	pycom05g12990 pycom111g01420
rosa_chinensis	RchiOBHm_Chr2g0174181 RchiOBHm_Chr2g0174441 RchiOBHm_Chr6g0265061
rosa_laevigata	RLG00000014212 RLG00000022254 RLG00000022266 RLG00000022272
rosa_multiflora	Rmu_sc0000954.1_g000001 Rmu_sc0001533.1_g000005 Rmu_sc0003649.1_g000013 Rmu_sc0003649.1_g000018 Rmu_sc0003649.1_g000021 Rmu_ssc0000198.1_g000003 Rmu_ssc0000359.1_g000079
rosa_roxburghii	Rroxscaffold_175G00432130 Rroxscaffold_2G00078080 Rroxscaffold_2G00078110 Rroxscaffold_2G00078140 Rroxscaffold_2G00078190 Rroxscaffold_2G00078380
rosa_rugosa	Rorug02G0575700 Rorug02G0577500 Rorug06G0013300
rosa_samantha	Rh2AG655100 Rh2AG658300 Rh2AG658500 Rh2BG666300 Rh2BG669300 Rh2BG669500 Rh2CG630500 Rh2CG632400 Rh2CG632500 Rh2DG680900 Rh2DG683100 Rh2DG683200
rosa_wichuraiana	Rw2G053770 Rw2G053910 Rw2G053930 Rw6G011780

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
Acc36I	ACCTGC	1 cut(s)	255
AccB1I	GGYRCC	1 cut(s)	643
AcsI	RAATTY	2 cut(s)	30, 87
AgsI	TTSAA	2 cut(s)	101, 577
AjnI	CCWGG	1 cut(s)	478
AloI	GAACNNNNNNTCC	2 cut(s)	203, 235
AluBI	AGCT	5 cut(s)	16, 55, 260, 357, 433
AluI	AGCT	5 cut(s)	16, 55, 260, 357, 433
AlwNI	CAGNNNCTG	1 cut(s)	611
AoxI	GGCC	1 cut(s)	324
ApeKI	GCWGC	4 cut(s)	13, 62, 107, 257
ApoI	RAATTY	2 cut(s)	30, 87
Asp700I	GAANNNNTTC	1 cut(s)	348
AspS9I	GGNCC	1 cut(s)	545
AsuHPI	GGTGA	2 cut(s)	38, 530
AvaII	GGWCC	1 cut(s)	545
BanI	GGYRCC	1 cut(s)	643
BauI	CACGAG	1 cut(s)	638
BbvCI	CCTCAGC	1 cut(s)	177
BbvI	GCAGC	4 cut(s)	25, 74, 119, 269
BccI	CCATC	1 cut(s)	346
BceAI	ACGGC	1 cut(s)	120
BciT130I	CCWGG	1 cut(s)	480
BclI	TGATCA	1 cut(s)	288
BfmI	CTRYAG	1 cut(s)	528
BfuAI	ACCTGC	1 cut(s)	255
BglI	GCCNNNNNGGC	1 cut(s)	703
BisI	GCNGC	4 cut(s)	14, 63, 108, 258
BlsI	GCNGC	4 cut(s)	15, 64, 109, 259
Bme1390I	CCNGG	1 cut(s)	480
Bme18I	GGWCC	1 cut(s)	545
BmgT120I	GGNCC	1 cut(s)	545
BmiI	GGNNCC	2 cut(s)	150, 645
BmrFI	CCNGG	1 cut(s)	480
BmsI	GCATC	1 cut(s)	119
Bpu10I	CCTNAGC	1 cut(s)	177
BsaBI	GATNNNNATC	1 cut(s)	186
BsaXI	ACNNNNNCTCC	2 cut(s)	406, 436
Bse8I	GATNNNNATC	1 cut(s)	186
BseBI	CCWGG	1 cut(s)	480
BseGI	GGATG	1 cut(s)	334
BseJI	GATNNNNATC	1 cut(s)	186
BseMII	CTCAG	2 cut(s)	135, 168
BseRI	GAGGAG	2 cut(s)	161, 411
BseXI	GCAGC	4 cut(s)	25, 74, 119, 269
BsgI	GTGCAG	2 cut(s)	32, 606
BshFI	GGCC	1 cut(s)	326
BshNI	GGYRCC	1 cut(s)	643
BsnI	GGCC	1 cut(s)	326
Bsp143I	GATC	3 cut(s)	288, 364, 564
BspANI	GGCC	1 cut(s)	326
BspCNI	CTCAG	2 cut(s)	136, 169
BspLI	GGNNCC	2 cut(s)	150, 645
BspMAI	CTGCAG	1 cut(s)	532
BspMI	ACCTGC	1 cut(s)	255
BspT107I	GGYRCC	1 cut(s)	643
BssMI	GATC	3 cut(s)	288, 364, 564
BssSI	CACGAG	1 cut(s)	638
Bst2BI	CACGAG	1 cut(s)	638
Bst2UI	CCWGG	1 cut(s)	480
BstC8I	GCNNGC	4 cut(s)	262, 469, 603, 675
BstDEI	CTNAG	3 cut(s)	144, 177, 426
BstF5I	GGATG	1 cut(s)	334
BstKTI	GATC	3 cut(s)	291, 367, 567
BstMBI	GATC	3 cut(s)	288, 364, 564
BstMWI	GCNNNNNNNGC	5 cut(s)	254, 473, 482, 607, 703
BstNI	CCWGG	1 cut(s)	480
BstNSI	RCATGY	1 cut(s)	605
BstSCI	CCNGG	1 cut(s)	478
BstSFI	CTRYAG	1 cut(s)	528
BstV1I	GCAGC	4 cut(s)	25, 74, 119, 269
BsuRI	GGCC	1 cut(s)	326
BtsCI	GGATG	1 cut(s)	334
BtsI	GCAGTG	1 cut(s)	171
BtsIMutI	CAGTG	1 cut(s)	171
BveI	ACCTGC	1 cut(s)	255
Cac8I	GCNNGC	4 cut(s)	262, 469, 603, 675
CaiI	CAGNNNCTG	1 cut(s)	611
Cfr13I	GGNCC	1 cut(s)	545
CviAII	CATG	3 cut(s)	445, 568, 602
DdeI	CTNAG	3 cut(s)	144, 177, 426
DpnI	GATC	3 cut(s)	290, 366, 566
DpnII	GATC	3 cut(s)	288, 364, 564
Eco47I	GGWCC	1 cut(s)	545
EcoO109I	RGGNCCY	1 cut(s)	545
EcoRII	CCWGG	1 cut(s)	478
FaeI	CATG	3 cut(s)	448, 571, 605
FatI	CATG	3 cut(s)	444, 567, 601
FauNDI	CATATG	1 cut(s)	502
FbaI	TGATCA	1 cut(s)	288
Fnu4HI	GCNGC	4 cut(s)	14, 63, 108, 258
FokI	GGATG	1 cut(s)	321
Fsp4HI	GCNGC	4 cut(s)	14, 63, 108, 258
GluI	GCNGC	4 cut(s)	14, 63, 108, 258
HaeIII	GGCC	1 cut(s)	326
Hin1II	CATG	3 cut(s)	448, 571, 605
HinfI	GANTC	2 cut(s)	4, 134
HphI	GGTGA	2 cut(s)	38, 530
Hpy166II	GTNNAC	1 cut(s)	171
Hpy188I	TCNGA	4 cut(s)	192, 343, 354, 618
Hpy188III	TCNNGA	4 cut(s)	223, 305, 557, 584
Hpy8I	GTNNAC	1 cut(s)	171
Hpy99I	CGWCG	1 cut(s)	563
HpyAV	CCTTC	2 cut(s)	202, 563
HpyCH4V	TGCA	4 cut(s)	13, 530, 605, 623
HpyF10VI	GCNNNNNNNGC	5 cut(s)	254, 473, 482, 607, 703
HpyF3I	CTNAG	3 cut(s)	144, 177, 426
Hsp92II	CATG	3 cut(s)	448, 571, 605
Ksp22I	TGATCA	1 cut(s)	288
Kzo9I	GATC	3 cut(s)	288, 364, 564
LmnI	GCTCC	2 cut(s)	148, 481
Lsp1109I	GCAGC	4 cut(s)	25, 74, 119, 269
LweI	GCATC	1 cut(s)	119
MalI	GATC	3 cut(s)	290, 366, 566
MboI	GATC	3 cut(s)	288, 364, 564
MboII	GAAGA	5 cut(s)	105, 108, 111, 224, 679
MluCI	AATT	4 cut(s)	30, 87, 348, 395
MlyI	GAGTC	1 cut(s)	143
MnlI	CCTC	6 cut(s)	139, 172, 238, 316, 432, 634
MroXI	GAANNNNTTC	1 cut(s)	348
MseI	TTAA	1 cut(s)	693
MspR9I	CCNGG	1 cut(s)	480
MvaI	CCWGG	1 cut(s)	480
MwoI	GCNNNNNNNGC	5 cut(s)	254, 473, 482, 607, 703
NdeI	CATATG	1 cut(s)	502
NdeII	GATC	3 cut(s)	288, 364, 564
NlaIII	CATG	3 cut(s)	448, 571, 605
NlaIV	GGNNCC	2 cut(s)	150, 645
NmeAIII	GCCGAG	1 cut(s)	703
NspI	RCATGY	1 cut(s)	605
PaeI	GCATGC	1 cut(s)	605
PdmI	GAANNNNTTC	1 cut(s)	348
PfeI	GAWTC	1 cut(s)	4
PkrI	GCNGC	4 cut(s)	15, 64, 109, 259
PleI	GAGTC	1 cut(s)	142
PpsI	GAGTC	1 cut(s)	142
PpuMI	RGGWCCY	1 cut(s)	545
Psp5II	RGGWCCY	1 cut(s)	545
Psp6I	CCWGG	1 cut(s)	478
PspGI	CCWGG	1 cut(s)	478
PspN4I	GGNNCC	2 cut(s)	150, 645
PspPI	GGNCC	1 cut(s)	545
PspPPI	RGGWCCY	1 cut(s)	545
PstI	CTGCAG	1 cut(s)	532
PstNI	CAGNNNCTG	1 cut(s)	611
SaqAI	TTAA	1 cut(s)	693
SatI	GCNGC	4 cut(s)	14, 63, 108, 258
Sau3AI	GATC	3 cut(s)	288, 364, 564
Sau96I	GGNCC	1 cut(s)	545
SchI	GAGTC	1 cut(s)	143
ScrFI	CCNGG	1 cut(s)	480
SfaNI	GCATC	1 cut(s)	119
SfcI	CTRYAG	1 cut(s)	528
SinI	GGWCC	1 cut(s)	545
SphI	GCATGC	1 cut(s)	605
Sse9I	AATT	4 cut(s)	30, 87, 348, 395
StyD4I	CCNGG	1 cut(s)	478
TaqI	TCGA	1 cut(s)	388
TasI	AATT	4 cut(s)	30, 87, 348, 395
TfiI	GAWTC	1 cut(s)	4
Tru1I	TTAA	1 cut(s)	693
Tru9I	TTAA	1 cut(s)	693
TscAI	CASTG	1 cut(s)	178
TseI	GCWGC	4 cut(s)	13, 62, 107, 257
TspDTI	ATGAA	5 cut(s)	17, 212, 323, 389, 489
TspRI	CASTG	1 cut(s)	178
VpaK11BI	GGWCC	1 cut(s)	545
XapI	RAATTY	2 cut(s)	30, 87
XceI	RCATGY	1 cut(s)	605
XmnI	GAANNNNTTC	1 cut(s)	348

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.