Basic Information

Type: gene

Biological Identity

Species

rosa_laevigata

Chromosome

Chr4

Orthogroup ID

OG0001373

Physical Location & Seq

Genomic Coordinates Forward (+)

81957531 .. 81961210

Gene Structure 3680 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

RLM00000022254

Sequence Viewer

CDS Protein Promoter (2k)

Length: 963 bp

ATGCGCCGTCGCCAATACCAGTCGAGGGGAACACCCCGCAACTGCTGCCGCCAGCCCACCACTTCATTCCTGGAAGACCAAGGCGGAGCTTCACTGCAACCACCAGCCCGCAGCAGAAGCCACTCCCGATCCCGAAGTAGACATCGGGAGCCGATCCCTATCCGGATCTCAAGAGACGATCCCAATCCCCGGCCAGACGCCAAGGATACGGACTTCGCCATGCGCGTGTTCTCTATGATCCTTGATTCTTCTTCTAAAAGAAGGAGGGTCACCAACATTAATCGCATGGAGGCCGAAGAAGCCAAGGCCAAGCTCACAGCAGCAAAAGAAAAGTTTGGGAGAGAAATTCGTGTTTTTGAAACAGCAGCATCTTCTTCTTCGCAAAATGTAGACTCCAATACTGAGGAGCCAGATGACCTTTATGAGTTCACTGCTGAGGATTATTATCGGATAATGAATACCAAGAAGGAAGATAAGTTCCTGAAAACACGAAAGATTAGAGAGGCAGAACAGGCAGCTCGCAGGTCAAGGATAACAAAGGCTGTGATCAGGGTTCGCTTTCCTGATAATACAACATTAGAGGTCACTTTTCATCCATCAGAAACAATTCAGAGCTTGGTTGATCTCCTCATGAAAGTGGTTGCTCGACCAGAATTATCGTTCCACATATATACTACTCCTCCTAAGAAGCTGATAAAAGACATGACACAGGACTTTTACTCTGCTGGCTTTGCTCCTGGTGCAATTGTATATTTTTCATATGATATTCCAAAAGGTGATGATACTGCAGATGTCAAGTCAGGTCCTTTCCTTCACGACGAGATCATGTCTTTGAAAGGTCTGGAACTTGCAGAGCCTGTTCAGACTGCACCAGAACCTATACACGAGGCACCACCCCCTGTTGTCCAAGAGAAGAAGCCTGCCGAGAAAAAATCTGTTAAGCCAAAGTGGCTGAAAATGTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0005488 GO:0005515 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0005654 GO:0005886 GO:0008150 GO:0009893 GO:0009987 GO:0010604 GO:0016020 GO:0016043 GO:0019222 GO:0019899 GO:0022411 GO:0031323 GO:0031325 GO:0031399 GO:0031401 GO:0031974 GO:0031981 GO:0032268 GO:0032270 GO:0032501 GO:0032502 GO:0032984 GO:0035265 GO:0040007 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043233 GO:0043933 GO:0044422 GO:0044424 GO:0044428 GO:0044446 GO:0044464 GO:0048518 GO:0048522 GO:0048589 GO:0050789 GO:0050794 GO:0051117 GO:0051171 GO:0051173 GO:0051246 GO:0051247 GO:0060255 GO:0065007 GO:0070013 GO:0071840 GO:0071944 GO:0080090

KEGG Pathways

Metabolic & Signaling

ko05202 map05202

Pfam Domains

Protein Families

UBX

Protein Analysis

321

Amino Acids

36.64

Weight (kDa)

9.51

Isoelectric Point (pI)

60.36

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0001373)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT3G27310
fragaria_vesca	FvH4_2g09210 FvH4_3g43800 FvH4_6g52650 FvH4_6g52820 FvH4_6g52860
malus_domestica	MD09G1017300.v1.1 MD10G1138200.v1.1 MD17G1018100.v1.1
prunus_persica	Prupe.3G299600_v2.0.a1 Prupe.3G299600_v2.0.a1 Prupe.8G176800_v2.0.a1
pyrus_communis	pycom05g12990 pycom111g01420
rosa_chinensis	RchiOBHm_Chr2g0174181 RchiOBHm_Chr2g0174441 RchiOBHm_Chr6g0265061
rosa_laevigata	RLG00000014212 RLG00000022254 RLG00000022266 RLG00000022272
rosa_multiflora	Rmu_sc0000954.1_g000001 Rmu_sc0001533.1_g000005 Rmu_sc0003649.1_g000013 Rmu_sc0003649.1_g000018 Rmu_sc0003649.1_g000021 Rmu_ssc0000198.1_g000003 Rmu_ssc0000359.1_g000079
rosa_roxburghii	Rroxscaffold_175G00432130 Rroxscaffold_2G00078080 Rroxscaffold_2G00078110 Rroxscaffold_2G00078140 Rroxscaffold_2G00078190 Rroxscaffold_2G00078380
rosa_rugosa	Rorug02G0575700 Rorug02G0577500 Rorug06G0013300
rosa_samantha	Rh2AG655100 Rh2AG658300 Rh2AG658500 Rh2BG666300 Rh2BG669300 Rh2BG669500 Rh2CG630500 Rh2CG632400 Rh2CG632500 Rh2DG680900 Rh2DG683100 Rh2DG683200
rosa_wichuraiana	Rw2G053770 Rw2G053910 Rw2G053930 Rw6G011780

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
Acc36I	ACCTGC	1 cut(s)	513
AccB1I	GGYRCC	1 cut(s)	889
AccI	GTMKAC	2 cut(s)	139, 390
AccII	CGCG	1 cut(s)	225
AccIII	TCCGGA	1 cut(s)	162
AciI	CCGC	4 cut(s)	37, 49, 84, 109
AclWI	GGATC	5 cut(s)	123, 148, 173, 173, 232
AcoI	YGGCCR	1 cut(s)	191
AcsI	RAATTY	1 cut(s)	345
AcyI	GRCGYC	1 cut(s)	198
AfiI	CCNNNNNNNGG	2 cut(s)	25, 189
AgsI	TTSAA	2 cut(s)	359, 835
AjnI	CCWGG	2 cut(s)	69, 736
AloI	GAACNNNNNNTCC	2 cut(s)	461, 493
AluBI	AGCT	5 cut(s)	89, 313, 518, 615, 691
AluI	AGCT	5 cut(s)	89, 313, 518, 615, 691
Alw26I	GTCTC	1 cut(s)	168
AlwI	GGATC	5 cut(s)	123, 148, 173, 173, 232
AlwNI	CAGNNNCTG	1 cut(s)	857
Aor13HI	TCCGGA	1 cut(s)	162
AoxI	GGCC	3 cut(s)	191, 291, 306
ApeKI	GCWGC	5 cut(s)	45, 111, 320, 365, 515
ApoI	RAATTY	1 cut(s)	345
AseI	ATTAAT	1 cut(s)	279
Asp700I	GAANNNNTTC	1 cut(s)	606
AspLEI	GCGC	2 cut(s)	6, 225
AspS9I	GGNCC	1 cut(s)	803
AsuC2I	CCSGG	1 cut(s)	190
AsuHPI	GGTGA	2 cut(s)	262, 788
AvaII	GGWCC	1 cut(s)	803
BanI	GGYRCC	1 cut(s)	889
BauI	CACGAG	1 cut(s)	884
BbsI	GAAGAC	1 cut(s)	81
BbvCI	CCTCAGC	1 cut(s)	435
BbvI	GCAGC	5 cut(s)	32, 123, 332, 377, 527
BccI	CCATC	1 cut(s)	604
BciT130I	CCWGG	2 cut(s)	71, 738
BciVI	GTATCC	1 cut(s)	199
BclI	TGATCA	1 cut(s)	546
BcnI	CCSGG	1 cut(s)	190
BcoDI	GTCTC	1 cut(s)	168
BfmI	CTRYAG	1 cut(s)	786
BfuAI	ACCTGC	1 cut(s)	513
BfuI	GTATCC	1 cut(s)	199
BglI	GCCNNNNNGGC	1 cut(s)	949
BisI	GCNGC	6 cut(s)	46, 49, 112, 321, 366, 516
BlsI	GCNGC	6 cut(s)	47, 50, 113, 322, 367, 517
Bme1390I	CCNGG	3 cut(s)	71, 190, 738
Bme18I	GGWCC	1 cut(s)	803
BmgT120I	GGNCC	1 cut(s)	803
BmiI	GGNNCC	3 cut(s)	150, 408, 891
BmrFI	CCNGG	3 cut(s)	71, 190, 738
BmsI	GCATC	1 cut(s)	377
BpiI	GAAGAC	1 cut(s)	81
Bpu10I	CCTNAGC	1 cut(s)	435
BpuEI	CTTGAG	1 cut(s)	154
BpuMI	CCSGG	1 cut(s)	190
BsaBI	GATNNNNATC	3 cut(s)	158, 183, 444
BsaHI	GRCGYC	1 cut(s)	198
BsaJI	CCNNGG	4 cut(s)	79, 188, 201, 303
BsaWI	WCCGGW	1 cut(s)	162
BsaXI	ACNNNNNCTCC	2 cut(s)	664, 694
Bsc4I	CCNNNNNNNGG	2 cut(s)	25, 189
Bse1I	ACTGG	1 cut(s)	19
Bse8I	GATNNNNATC	3 cut(s)	158, 183, 444
BseAI	TCCGGA	1 cut(s)	162
BseBI	CCWGG	2 cut(s)	71, 738
BseDI	CCNNGG	4 cut(s)	79, 188, 201, 303
BseGI	GGATG	1 cut(s)	592
BseJI	GATNNNNATC	3 cut(s)	158, 183, 444
BseLI	CCNNNNNNNGG	2 cut(s)	25, 189
BseMII	CTCAG	2 cut(s)	393, 426
BseNI	ACTGG	1 cut(s)	19
BseRI	GAGGAG	3 cut(s)	419, 617, 669
BseXI	GCAGC	5 cut(s)	32, 123, 332, 377, 527
BsgI	GTGCAG	1 cut(s)	852
Bsh1236I	CGCG	1 cut(s)	225
BshFI	GGCC	3 cut(s)	193, 293, 308
BshNI	GGYRCC	1 cut(s)	889
BsiSI	CCGG	2 cut(s)	163, 190
BslI	CCNNNNNNNGG	2 cut(s)	25, 189
BsmAI	GTCTC	1 cut(s)	168
BsmBI	CGTCTC	1 cut(s)	168
BsnI	GGCC	3 cut(s)	193, 293, 308
Bsp13I	TCCGGA	1 cut(s)	162
Bsp143I	GATC	8 cut(s)	128, 153, 165, 178, 237, 546, 622, 822
BspACI	CCGC	4 cut(s)	37, 49, 84, 109
BspANI	GGCC	3 cut(s)	193, 293, 308
BspCNI	CTCAG	2 cut(s)	394, 427
BspEI	TCCGGA	1 cut(s)	162
BspFNI	CGCG	1 cut(s)	225
BspHI	TCATGA	1 cut(s)	630
BspLI	GGNNCC	3 cut(s)	150, 408, 891
BspMAI	CTGCAG	1 cut(s)	790
BspMI	ACCTGC	1 cut(s)	513
BspPI	GGATC	5 cut(s)	123, 148, 173, 173, 232
BspT107I	GGYRCC	1 cut(s)	889
BsrI	ACTGG	1 cut(s)	19
BssECI	CCNNGG	4 cut(s)	79, 188, 201, 303
BssMI	GATC	8 cut(s)	128, 153, 165, 178, 237, 546, 622, 822
BssNI	GRCGYC	1 cut(s)	198
BssSI	CACGAG	1 cut(s)	884
BssT1I	CCWWGG	3 cut(s)	79, 201, 303
Bst2BI	CACGAG	1 cut(s)	884
Bst2UI	CCWGG	2 cut(s)	71, 738
BstACI	GRCGYC	1 cut(s)	198
BstAPI	GCANNNNNTGC	1 cut(s)	45
BstC8I	GCNNGC	5 cut(s)	53, 109, 520, 727, 921
BstDEI	CTNAG	3 cut(s)	402, 435, 684
BstEII	GGTNACC	1 cut(s)	268
BstF5I	GGATG	1 cut(s)	592
BstFNI	CGCG	1 cut(s)	225
BstHHI	GCGC	2 cut(s)	6, 225
BstKTI	GATC	8 cut(s)	131, 156, 168, 181, 240, 549, 625, 825
BstMAI	GTCTC	1 cut(s)	168
BstMBI	GATC	8 cut(s)	128, 153, 165, 178, 237, 546, 622, 822
BstMWI	GCNNNNNNNGC	7 cut(s)	45, 117, 299, 512, 731, 740, 949
BstNI	CCWGG	2 cut(s)	71, 738
BstPI	GGTNACC	1 cut(s)	268
BstSCI	CCNGG	3 cut(s)	69, 188, 736
BstSFI	CTRYAG	1 cut(s)	786
BstUI	CGCG	1 cut(s)	225
BstV1I	GCAGC	5 cut(s)	32, 123, 332, 377, 527
BstV2I	GAAGAC	1 cut(s)	81
BstX2I	RGATCY	1 cut(s)	165
BstYI	RGATCY	1 cut(s)	165
BsuI	GTATCC	1 cut(s)	199
BsuRI	GGCC	3 cut(s)	193, 293, 308
BtsCI	GGATG	1 cut(s)	592
BtsI	GCAGTG	2 cut(s)	92, 429
BtsIMutI	CAGTG	2 cut(s)	92, 429
BveI	ACCTGC	1 cut(s)	513
Cac8I	GCNNGC	5 cut(s)	53, 109, 520, 727, 921
CaiI	CAGNNNCTG	1 cut(s)	857
CciI	TCATGA	1 cut(s)	630
CfoI	GCGC	2 cut(s)	6, 225
Cfr13I	GGNCC	1 cut(s)	803
CseI	GACGC	1 cut(s)	206
CviAII	CATG	5 cut(s)	220, 286, 631, 703, 826
DdeI	CTNAG	3 cut(s)	402, 435, 684
DpnI	GATC	8 cut(s)	130, 155, 167, 180, 239, 548, 624, 824
DpnII	GATC	8 cut(s)	128, 153, 165, 178, 237, 546, 622, 822
EaeI	YGGCCR	1 cut(s)	191
EciI	GGCGGA	1 cut(s)	99
Eco130I	CCWWGG	3 cut(s)	79, 201, 303
Eco47I	GGWCC	1 cut(s)	803
Eco91I	GGTNACC	1 cut(s)	268
EcoO109I	RGGNCCY	1 cut(s)	803
EcoO65I	GGTNACC	1 cut(s)	268
EcoRII	CCWGG	2 cut(s)	69, 736
EcoT14I	CCWWGG	3 cut(s)	79, 201, 303
ErhI	CCWWGG	3 cut(s)	79, 201, 303
Esp3I	CGTCTC	1 cut(s)	168
FaeI	CATG	5 cut(s)	223, 289, 634, 706, 829
FatI	CATG	5 cut(s)	219, 285, 630, 702, 825
FauI	CCCGC	2 cut(s)	44, 116
FauNDI	CATATG	1 cut(s)	760
FbaI	TGATCA	1 cut(s)	546
FblI	GTMKAC	2 cut(s)	139, 390
Fnu4HI	GCNGC	6 cut(s)	46, 49, 112, 321, 366, 516
FokI	GGATG	1 cut(s)	579
Fsp4HI	GCNGC	6 cut(s)	46, 49, 112, 321, 366, 516
GlaI	GCGC	2 cut(s)	5, 224
GluI	GCNGC	6 cut(s)	46, 49, 112, 321, 366, 516
HaeIII	GGCC	3 cut(s)	193, 293, 308
HapII	CCGG	2 cut(s)	163, 190
HgaI	GACGC	1 cut(s)	206
HhaI	GCGC	2 cut(s)	6, 225
Hin1I	GRCGYC	1 cut(s)	198
Hin1II	CATG	5 cut(s)	223, 289, 634, 706, 829
Hin6I	GCGC	2 cut(s)	4, 223
HinP1I	GCGC	2 cut(s)	4, 223
HinfI	GANTC	2 cut(s)	245, 392
HpaII	CCGG	2 cut(s)	163, 190
HphI	GGTGA	2 cut(s)	262, 788
Hpy166II	GTNNAC	3 cut(s)	140, 391, 429
Hpy188I	TCNGA	4 cut(s)	450, 601, 612, 864
Hpy8I	GTNNAC	3 cut(s)	140, 391, 429
Hpy99I	CGWCG	2 cut(s)	12, 821
HpyAV	CCTTC	3 cut(s)	255, 460, 821
HpyCH4V	TGCA	5 cut(s)	97, 743, 788, 851, 869
HpyF10VI	GCNNNNNNNGC	7 cut(s)	45, 117, 299, 512, 731, 740, 949
HpyF3I	CTNAG	3 cut(s)	402, 435, 684
Hsp92I	GRCGYC	1 cut(s)	198
Hsp92II	CATG	5 cut(s)	223, 289, 634, 706, 829
HspAI	GCGC	2 cut(s)	4, 223
Kpn2I	TCCGGA	1 cut(s)	162
Ksp22I	TGATCA	1 cut(s)	546
Kzo9I	GATC	8 cut(s)	128, 153, 165, 178, 237, 546, 622, 822
LmnI	GCTCC	4 cut(s)	86, 148, 406, 739
Lsp1109I	GCAGC	5 cut(s)	32, 123, 332, 377, 527
LweI	GCATC	1 cut(s)	377
MaeIII	GTNAC	2 cut(s)	268, 583
MalI	GATC	8 cut(s)	130, 155, 167, 180, 239, 548, 624, 824
MboI	GATC	8 cut(s)	128, 153, 165, 178, 237, 546, 622, 822
MboII	GAAGA	9 cut(s)	86, 240, 243, 308, 363, 366, 369, 482, 925
MfeI	CAATTG	1 cut(s)	744
MflI	RGATCY	1 cut(s)	165
MluCI	AATT	4 cut(s)	345, 606, 653, 744
MlyI	GAGTC	1 cut(s)	386
MroI	TCCGGA	1 cut(s)	162
MroXI	GAANNNNTTC	1 cut(s)	606
MseI	TTAA	2 cut(s)	279, 939
MslI	CAYNNNNRTG	2 cut(s)	224, 635
MspI	CCGG	2 cut(s)	163, 190
MspR9I	CCNGG	3 cut(s)	71, 190, 738
MunI	CAATTG	1 cut(s)	744
MvaI	CCWGG	2 cut(s)	71, 738
MvnI	CGCG	1 cut(s)	225
MwoI	GCNNNNNNNGC	7 cut(s)	45, 117, 299, 512, 731, 740, 949
NciI	CCSGG	1 cut(s)	190
NdeI	CATATG	1 cut(s)	760
NdeII	GATC	8 cut(s)	128, 153, 165, 178, 237, 546, 622, 822
NlaIII	CATG	5 cut(s)	223, 289, 634, 706, 829
NlaIV	GGNNCC	3 cut(s)	150, 408, 891
NmeAIII	GCCGAG	1 cut(s)	949
NmuCI	GTSAC	2 cut(s)	268, 583
PagI	TCATGA	1 cut(s)	630
PcsI	WCGNNNNNNNCGW	1 cut(s)	222
PdmI	GAANNNNTTC	1 cut(s)	606
PfeI	GAWTC	1 cut(s)	245
PfoI	TCCNGGA	1 cut(s)	69
PkrI	GCNGC	6 cut(s)	47, 50, 113, 322, 367, 517
PleI	GAGTC	1 cut(s)	386
PpsI	GAGTC	1 cut(s)	386
PpuMI	RGGWCCY	1 cut(s)	803
PshBI	ATTAAT	1 cut(s)	279
Psp5II	RGGWCCY	1 cut(s)	803
Psp6I	CCWGG	2 cut(s)	69, 736
PspEI	GGTNACC	1 cut(s)	268
PspGI	CCWGG	2 cut(s)	69, 736
PspN4I	GGNNCC	3 cut(s)	150, 408, 891
PspPI	GGNCC	1 cut(s)	803
PspPPI	RGGWCCY	1 cut(s)	803
PstI	CTGCAG	1 cut(s)	790
PstNI	CAGNNNCTG	1 cut(s)	857
PsuI	RGATCY	1 cut(s)	165
RseI	CAYNNNNRTG	2 cut(s)	224, 635
SaqAI	TTAA	2 cut(s)	279, 939
SatI	GCNGC	6 cut(s)	46, 49, 112, 321, 366, 516
Sau3AI	GATC	8 cut(s)	128, 153, 165, 178, 237, 546, 622, 822
Sau96I	GGNCC	1 cut(s)	803
SchI	GAGTC	1 cut(s)	386
ScrFI	CCNGG	3 cut(s)	71, 190, 738
SfaNI	GCATC	1 cut(s)	377
SfcI	CTRYAG	1 cut(s)	786
SinI	GGWCC	1 cut(s)	803
SmiMI	CAYNNNNRTG	2 cut(s)	224, 635
SmlI	CTYRAG	1 cut(s)	169
SmoI	CTYRAG	1 cut(s)	169
Sse9I	AATT	4 cut(s)	345, 606, 653, 744
SsiI	CCGC	4 cut(s)	37, 49, 84, 109
StyD4I	CCNGG	3 cut(s)	69, 188, 736
StyI	CCWWGG	3 cut(s)	79, 201, 303
TaqI	TCGA	2 cut(s)	23, 646
TasI	AATT	4 cut(s)	345, 606, 653, 744
TauI	GCSGC	1 cut(s)	51
TfiI	GAWTC	1 cut(s)	245
Tru1I	TTAA	2 cut(s)	279, 939
Tru9I	TTAA	2 cut(s)	279, 939
TscAI	CASTG	2 cut(s)	99, 436
TseFI	GTSAC	2 cut(s)	268, 583
TseI	GCWGC	5 cut(s)	45, 111, 320, 365, 515
Tsp45I	GTSAC	2 cut(s)	268, 583
TspDTI	ATGAA	5 cut(s)	54, 470, 581, 647, 747
TspGWI	ACGGA	1 cut(s)	224
TspRI	CASTG	2 cut(s)	99, 436
VpaK11BI	GGWCC	1 cut(s)	803
VspI	ATTAAT	1 cut(s)	279
XapI	RAATTY	1 cut(s)	345
XcmI	CCANNNNNNNNNTGG	1 cut(s)	67
XmiI	GTMKAC	2 cut(s)	139, 390
XmnI	GAANNNNTTC	1 cut(s)	606

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.