Basic Information

Type: gene

Biological Identity

Species

rosa_multiflora

Chromosome

Rmu_sc0000954.1

Orthogroup ID

OG0001373

Physical Location & Seq

Genomic Coordinates Forward (+)

1 .. 1374

Gene Structure 1374 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rmu_sc0000954.1_g000001.1.cds

Sequence Viewer

CDS Protein Promoter (2k)

Length: 503 bp

ataagttcctgaaaacacgaaagattagagaggcagaacaggcagctcgcaggtcaaggataacaaaggctgtgatcagggttcgctttcctgataatacaacattagaggccacttttcatccatcagaaacaattcagagcttggttgatctccttatgaaagtggttgctcgaccagaattatcattccacatatatactactcctcctaagaagctgataaaagacatgacacaggacttttactctgctggctttgctcctggtgcgattgtatatttttcatatgatattccaaaaggtgatgagactgcagatgtcaagtcaggtcctttcctccacgacgagatcatgtctttgaaaggtctggaacttgtgaaagagcatgcagagcctgttcagactgcaccagaacctatacacgaggcaccaccccctgttgtccaagagaagaagcctgccgagaaaaaatctgttaagccaaagtggctgaaaatgtga

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0005488 GO:0005515 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0005654 GO:0005886 GO:0008150 GO:0009893 GO:0009987 GO:0010604 GO:0016020 GO:0016043 GO:0019222 GO:0019899 GO:0022411 GO:0031323 GO:0031325 GO:0031399 GO:0031401 GO:0031974 GO:0031981 GO:0032268 GO:0032270 GO:0032501 GO:0032502 GO:0032984 GO:0035265 GO:0040007 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043233 GO:0043933 GO:0044422 GO:0044424 GO:0044428 GO:0044446 GO:0044464 GO:0048518 GO:0048522 GO:0048589 GO:0050789 GO:0050794 GO:0051117 GO:0051171 GO:0051173 GO:0051246 GO:0051247 GO:0060255 GO:0065007 GO:0070013 GO:0071840 GO:0071944 GO:0080090

KEGG Pathways

Metabolic & Signaling

ko05202 map05202

Pfam Domains

Protein Families

UBX

Protein Analysis

166

Amino Acids

18.82

Weight (kDa)

9.32

Isoelectric Point (pI)

45.74

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

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Align Labels (Cladogram)

Image

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Publication-ready

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Orthologous Genes (Group: OG0001373)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT3G27310
fragaria_vesca	FvH4_2g09210 FvH4_3g43800 FvH4_6g52650 FvH4_6g52820 FvH4_6g52860
malus_domestica	MD09G1017300.v1.1 MD10G1138200.v1.1 MD17G1018100.v1.1
prunus_persica	Prupe.3G299600_v2.0.a1 Prupe.3G299600_v2.0.a1 Prupe.8G176800_v2.0.a1
pyrus_communis	pycom05g12990 pycom111g01420
rosa_chinensis	RchiOBHm_Chr2g0174181 RchiOBHm_Chr2g0174441 RchiOBHm_Chr6g0265061
rosa_laevigata	RLG00000014212 RLG00000022254 RLG00000022266 RLG00000022272
rosa_multiflora	Rmu_sc0000954.1_g000001 Rmu_sc0001533.1_g000005 Rmu_sc0003649.1_g000013 Rmu_sc0003649.1_g000018 Rmu_sc0003649.1_g000021 Rmu_ssc0000198.1_g000003 Rmu_ssc0000359.1_g000079
rosa_roxburghii	Rroxscaffold_175G00432130 Rroxscaffold_2G00078080 Rroxscaffold_2G00078110 Rroxscaffold_2G00078140 Rroxscaffold_2G00078190 Rroxscaffold_2G00078380
rosa_rugosa	Rorug02G0575700 Rorug02G0577500 Rorug06G0013300
rosa_samantha	Rh2AG655100 Rh2AG658300 Rh2AG658500 Rh2BG666300 Rh2BG669300 Rh2BG669500 Rh2CG630500 Rh2CG632400 Rh2CG632500 Rh2DG680900 Rh2DG683100 Rh2DG683200
rosa_wichuraiana	Rw2G053770 Rw2G053910 Rw2G053930 Rw6G011780

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
Acc36I	ACCTGC	1 cut(s)	41
AccB1I	GGYRCC	1 cut(s)	429
AgsI	TTSAA	1 cut(s)	363
AjnI	CCWGG	1 cut(s)	264
AluBI	AGCT	3 cut(s)	46, 143, 219
AluI	AGCT	3 cut(s)	46, 143, 219
Alw26I	GTCTC	1 cut(s)	304
AlwNI	CAGNNNCTG	1 cut(s)	397
AoxI	GGCC	1 cut(s)	110
ApeKI	GCWGC	1 cut(s)	43
Asp700I	GAANNNNTTC	1 cut(s)	134
AspS9I	GGNCC	1 cut(s)	331
AsuHPI	GGTGA	1 cut(s)	316
AvaII	GGWCC	1 cut(s)	331
BanI	GGYRCC	1 cut(s)	429
BauI	CACGAG	1 cut(s)	424
BbvI	GCAGC	1 cut(s)	55
BccI	CCATC	1 cut(s)	132
BciT130I	CCWGG	1 cut(s)	266
BclI	TGATCA	1 cut(s)	74
BcoDI	GTCTC	1 cut(s)	304
BfmI	CTRYAG	1 cut(s)	314
BfuAI	ACCTGC	1 cut(s)	41
BglI	GCCNNNNNGGC	1 cut(s)	489
BisI	GCNGC	1 cut(s)	44
BlsI	GCNGC	1 cut(s)	45
Bme1390I	CCNGG	1 cut(s)	266
Bme18I	GGWCC	1 cut(s)	331
BmgT120I	GGNCC	1 cut(s)	331
BmiI	GGNNCC	1 cut(s)	431
BmrFI	CCNGG	1 cut(s)	266
BsaXI	ACNNNNNCTCC	2 cut(s)	192, 222
BseBI	CCWGG	1 cut(s)	266
BseGI	GGATG	1 cut(s)	120
BseRI	GAGGAG	1 cut(s)	197
BseXI	GCAGC	1 cut(s)	55
BsgI	GTGCAG	1 cut(s)	392
BshFI	GGCC	1 cut(s)	112
BshNI	GGYRCC	1 cut(s)	429
BsmAI	GTCTC	1 cut(s)	304
BsnI	GGCC	1 cut(s)	112
Bsp143I	GATC	3 cut(s)	74, 150, 350
BspANI	GGCC	1 cut(s)	112
BspLI	GGNNCC	1 cut(s)	431
BspMAI	CTGCAG	1 cut(s)	318
BspMI	ACCTGC	1 cut(s)	41
BspT107I	GGYRCC	1 cut(s)	429
BssMI	GATC	3 cut(s)	74, 150, 350
BssSI	CACGAG	1 cut(s)	424
Bst2BI	CACGAG	1 cut(s)	424
Bst2UI	CCWGG	1 cut(s)	266
BstC8I	GCNNGC	4 cut(s)	48, 255, 389, 461
BstDEI	CTNAG	1 cut(s)	212
BstF5I	GGATG	1 cut(s)	120
BstKTI	GATC	3 cut(s)	77, 153, 353
BstMAI	GTCTC	1 cut(s)	304
BstMBI	GATC	3 cut(s)	74, 150, 350
BstMWI	GCNNNNNNNGC	5 cut(s)	40, 259, 268, 393, 489
BstNI	CCWGG	1 cut(s)	266
BstNSI	RCATGY	1 cut(s)	391
BstSCI	CCNGG	1 cut(s)	264
BstSFI	CTRYAG	1 cut(s)	314
BstV1I	GCAGC	1 cut(s)	55
BsuRI	GGCC	1 cut(s)	112
BtsCI	GGATG	1 cut(s)	120
BveI	ACCTGC	1 cut(s)	41
Cac8I	GCNNGC	4 cut(s)	48, 255, 389, 461
CaiI	CAGNNNCTG	1 cut(s)	397
Cfr13I	GGNCC	1 cut(s)	331
CviAII	CATG	3 cut(s)	231, 354, 388
DdeI	CTNAG	1 cut(s)	212
DpnI	GATC	3 cut(s)	76, 152, 352
DpnII	GATC	3 cut(s)	74, 150, 350
Eco47I	GGWCC	1 cut(s)	331
EcoO109I	RGGNCCY	1 cut(s)	331
EcoRII	CCWGG	1 cut(s)	264
FaeI	CATG	3 cut(s)	234, 357, 391
FatI	CATG	3 cut(s)	230, 353, 387
FauNDI	CATATG	1 cut(s)	288
FbaI	TGATCA	1 cut(s)	74
Fnu4HI	GCNGC	1 cut(s)	44
FokI	GGATG	1 cut(s)	107
Fsp4HI	GCNGC	1 cut(s)	44
GluI	GCNGC	1 cut(s)	44
HaeIII	GGCC	1 cut(s)	112
Hin1II	CATG	3 cut(s)	234, 357, 391
HphI	GGTGA	1 cut(s)	316
Hpy188I	TCNGA	3 cut(s)	129, 140, 404
Hpy188III	TCNNGA	3 cut(s)	9, 91, 370
Hpy99I	CGWCG	1 cut(s)	349
HpyCH4V	TGCA	3 cut(s)	316, 391, 409
HpyF10VI	GCNNNNNNNGC	5 cut(s)	40, 259, 268, 393, 489
HpyF3I	CTNAG	1 cut(s)	212
Hsp92II	CATG	3 cut(s)	234, 357, 391
Ksp22I	TGATCA	1 cut(s)	74
Kzo9I	GATC	3 cut(s)	74, 150, 350
LmnI	GCTCC	1 cut(s)	267
Lsp1109I	GCAGC	1 cut(s)	55
MalI	GATC	3 cut(s)	76, 152, 352
MboI	GATC	3 cut(s)	74, 150, 350
MboII	GAAGA	1 cut(s)	465
MluCI	AATT	2 cut(s)	134, 181
MnlI	CCTC	5 cut(s)	24, 102, 218, 349, 420
MroXI	GAANNNNTTC	1 cut(s)	134
MseI	TTAA	1 cut(s)	479
MspR9I	CCNGG	1 cut(s)	266
MvaI	CCWGG	1 cut(s)	266
MwoI	GCNNNNNNNGC	5 cut(s)	40, 259, 268, 393, 489
NdeI	CATATG	1 cut(s)	288
NdeII	GATC	3 cut(s)	74, 150, 350
NlaIII	CATG	3 cut(s)	234, 357, 391
NlaIV	GGNNCC	1 cut(s)	431
NmeAIII	GCCGAG	1 cut(s)	489
NspI	RCATGY	1 cut(s)	391
PaeI	GCATGC	1 cut(s)	391
PdmI	GAANNNNTTC	1 cut(s)	134
PkrI	GCNGC	1 cut(s)	45
PpuMI	RGGWCCY	1 cut(s)	331
Psp5II	RGGWCCY	1 cut(s)	331
Psp6I	CCWGG	1 cut(s)	264
PspGI	CCWGG	1 cut(s)	264
PspN4I	GGNNCC	1 cut(s)	431
PspPI	GGNCC	1 cut(s)	331
PspPPI	RGGWCCY	1 cut(s)	331
PstI	CTGCAG	1 cut(s)	318
PstNI	CAGNNNCTG	1 cut(s)	397
SaqAI	TTAA	1 cut(s)	479
SatI	GCNGC	1 cut(s)	44
Sau3AI	GATC	3 cut(s)	74, 150, 350
Sau96I	GGNCC	1 cut(s)	331
ScrFI	CCNGG	1 cut(s)	266
SetI	ASST	8 cut(s)	48, 55, 145, 221, 306, 333, 369, 420
SfcI	CTRYAG	1 cut(s)	314
SinI	GGWCC	1 cut(s)	331
SphI	GCATGC	1 cut(s)	391
Sse9I	AATT	2 cut(s)	134, 181
StyD4I	CCNGG	1 cut(s)	264
TaqI	TCGA	1 cut(s)	174
TasI	AATT	2 cut(s)	134, 181
Tru1I	TTAA	1 cut(s)	479
Tru9I	TTAA	1 cut(s)	479
TseI	GCWGC	1 cut(s)	43
TspDTI	ATGAA	3 cut(s)	109, 175, 275
VpaK11BI	GGWCC	1 cut(s)	331
XceI	RCATGY	1 cut(s)	391
XmnI	GAANNNNTTC	1 cut(s)	134

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.