Rroxscaffold_2G00078110

No description available

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_roxburghii
GWHEROQ00000002
OG0001373
Physical Location & Seq
Forward (+)
1525543 .. 1526685
1143 bp
Loading structure...
UTR
Exon/CDS
Intron
Rroxscaffold_2G00078110.1

Sequence Viewer

Length: 1143 bp
ATGGAACACCGAGCGCCGAATCTCCCACCACCCAAGTCTCCTGGCGGCTCATCATCTTCTGAAGAAGATTCTGAAGAAGGACCCTGGACCATTCTCAATCACATTCCTCCGGGTCCAGGAGAAGACCGTATGGTTCGCCAAGAAAGAGTCTTTCTTTTTCAGGGAAATCCAAGAACCGAACCCAGAGTGTTGCATCTGTTCTCCGATGGGAGTTTCAGTCTTCAGAATAAGGCTCGTCCCTCTGCATTAGACCAACTTGAATTGGTTGGGCATTCTAGAGGACAAGTCTGTTTTCGAAATCTAAGCCAGAGACAGATCTTGGTTTGGGATTTGGAAGCTCAAAGAGTAAGGAAAGTGCTTGATGATGTGACCGAGGGAGGAGAATCGTCCTATGGATTCGGGCACAGAAACGGGGGCTTATTCATGGTGGTTAGACTTGGACGCCAACCTCTATTTCACAACATGCAGGATTACGGATACTACCTCCATACCTTTATCGAGAGAGAAAGAGAACAGTGGACCAGAGTTGAGTTTAGGTTGGAGGCTCTGTATGATTTTAGAACCTTTGGACCTGCGATATTGGTCTCTCAGAATGGCATGCTTTACTGGAAAGCGGTGAGTGTAGATGATCCTGGAGATGATCTTGATAATGTGGAGTTAGTGCTGGGCCATGGGTTCAAAGGTCAACTGGCTGCGTCAGTATATGTACCTCCTGAAAATCAAGAAGGACATTCTTATTTGCACATTTGGGTCCTCCTGAAAGAACTTGCCATGTATCATTGGCACAAGCTAGTGGCTTTGCCTTGCCATGATTATACTAGTGATGGTGAAGTGTTTGTGCCCCTAGTATTTTACTATGACAGAGAAGGTGGTGCAATCAACCTTCTCGTGCACAGGAACAAGGAGGAAGTCGTGCATATGATACCAGCCAAGAAGCGGGTTAATCCATTAGCTGATGCTGAGTTCAGGAGAGTTCCTGTACCCTCAGCCATACCTTCAGGCATGAAAATGCAGCTTGGATCCCGTAGGATGTTTCAAGCAACTCCACTTGTGAAGCCTATGGGAAACAGGGCACTTGCAGAGGACAATAACACAGATGATGATGATGATGATGATGAAGGTATTGCTTTCGCTCTTGACTAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
No domains found.

Protein Analysis

380

Amino Acids

43.19

Weight (kDa)

5.47

Isoelectric Point (pI)

46.52

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
Acc36I ACCTGC 1 cut(s) 580
AciI CCGC 3 cut(s) 45, 614, 937
AclWI GGATC 3 cut(s) 623, 1014, 1027
AcuI CTGAAG 4 cut(s) 81, 93, 206, 981
AcyI GRCGYC 1 cut(s) 442
AfaI GTAC 2 cut(s) 708, 981
AfiI CCNNNNNNNGG 2 cut(s) 116, 936
AgsI TTSAA 3 cut(s) 260, 679, 1037
AhlI ACTAGT 1 cut(s) 818
AjnI CCWGG 4 cut(s) 40, 83, 115, 631
AjuI GAANNNNNNNTTGG 2 cut(s) 438, 470
AluBI AGCT 4 cut(s) 338, 790, 953, 1015
AluI AGCT 4 cut(s) 338, 790, 953, 1015
Alw21I GWGCWC 1 cut(s) 894
Alw26I GTCTC 3 cut(s) 42, 304, 589
Alw44I GTGCAC 1 cut(s) 890
AlwI GGATC 3 cut(s) 623, 1014, 1027
AoxI GGCC 1 cut(s) 667
ApaLI GTGCAC 1 cut(s) 890
ApeKI GCWGC 2 cut(s) 692, 1012
AspLEI GCGC 1 cut(s) 16
AspS9I GGNCC 7 cut(s) 80, 87, 113, 519, 569, 667, 751
AsuC2I CCSGG 1 cut(s) 111
AsuHPI GGTGA 2 cut(s) 628, 839
AsuII TTCGAA 1 cut(s) 295
AvaII GGWCC 6 cut(s) 80, 87, 113, 519, 569, 751
BaeGI GKGCMC 4 cut(s) 405, 843, 894, 1075
BamHI GGATCC 1 cut(s) 1019
BauI CACGAG 1 cut(s) 887
BbsI GAAGAC 2 cut(s) 129, 212
Bbv12I GWGCWC 1 cut(s) 894
BbvCI CCTCAGC 1 cut(s) 985
BbvI GCAGC 2 cut(s) 679, 1024
BccI CCATC 2 cut(s) 200, 818
BciT130I CCWGG 4 cut(s) 42, 85, 117, 633
BciVI GTATCC 1 cut(s) 470
BcnI CCSGG 1 cut(s) 111
BcoDI GTCTC 3 cut(s) 42, 304, 589
BcuI ACTAGT 1 cut(s) 818
BfaI CTAG 4 cut(s) 276, 791, 819, 845
BfoI RGCGCY 1 cut(s) 17
BfuAI ACCTGC 1 cut(s) 580
BfuI GTATCC 1 cut(s) 470
BglII AGATCT 1 cut(s) 315
BisI GCNGC 3 cut(s) 46, 693, 1013
BlsI GCNGC 3 cut(s) 47, 694, 1014
Bme1390I CCNGG 5 cut(s) 42, 85, 111, 117, 633
Bme18I GGWCC 6 cut(s) 80, 87, 113, 519, 569, 751
BmgT120I GGNCC 7 cut(s) 80, 87, 113, 519, 569, 667, 751
BmiI GGNNCC 4 cut(s) 82, 114, 752, 1021
BmrFI CCNGG 5 cut(s) 42, 85, 111, 117, 633
BmsI GCATC 2 cut(s) 202, 946
BpiI GAAGAC 2 cut(s) 129, 212
BpmI CTGGAG 1 cut(s) 654
Bpu10I CCTNAGC 1 cut(s) 985
Bpu14I TTCGAA 1 cut(s) 295
BpuMI CCSGG 1 cut(s) 111
BsaHI GRCGYC 1 cut(s) 442
BsaI GGTCTC 1 cut(s) 589
BsaJI CCNNGG 3 cut(s) 83, 372, 670
BsaXI ACNNNNNCTCC 4 cut(s) 202, 232, 533, 563
Bsc4I CCNNNNNNNGG 2 cut(s) 116, 936
Bse1I ACTGG 2 cut(s) 611, 693
BseBI CCWGG 4 cut(s) 42, 85, 117, 633
BseDI CCNNGG 3 cut(s) 83, 372, 670
BseGI GGATG 1 cut(s) 1035
BseLI CCNNNNNNNGG 2 cut(s) 116, 936
BseMII CTCAG 3 cut(s) 602, 951, 999
BseNI ACTGG 2 cut(s) 611, 693
BseRI GAGGAG 1 cut(s) 393
BseSI GKGCMC 4 cut(s) 405, 843, 894, 1075
BseXI GCAGC 2 cut(s) 679, 1024
BseYI CCCAGC 1 cut(s) 664
BshFI GGCC 1 cut(s) 669
BsiHKAI GWGCWC 1 cut(s) 894
BsiSI CCGG 1 cut(s) 110
BslFI GGGAC 1 cut(s) 222
BslI CCNNNNNNNGG 2 cut(s) 116, 936
BsmAI GTCTC 3 cut(s) 42, 304, 589
BsmFI GGGAC 1 cut(s) 222
BsmI GAATGC 1 cut(s) 271
BsnI GGCC 1 cut(s) 669
Bso31I GGTCTC 1 cut(s) 589
Bsp119I TTCGAA 1 cut(s) 295
Bsp1286I GDGCHC 4 cut(s) 405, 843, 894, 1075
Bsp143I GATC 4 cut(s) 315, 628, 640, 1019
Bsp19I CCATGG 1 cut(s) 670
BspACI CCGC 3 cut(s) 45, 614, 937
BspANI GGCC 1 cut(s) 669
BspCNI CTCAG 3 cut(s) 601, 952, 998
BspLI GGNNCC 4 cut(s) 82, 114, 752, 1021
BspMI ACCTGC 1 cut(s) 580
BspPI GGATC 3 cut(s) 623, 1014, 1027
BspT104I TTCGAA 1 cut(s) 295
BspTNI GGTCTC 1 cut(s) 589
BsrI ACTGG 2 cut(s) 611, 693
BssECI CCNNGG 3 cut(s) 83, 372, 670
BssMI GATC 4 cut(s) 315, 628, 640, 1019
BssNI GRCGYC 1 cut(s) 442
BssSI CACGAG 1 cut(s) 887
BssT1I CCWWGG 1 cut(s) 670
Bst2BI CACGAG 1 cut(s) 887
Bst2UI CCWGG 4 cut(s) 42, 85, 117, 633
Bst4CI ACNGT 2 cut(s) 128, 516
BstACI GRCGYC 1 cut(s) 442
BstBI TTCGAA 1 cut(s) 295
BstC8I GCNNGC 1 cut(s) 599
BstDEI CTNAG 4 cut(s) 302, 588, 960, 985
BstDSI CCRYGG 1 cut(s) 670
BstF5I GGATG 1 cut(s) 1035
BstH2I RGCGCY 1 cut(s) 17
BstHHI GCGC 1 cut(s) 16
BstKTI GATC 4 cut(s) 318, 631, 643, 1022
BstMAI GTCTC 3 cut(s) 42, 304, 589
BstMBI GATC 4 cut(s) 315, 628, 640, 1019
BstNI CCWGG 4 cut(s) 42, 85, 117, 633
BstNSI RCATGY 2 cut(s) 466, 601
BstSCI CCNGG 5 cut(s) 40, 83, 109, 115, 631
BstSLI GKGCMC 4 cut(s) 405, 843, 894, 1075
BstV1I GCAGC 2 cut(s) 679, 1024
BstV2I GAAGAC 2 cut(s) 129, 212
BstX2I RGATCY 2 cut(s) 315, 1019
BstYI RGATCY 2 cut(s) 315, 1019
BsuI GTATCC 1 cut(s) 470
BsuRI GGCC 1 cut(s) 669
BtgI CCRYGG 1 cut(s) 670
BtsCI GGATG 1 cut(s) 1035
BtsIMutI CAGTG 1 cut(s) 521
BveI ACCTGC 1 cut(s) 580
Cac8I GCNNGC 1 cut(s) 599
CfoI GCGC 1 cut(s) 16
Cfr13I GGNCC 7 cut(s) 80, 87, 113, 519, 569, 667, 751
CseI GACGC 2 cut(s) 450, 684
Csp6I GTAC 2 cut(s) 707, 980
CviAII CATG 7 cut(s) 424, 463, 598, 671, 772, 809, 1003
CviQI GTAC 2 cut(s) 707, 980
DdeI CTNAG 4 cut(s) 302, 588, 960, 985
DpnI GATC 4 cut(s) 317, 630, 642, 1021
DpnII GATC 4 cut(s) 315, 628, 640, 1019
Eco130I CCWWGG 1 cut(s) 670
Eco31I GGTCTC 1 cut(s) 589
Eco47I GGWCC 6 cut(s) 80, 87, 113, 519, 569, 751
Eco57I CTGAAG 4 cut(s) 81, 93, 206, 981
EcoO109I RGGNCCY 2 cut(s) 80, 751
EcoRII CCWGG 4 cut(s) 40, 83, 115, 631
EcoT14I CCWWGG 1 cut(s) 670
ErhI CCWWGG 1 cut(s) 670
FaeI CATG 7 cut(s) 427, 466, 601, 674, 775, 812, 1006
FaqI GGGAC 1 cut(s) 222
FatI CATG 7 cut(s) 423, 462, 597, 670, 771, 808, 1002
FauI CCCGC 1 cut(s) 930
FauNDI CATATG 1 cut(s) 918
Fnu4HI GCNGC 3 cut(s) 46, 693, 1013
FokI GGATG 1 cut(s) 1042
Fsp4HI GCNGC 3 cut(s) 46, 693, 1013
FspBI CTAG 4 cut(s) 276, 791, 819, 845
GlaI GCGC 1 cut(s) 15
GluI GCNGC 3 cut(s) 46, 693, 1013
GsaI CCCAGC 1 cut(s) 668
GsuI CTGGAG 1 cut(s) 654
HaeII RGCGCY 1 cut(s) 17
HaeIII GGCC 1 cut(s) 669
HapII CCGG 1 cut(s) 110
HgaI GACGC 2 cut(s) 450, 684
HhaI GCGC 1 cut(s) 16
Hin1I GRCGYC 1 cut(s) 442
Hin1II CATG 7 cut(s) 427, 466, 601, 674, 775, 812, 1006
Hin6I GCGC 1 cut(s) 14
HinP1I GCGC 1 cut(s) 14
HincII GTYRAC 1 cut(s) 686
HindII GTYRAC 1 cut(s) 686
HinfI GANTC 5 cut(s) 19, 68, 147, 383, 396
HpaII CCGG 1 cut(s) 110
HphI GGTGA 2 cut(s) 628, 839
Hpy166II GTNNAC 3 cut(s) 519, 686, 892
Hpy188I TCNGA 5 cut(s) 61, 73, 205, 225, 591
Hpy188III TCNNGA 8 cut(s) 276, 499, 644, 713, 722, 757, 967, 1136
Hpy8I GTNNAC 3 cut(s) 519, 686, 892
HpyAV CCTTC 6 cut(s) 71, 719, 860, 893, 1005, 1112
HpyCH4III ACNGT 2 cut(s) 128, 516
HpyCH4V TGCA 9 cut(s) 193, 245, 466, 742, 875, 892, 916, 1012, 1079
HpyF3I CTNAG 4 cut(s) 302, 588, 960, 985
Hsp92I GRCGYC 1 cut(s) 442
Hsp92II CATG 7 cut(s) 427, 466, 601, 674, 775, 812, 1006
HspAI GCGC 1 cut(s) 14
Kzo9I GATC 4 cut(s) 315, 628, 640, 1019
Lsp1109I GCAGC 2 cut(s) 679, 1024
LweI GCATC 2 cut(s) 202, 946
MaeI CTAG 4 cut(s) 276, 791, 819, 845
MaeIII GTNAC 1 cut(s) 367
MalI GATC 4 cut(s) 317, 630, 642, 1021
MboI GATC 4 cut(s) 315, 628, 640, 1019
MboII GAAGA 6 cut(s) 48, 74, 77, 86, 134, 212
MflI RGATCY 2 cut(s) 315, 1019
MhlI GDGCHC 4 cut(s) 405, 843, 894, 1075
MluCI AATT 1 cut(s) 260
MlyI GAGTC 1 cut(s) 156
MmeI TCCRAC 1 cut(s) 519
MseI TTAA 1 cut(s) 942
MslI CAYNNNNRTG 1 cut(s) 1007
MspI CCGG 1 cut(s) 110
MspR9I CCNGG 5 cut(s) 42, 85, 111, 117, 633
Mva1269I GAATGC 1 cut(s) 271
MvaI CCWGG 4 cut(s) 42, 85, 117, 633
NciI CCSGG 1 cut(s) 111
NcoI CCATGG 1 cut(s) 670
NdeI CATATG 1 cut(s) 918
NdeII GATC 4 cut(s) 315, 628, 640, 1019
NlaIII CATG 7 cut(s) 427, 466, 601, 674, 775, 812, 1006
NlaIV GGNNCC 4 cut(s) 82, 114, 752, 1021
NmuCI GTSAC 1 cut(s) 367
NspI RCATGY 2 cut(s) 466, 601
NspV TTCGAA 1 cut(s) 295
PaeI GCATGC 1 cut(s) 601
PctI GAATGC 1 cut(s) 271
PfeI GAWTC 4 cut(s) 19, 68, 383, 396
PfoI TCCNGGA 2 cut(s) 115, 631
PkrI GCNGC 3 cut(s) 47, 694, 1014
PleI GAGTC 1 cut(s) 155
PpsI GAGTC 1 cut(s) 155
PpuMI RGGWCCY 2 cut(s) 80, 751
Psp5II RGGWCCY 2 cut(s) 80, 751
Psp6I CCWGG 4 cut(s) 40, 83, 115, 631
PspFI CCCAGC 1 cut(s) 664
PspGI CCWGG 4 cut(s) 40, 83, 115, 631
PspN4I GGNNCC 4 cut(s) 82, 114, 752, 1021
PspPI GGNCC 7 cut(s) 80, 87, 113, 519, 569, 667, 751
PspPPI RGGWCCY 2 cut(s) 80, 751
PsuI RGATCY 2 cut(s) 315, 1019
RsaI GTAC 2 cut(s) 708, 981
RsaNI GTAC 2 cut(s) 707, 980
RseI CAYNNNNRTG 1 cut(s) 1007
SaqAI TTAA 1 cut(s) 942
SatI GCNGC 3 cut(s) 46, 693, 1013
Sau3AI GATC 4 cut(s) 315, 628, 640, 1019
Sau96I GGNCC 7 cut(s) 80, 87, 113, 519, 569, 667, 751
SchI GAGTC 1 cut(s) 156
ScrFI CCNGG 5 cut(s) 42, 85, 111, 117, 633
SduI GDGCHC 4 cut(s) 405, 843, 894, 1075
SfaNI GCATC 2 cut(s) 202, 946
SfuI TTCGAA 1 cut(s) 295
SinI GGWCC 6 cut(s) 80, 87, 113, 519, 569, 751
SmiMI CAYNNNNRTG 1 cut(s) 1007
SpeI ACTAGT 1 cut(s) 818
SphI GCATGC 1 cut(s) 601
Sse9I AATT 1 cut(s) 260
SsiI CCGC 3 cut(s) 45, 614, 937
SspMI CTAG 4 cut(s) 276, 791, 819, 845
StyD4I CCNGG 5 cut(s) 40, 83, 109, 115, 631
StyI CCWWGG 1 cut(s) 670
TaaI ACNGT 2 cut(s) 128, 516
TaqI TCGA 2 cut(s) 295, 498
TaqII GACCGA 1 cut(s) 386
TasI AATT 1 cut(s) 260
TauI GCSGC 1 cut(s) 48
TfiI GAWTC 4 cut(s) 19, 68, 383, 396
Tru1I TTAA 1 cut(s) 942
Tru9I TTAA 1 cut(s) 942
TscAI CASTG 1 cut(s) 521
TseFI GTSAC 1 cut(s) 367
TseI GCWGC 2 cut(s) 692, 1012
Tsp45I GTSAC 1 cut(s) 367
TspDTI ATGAA 3 cut(s) 412, 1019, 1131
TspGWI ACGGA 1 cut(s) 489
TspRI CASTG 1 cut(s) 521
VneI GTGCAC 1 cut(s) 890
VpaK11BI GGWCC 6 cut(s) 80, 87, 113, 519, 569, 751
XbaI TCTAGA 1 cut(s) 275
XceI RCATGY 2 cut(s) 466, 601
XspI CTAG 4 cut(s) 276, 791, 819, 845
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.