Basic Information

Type: gene

Biological Identity

Species

rosa_roxburghii

Chromosome

GWHEROQ00000002

Orthogroup ID

OG0001373

Physical Location & Seq

Genomic Coordinates Reverse (-)

1705215 .. 1707107

Gene Structure 1893 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rroxscaffold_2G00078380.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 687 bp

ATGTTGGATGGTTCTTGGGCTATATCTGTTGTTGGGATGTTACATTTACGTTTGGATTTTTGTTTTGTGGGGGTGATTTCAGGCCAAGCTCACAGCAGCAAAGAAAAGTTTGGGAGAGAAATTCGTGTTTTTGAAACGGCAGCATCTTCTTCTTCGCAAAATGTAGAGTCCAATACCGAGGAGCCAGATGACCTTTATGAGTTCACTGCTGAGGATTATTATCGGATAATGAATACCAAGAAGGAAGTTTCATATCTGCAGGCTGTGATCAGGGTTCGCTTTCCTGATAATACAACATTAGAGGCCACTTTTCATCCATCAGAAACAATTCAGAGCTTGGTTGATCTCCTTATGAAAATGGTTGCTCGACCAGAATTATCGTTCCACATATATACTACTCCTCCTAAGAAGCTGATAAAAGACATGACACAGGACTTTTACTCTGCTGGCTTTGCTCCTGGTGCAATTGTATATTTTTCATATGATATTCCAAAAGGTGATGAAACTGCAGATGTCAAGTCAGGTCCTTTCCTTCATGACGAGATCATGTCTTTGAAAGGTCTGGAACTTGTGAAAGAGCATGCAGAGCCTGTTCAGACTGCACCAGAACCTATACACGAGGCACCACCCCTGTTGTCCAAGAGAAGAAGCCTGCCGAGAAAAAATCTGTTAAGCCAAAGTGGCTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0005488 GO:0005515 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0005654 GO:0005886 GO:0008150 GO:0009893 GO:0009987 GO:0010604 GO:0016020 GO:0016043 GO:0019222 GO:0019899 GO:0022411 GO:0031323 GO:0031325 GO:0031399 GO:0031401 GO:0031974 GO:0031981 GO:0032268 GO:0032270 GO:0032501 GO:0032502 GO:0032984 GO:0035265 GO:0040007 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043233 GO:0043933 GO:0044422 GO:0044424 GO:0044428 GO:0044446 GO:0044464 GO:0048518 GO:0048522 GO:0048589 GO:0050789 GO:0050794 GO:0051117 GO:0051171 GO:0051173 GO:0051246 GO:0051247 GO:0060255 GO:0065007 GO:0070013 GO:0071840 GO:0071944 GO:0080090

KEGG Pathways

Metabolic & Signaling

ko05202 map05202

Pfam Domains

Protein Families

UBX

Protein Analysis

228

Amino Acids

25.63

Weight (kDa)

5.4

Isoelectric Point (pI)

45.84

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
UBX	PF00789	87 - 143	6.1e-06	UBX domain

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

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Publication-ready

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Orthologous Genes (Group: OG0001373)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT3G27310
fragaria_vesca	FvH4_2g09210 FvH4_3g43800 FvH4_6g52650 FvH4_6g52820 FvH4_6g52860
malus_domestica	MD09G1017300.v1.1 MD10G1138200.v1.1 MD17G1018100.v1.1
prunus_persica	Prupe.3G299600_v2.0.a1 Prupe.3G299600_v2.0.a1 Prupe.8G176800_v2.0.a1
pyrus_communis	pycom05g12990 pycom111g01420
rosa_chinensis	RchiOBHm_Chr2g0174181 RchiOBHm_Chr2g0174441 RchiOBHm_Chr6g0265061
rosa_laevigata	RLG00000014212 RLG00000022254 RLG00000022266 RLG00000022272
rosa_multiflora	Rmu_sc0000954.1_g000001 Rmu_sc0001533.1_g000005 Rmu_sc0003649.1_g000013 Rmu_sc0003649.1_g000018 Rmu_sc0003649.1_g000021 Rmu_ssc0000198.1_g000003 Rmu_ssc0000359.1_g000079
rosa_roxburghii	Rroxscaffold_175G00432130 Rroxscaffold_2G00078080 Rroxscaffold_2G00078110 Rroxscaffold_2G00078140 Rroxscaffold_2G00078190 Rroxscaffold_2G00078380
rosa_rugosa	Rorug02G0575700 Rorug02G0577500 Rorug06G0013300
rosa_samantha	Rh2AG655100 Rh2AG658300 Rh2AG658500 Rh2BG666300 Rh2BG669300 Rh2BG669500 Rh2CG630500 Rh2CG632400 Rh2CG632500 Rh2DG680900 Rh2DG683100 Rh2DG683200
rosa_wichuraiana	Rw2G053770 Rw2G053910 Rw2G053930 Rw6G011780

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccB1I	GGYRCC	1 cut(s)	622
AcsI	RAATTY	1 cut(s)	120
AgsI	TTSAA	2 cut(s)	134, 556
AjnI	CCWGG	1 cut(s)	457
AluBI	AGCT	3 cut(s)	89, 336, 412
AluI	AGCT	3 cut(s)	89, 336, 412
AlwNI	CAGNNNCTG	1 cut(s)	590
AoxI	GGCC	2 cut(s)	82, 303
ApeKI	GCWGC	2 cut(s)	96, 140
ApoI	RAATTY	1 cut(s)	120
Asp700I	GAANNNNTTC	1 cut(s)	327
AspS9I	GGNCC	1 cut(s)	524
AsuHPI	GGTGA	2 cut(s)	85, 509
AvaII	GGWCC	1 cut(s)	524
BanI	GGYRCC	1 cut(s)	622
BauI	CACGAG	1 cut(s)	617
BbvCI	CCTCAGC	1 cut(s)	210
BbvI	GCAGC	2 cut(s)	108, 152
BccI	CCATC	2 cut(s)	2, 325
BceAI	ACGGC	1 cut(s)	153
BciT130I	CCWGG	1 cut(s)	459
BclI	TGATCA	1 cut(s)	267
BfmI	CTRYAG	2 cut(s)	257, 507
BglI	GCCNNNNNGGC	1 cut(s)	681
BisI	GCNGC	2 cut(s)	97, 141
BlsI	GCNGC	2 cut(s)	98, 142
Bme1390I	CCNGG	1 cut(s)	459
Bme18I	GGWCC	1 cut(s)	524
BmgT120I	GGNCC	1 cut(s)	524
BmiI	GGNNCC	2 cut(s)	183, 624
BmrFI	CCNGG	1 cut(s)	459
BmsI	GCATC	1 cut(s)	152
Bpu10I	CCTNAGC	1 cut(s)	210
BsaBI	GATNNNNATC	1 cut(s)	219
BsaJI	CCNNGG	1 cut(s)	177
BsaXI	ACNNNNNCTCC	2 cut(s)	385, 415
Bse8I	GATNNNNATC	1 cut(s)	219
BseBI	CCWGG	1 cut(s)	459
BseDI	CCNNGG	1 cut(s)	177
BseGI	GGATG	3 cut(s)	13, 42, 313
BseJI	GATNNNNATC	1 cut(s)	219
BseMII	CTCAG	1 cut(s)	201
BseRI	GAGGAG	2 cut(s)	194, 390
BseXI	GCAGC	2 cut(s)	108, 152
BsgI	GTGCAG	1 cut(s)	585
BshFI	GGCC	2 cut(s)	84, 305
BshNI	GGYRCC	1 cut(s)	622
BsnI	GGCC	2 cut(s)	84, 305
Bsp143I	GATC	3 cut(s)	267, 343, 543
BspANI	GGCC	2 cut(s)	84, 305
BspCNI	CTCAG	1 cut(s)	202
BspHI	TCATGA	1 cut(s)	535
BspLI	GGNNCC	2 cut(s)	183, 624
BspMAI	CTGCAG	2 cut(s)	261, 511
BspT107I	GGYRCC	1 cut(s)	622
BssECI	CCNNGG	1 cut(s)	177
BssMI	GATC	3 cut(s)	267, 343, 543
BssSI	CACGAG	1 cut(s)	617
Bst2BI	CACGAG	1 cut(s)	617
Bst2UI	CCWGG	1 cut(s)	459
BstC8I	GCNNGC	4 cut(s)	261, 448, 582, 653
BstDEI	CTNAG	2 cut(s)	210, 405
BstF5I	GGATG	3 cut(s)	13, 42, 313
BstKTI	GATC	3 cut(s)	270, 346, 546
BstMBI	GATC	3 cut(s)	267, 343, 543
BstMWI	GCNNNNNNNGC	4 cut(s)	452, 461, 586, 681
BstNI	CCWGG	1 cut(s)	459
BstNSI	RCATGY	1 cut(s)	584
BstSCI	CCNGG	1 cut(s)	457
BstSFI	CTRYAG	2 cut(s)	257, 507
BstV1I	GCAGC	2 cut(s)	108, 152
BsuRI	GGCC	2 cut(s)	84, 305
BtsCI	GGATG	3 cut(s)	13, 42, 313
BtsI	GCAGTG	1 cut(s)	204
BtsIMutI	CAGTG	1 cut(s)	204
Cac8I	GCNNGC	4 cut(s)	261, 448, 582, 653
CaiI	CAGNNNCTG	1 cut(s)	590
CciI	TCATGA	1 cut(s)	535
Cfr13I	GGNCC	1 cut(s)	524
CspCI	CAANNNNNGTGG	2 cut(s)	615, 650
CviAII	CATG	4 cut(s)	424, 536, 547, 581
DdeI	CTNAG	2 cut(s)	210, 405
DpnI	GATC	3 cut(s)	269, 345, 545
DpnII	GATC	3 cut(s)	267, 343, 543
Eco47I	GGWCC	1 cut(s)	524
EcoO109I	RGGNCCY	1 cut(s)	524
EcoRII	CCWGG	1 cut(s)	457
FaeI	CATG	4 cut(s)	427, 539, 550, 584
FatI	CATG	4 cut(s)	423, 535, 546, 580
FauNDI	CATATG	1 cut(s)	481
FbaI	TGATCA	1 cut(s)	267
Fnu4HI	GCNGC	2 cut(s)	97, 141
FokI	GGATG	3 cut(s)	20, 49, 300
Fsp4HI	GCNGC	2 cut(s)	97, 141
GluI	GCNGC	2 cut(s)	97, 141
HaeIII	GGCC	2 cut(s)	84, 305
Hin1II	CATG	4 cut(s)	427, 539, 550, 584
HinfI	GANTC	1 cut(s)	167
HphI	GGTGA	2 cut(s)	85, 509
Hpy166II	GTNNAC	1 cut(s)	204
Hpy188I	TCNGA	4 cut(s)	225, 322, 333, 597
Hpy188III	TCNNGA	3 cut(s)	284, 536, 563
Hpy8I	GTNNAC	1 cut(s)	204
HpyAV	CCTTC	2 cut(s)	235, 542
HpyCH4IV	ACGT	1 cut(s)	49
HpyCH4V	TGCA	5 cut(s)	259, 464, 509, 584, 602
HpyF10VI	GCNNNNNNNGC	4 cut(s)	452, 461, 586, 681
HpyF3I	CTNAG	2 cut(s)	210, 405
HpySE526I	ACGT	1 cut(s)	49
Hsp92II	CATG	4 cut(s)	427, 539, 550, 584
Ksp22I	TGATCA	1 cut(s)	267
Kzo9I	GATC	3 cut(s)	267, 343, 543
LmnI	GCTCC	2 cut(s)	181, 460
Lsp1109I	GCAGC	2 cut(s)	108, 152
LweI	GCATC	1 cut(s)	152
MaeII	ACGT	1 cut(s)	49
MaeIII	GTNAC	1 cut(s)	39
MalI	GATC	3 cut(s)	269, 345, 545
MboI	GATC	3 cut(s)	267, 343, 543
MboII	GAAGA	4 cut(s)	138, 141, 144, 657
MfeI	CAATTG	1 cut(s)	465
MluCI	AATT	4 cut(s)	120, 327, 374, 465
MlyI	GAGTC	1 cut(s)	176
MnlI	CCTC	5 cut(s)	172, 205, 295, 411, 613
MroXI	GAANNNNTTC	1 cut(s)	327
MseI	TTAA	1 cut(s)	671
MspR9I	CCNGG	1 cut(s)	459
MunI	CAATTG	1 cut(s)	465
MvaI	CCWGG	1 cut(s)	459
MwoI	GCNNNNNNNGC	4 cut(s)	452, 461, 586, 681
NdeI	CATATG	1 cut(s)	481
NdeII	GATC	3 cut(s)	267, 343, 543
NlaIII	CATG	4 cut(s)	427, 539, 550, 584
NlaIV	GGNNCC	2 cut(s)	183, 624
NmeAIII	GCCGAG	1 cut(s)	681
NspI	RCATGY	1 cut(s)	584
PaeI	GCATGC	1 cut(s)	584
PagI	TCATGA	1 cut(s)	535
PdmI	GAANNNNTTC	1 cut(s)	327
PkrI	GCNGC	2 cut(s)	98, 142
PleI	GAGTC	1 cut(s)	175
PpsI	GAGTC	1 cut(s)	175
PpuMI	RGGWCCY	1 cut(s)	524
Psp5II	RGGWCCY	1 cut(s)	524
Psp6I	CCWGG	1 cut(s)	457
PspGI	CCWGG	1 cut(s)	457
PspN4I	GGNNCC	2 cut(s)	183, 624
PspPI	GGNCC	1 cut(s)	524
PspPPI	RGGWCCY	1 cut(s)	524
PstI	CTGCAG	2 cut(s)	261, 511
PstNI	CAGNNNCTG	1 cut(s)	590
SaqAI	TTAA	1 cut(s)	671
SatI	GCNGC	2 cut(s)	97, 141
Sau3AI	GATC	3 cut(s)	267, 343, 543
Sau96I	GGNCC	1 cut(s)	524
SchI	GAGTC	1 cut(s)	176
ScrFI	CCNGG	1 cut(s)	459
SetI	ASST	9 cut(s)	52, 91, 195, 338, 414, 499, 526, 562, 613
SfaNI	GCATC	1 cut(s)	152
SfcI	CTRYAG	2 cut(s)	257, 507
SinI	GGWCC	1 cut(s)	524
SphI	GCATGC	1 cut(s)	584
Sse9I	AATT	4 cut(s)	120, 327, 374, 465
StyD4I	CCNGG	1 cut(s)	457
TaiI	ACGT	1 cut(s)	52
TaqI	TCGA	1 cut(s)	367
TasI	AATT	4 cut(s)	120, 327, 374, 465
Tru1I	TTAA	1 cut(s)	671
Tru9I	TTAA	1 cut(s)	671
TscAI	CASTG	1 cut(s)	211
TseI	GCWGC	2 cut(s)	96, 140
TspDTI	ATGAA	7 cut(s)	240, 245, 302, 368, 468, 516, 524
TspRI	CASTG	1 cut(s)	211
VpaK11BI	GGWCC	1 cut(s)	524
XapI	RAATTY	1 cut(s)	120
XceI	RCATGY	1 cut(s)	584
XmnI	GAANNNNTTC	1 cut(s)	327

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.