Basic Information

Type: gene

Biological Identity

Species

pyrus_communis

Chromosome

Chr5

Orthogroup ID

OG0001373

Physical Location & Seq

Genomic Coordinates Reverse (-)

16529543 .. 16529960

Gene Structure 418 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

pycom05g12990.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 375 bp

ATGGGCTATTGGGTCAATAAGTGGCCCACTACAATTCGGCCACCAATTCAACAGCGCCCGCGACAGCAAGACAAGCTCCTCAAAACGCAGAAGATTAGAGAGGCAGAGGACGCAAAACGCAGGTCGACGATCACAAGGGCGGTGATTAGGGTCAGGTTTCCGGATAACCGCACAGTGGAGGCGACCTTTCACCCGTCGGATAAAATCCAGAGCTTGGTGGATTACCTGAGGAAAGTCATTGCTCGGCCGGAGTTACCGTTTTACTTATTTACTGCTCCGGCGAAGCAGGTGATGAGCGACATGTCGCGGGATTTTTACTCGGCTGGATTTGTTCCCGGCGCAGTAGTGCATCTTACGTATGGTGTCCCGAACTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0005488 GO:0005515 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0005654 GO:0005886 GO:0008150 GO:0009893 GO:0009987 GO:0010604 GO:0016020 GO:0016043 GO:0019222 GO:0019899 GO:0022411 GO:0031323 GO:0031325 GO:0031399 GO:0031401 GO:0031974 GO:0031981 GO:0032268 GO:0032270 GO:0032501 GO:0032502 GO:0032984 GO:0035265 GO:0040007 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043233 GO:0043933 GO:0044422 GO:0044424 GO:0044428 GO:0044446 GO:0044464 GO:0048518 GO:0048522 GO:0048589 GO:0050789 GO:0050794 GO:0051117 GO:0051171 GO:0051173 GO:0051246 GO:0051247 GO:0060255 GO:0065007 GO:0070013 GO:0071840 GO:0071944 GO:0080090

KEGG Pathways

Metabolic & Signaling

ko05202 map05202

Pfam Domains

Protein Families

UBX

Protein Analysis

125

Amino Acids

14.42

Weight (kDa)

10.31

Isoelectric Point (pI)

59.47

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0001373)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT3G27310
fragaria_vesca	FvH4_2g09210 FvH4_3g43800 FvH4_6g52650 FvH4_6g52820 FvH4_6g52860
malus_domestica	MD09G1017300.v1.1 MD10G1138200.v1.1 MD17G1018100.v1.1
prunus_persica	Prupe.3G299600_v2.0.a1 Prupe.3G299600_v2.0.a1 Prupe.8G176800_v2.0.a1
pyrus_communis	pycom05g12990 pycom111g01420
rosa_chinensis	RchiOBHm_Chr2g0174181 RchiOBHm_Chr2g0174441 RchiOBHm_Chr6g0265061
rosa_laevigata	RLG00000014212 RLG00000022254 RLG00000022266 RLG00000022272
rosa_multiflora	Rmu_sc0000954.1_g000001 Rmu_sc0001533.1_g000005 Rmu_sc0003649.1_g000013 Rmu_sc0003649.1_g000018 Rmu_sc0003649.1_g000021 Rmu_ssc0000198.1_g000003 Rmu_ssc0000359.1_g000079
rosa_roxburghii	Rroxscaffold_175G00432130 Rroxscaffold_2G00078080 Rroxscaffold_2G00078110 Rroxscaffold_2G00078140 Rroxscaffold_2G00078190 Rroxscaffold_2G00078380
rosa_rugosa	Rorug02G0575700 Rorug02G0577500 Rorug06G0013300
rosa_samantha	Rh2AG655100 Rh2AG658300 Rh2AG658500 Rh2BG666300 Rh2BG669300 Rh2BG669500 Rh2CG630500 Rh2CG632400 Rh2CG632500 Rh2DG680900 Rh2DG683100 Rh2DG683200
rosa_wichuraiana	Rw2G053770 Rw2G053910 Rw2G053930 Rw6G011780

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AarI	CACCTGC	1 cut(s)	277
Acc36I	ACCTGC	2 cut(s)	111, 277
AccB7I	CCANNNNNTGG	1 cut(s)	214
AccI	GTMKAC	1 cut(s)	125
AccII	CGCG	2 cut(s)	61, 307
AccIII	TCCGGA	1 cut(s)	160
AciI	CCGC	4 cut(s)	59, 140, 169, 307
AcoI	YGGCCR	2 cut(s)	38, 245
AfiI	CCNNNNNNNGG	2 cut(s)	175, 214
AflIII	ACRYGT	1 cut(s)	300
AgsI	TTSAA	1 cut(s)	50
AluBI	AGCT	2 cut(s)	76, 213
AluI	AGCT	2 cut(s)	76, 213
Aor13HI	TCCGGA	1 cut(s)	160
AoxI	GGCC	3 cut(s)	23, 38, 245
ArsI	GACNNNNNNTTYG	2 cut(s)	107, 139
AspLEI	GCGC	2 cut(s)	57, 341
AspS9I	GGNCC	1 cut(s)	24
AsuC2I	CCSGG	1 cut(s)	336
AsuHPI	GGTGA	3 cut(s)	154, 182, 301
AxyI	CCTNAGG	1 cut(s)	227
BcnI	CCSGG	1 cut(s)	336
BfoI	RGCGCY	1 cut(s)	58
BfuAI	ACCTGC	2 cut(s)	111, 277
Bme1390I	CCNGG	1 cut(s)	336
BmgT120I	GGNCC	1 cut(s)	24
BmrFI	CCNGG	1 cut(s)	336
BmsI	GCATC	1 cut(s)	358
BpuMI	CCSGG	1 cut(s)	336
BsaAI	YACGTR	1 cut(s)	357
BsaWI	WCCGGW	1 cut(s)	160
BsaXI	ACNNNNNCTCC	2 cut(s)	242, 272
Bsc4I	CCNNNNNNNGG	2 cut(s)	175, 214
Bse21I	CCTNAGG	1 cut(s)	227
Bse3DI	GCAATG	1 cut(s)	237
BseAI	TCCGGA	1 cut(s)	160
BseLI	CCNNNNNNNGG	2 cut(s)	175, 214
BseMI	GCAATG	1 cut(s)	237
BseMII	CTCAG	1 cut(s)	218
BseRI	GAGGAG	1 cut(s)	68
BseX3I	CGGCCG	1 cut(s)	245
Bsh1236I	CGCG	2 cut(s)	61, 307
Bsh1285I	CGRYCG	1 cut(s)	248
BshFI	GGCC	3 cut(s)	25, 40, 247
BsiEI	CGRYCG	1 cut(s)	248
BsiSI	CCGG	4 cut(s)	161, 248, 278, 336
BslFI	GGGAC	1 cut(s)	350
BslI	CCNNNNNNNGG	2 cut(s)	175, 214
BsmFI	GGGAC	1 cut(s)	350
BsnI	GGCC	3 cut(s)	25, 40, 247
Bsp13I	TCCGGA	1 cut(s)	160
Bsp143I	GATC	1 cut(s)	129
BspACI	CCGC	4 cut(s)	59, 140, 169, 307
BspANI	GGCC	3 cut(s)	25, 40, 247
BspCNI	CTCAG	1 cut(s)	219
BspEI	TCCGGA	1 cut(s)	160
BspFNI	CGCG	2 cut(s)	61, 307
BspMI	ACCTGC	2 cut(s)	111, 277
BsrDI	GCAATG	1 cut(s)	237
BssMI	GATC	1 cut(s)	129
Bst4CI	ACNGT	2 cut(s)	175, 258
BstBAI	YACGTR	1 cut(s)	357
BstC8I	GCNNGC	1 cut(s)	59
BstDEI	CTNAG	1 cut(s)	227
BstFNI	CGCG	2 cut(s)	61, 307
BstH2I	RGCGCY	1 cut(s)	58
BstHHI	GCGC	2 cut(s)	57, 341
BstKTI	GATC	1 cut(s)	132
BstMBI	GATC	1 cut(s)	129
BstMCI	CGRYCG	1 cut(s)	248
BstMWI	GCNNNNNNNGC	2 cut(s)	73, 110
BstNSI	RCATGY	1 cut(s)	304
BstSCI	CCNGG	1 cut(s)	334
BstSNI	TACGTA	1 cut(s)	357
BstUI	CGCG	2 cut(s)	61, 307
BstZI	CGGCCG	1 cut(s)	245
Bsu36I	CCTNAGG	1 cut(s)	227
BsuRI	GGCC	3 cut(s)	25, 40, 247
BtsIMutI	CAGTG	1 cut(s)	180
BveI	ACCTGC	2 cut(s)	111, 277
Cac8I	GCNNGC	1 cut(s)	59
CfoI	GCGC	2 cut(s)	57, 341
Cfr13I	GGNCC	1 cut(s)	24
CseI	GACGC	1 cut(s)	119
CviAII	CATG	1 cut(s)	301
CviJI	RGCY	7 cut(s)	6, 25, 40, 76, 213, 247, 323
CviKI_1	RGCY	7 cut(s)	6, 25, 40, 76, 213, 247, 323
DdeI	CTNAG	1 cut(s)	227
DpnI	GATC	1 cut(s)	131
DpnII	GATC	1 cut(s)	129
EaeI	YGGCCR	2 cut(s)	38, 245
EagI	CGGCCG	1 cut(s)	245
EclXI	CGGCCG	1 cut(s)	245
Eco105I	TACGTA	1 cut(s)	357
Eco52I	CGGCCG	1 cut(s)	245
Eco81I	CCTNAGG	1 cut(s)	227
FaeI	CATG	1 cut(s)	304
FaiI	YATR	2 cut(s)	302, 360
FaqI	GGGAC	1 cut(s)	350
FatI	CATG	1 cut(s)	300
FauI	CCCGC	2 cut(s)	66, 300
FblI	GTMKAC	1 cut(s)	125
GlaI	GCGC	2 cut(s)	56, 340
HaeII	RGCGCY	1 cut(s)	58
HaeIII	GGCC	3 cut(s)	25, 40, 247
HapII	CCGG	4 cut(s)	161, 248, 278, 336
HgaI	GACGC	1 cut(s)	119
HhaI	GCGC	2 cut(s)	57, 341
Hin1II	CATG	1 cut(s)	304
Hin6I	GCGC	2 cut(s)	55, 339
HinP1I	GCGC	2 cut(s)	55, 339
HincII	GTYRAC	1 cut(s)	126
HindII	GTYRAC	1 cut(s)	126
HpaII	CCGG	4 cut(s)	161, 248, 278, 336
HphI	GGTGA	3 cut(s)	154, 182, 301
Hpy166II	GTNNAC	1 cut(s)	126
Hpy188I	TCNGA	1 cut(s)	199
Hpy188III	TCNNGA	3 cut(s)	161, 208, 367
Hpy8I	GTNNAC	1 cut(s)	126
Hpy99I	CGWCG	2 cut(s)	130, 199
HpyCH4III	ACNGT	2 cut(s)	175, 258
HpyCH4IV	ACGT	1 cut(s)	356
HpyCH4V	TGCA	1 cut(s)	349
HpyF10VI	GCNNNNNNNGC	2 cut(s)	73, 110
HpyF3I	CTNAG	1 cut(s)	227
HpySE526I	ACGT	1 cut(s)	356
Hsp92II	CATG	1 cut(s)	304
HspAI	GCGC	2 cut(s)	55, 339
Kpn2I	TCCGGA	1 cut(s)	160
Kzo9I	GATC	1 cut(s)	129
LmnI	GCTCC	2 cut(s)	81, 280
LweI	GCATC	1 cut(s)	358
MaeII	ACGT	1 cut(s)	356
MaeIII	GTNAC	1 cut(s)	252
MalI	GATC	1 cut(s)	131
MboI	GATC	1 cut(s)	129
MboII	GAAGA	1 cut(s)	103
MluCI	AATT	2 cut(s)	33, 45
MmeI	TCCRAC	1 cut(s)	177
MnlI	CCTC	5 cut(s)	89, 94, 100, 172, 222
MroI	TCCGGA	1 cut(s)	160
MspI	CCGG	4 cut(s)	161, 248, 278, 336
MspR9I	CCNGG	1 cut(s)	336
MvnI	CGCG	2 cut(s)	61, 307
MwoI	GCNNNNNNNGC	2 cut(s)	73, 110
NciI	CCSGG	1 cut(s)	336
NdeII	GATC	1 cut(s)	129
NlaIII	CATG	1 cut(s)	304
NmeAIII	GCCGAG	2 cut(s)	223, 299
NspI	RCATGY	1 cut(s)	304
PaqCI	CACCTGC	1 cut(s)	277
PciI	ACATGT	1 cut(s)	300
PflMI	CCANNNNNTGG	1 cut(s)	214
Ppu21I	YACGTR	1 cut(s)	357
PscI	ACATGT	1 cut(s)	300
PspPI	GGNCC	1 cut(s)	24
SalI	GTCGAC	1 cut(s)	124
Sau3AI	GATC	1 cut(s)	129
Sau96I	GGNCC	1 cut(s)	24
ScrFI	CCNGG	1 cut(s)	336
SetI	ASST	8 cut(s)	78, 125, 158, 188, 215, 228, 291, 359
SfaNI	GCATC	1 cut(s)	358
SnaBI	TACGTA	1 cut(s)	357
Sse9I	AATT	2 cut(s)	33, 45
SsiI	CCGC	4 cut(s)	59, 140, 169, 307
StyD4I	CCNGG	1 cut(s)	334
TaaI	ACNGT	2 cut(s)	175, 258
TaiI	ACGT	1 cut(s)	359
TaqI	TCGA	1 cut(s)	125
TasI	AATT	2 cut(s)	33, 45
TscAI	CASTG	1 cut(s)	180
TspRI	CASTG	1 cut(s)	180
Van91I	CCANNNNNTGG	1 cut(s)	214
XceI	RCATGY	1 cut(s)	304
XmiI	GTMKAC	1 cut(s)	125

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.