RLG00000022272

No description available

Basic Information

Type: gene
Biological Identity
rosa_laevigata
Chr4
Physical Location & Seq
Reverse (-)
82130190 .. 82131526
1337 bp
Loading structure...
UTR
Exon/CDS
Intron
RLM00000022272

Sequence Viewer

Length: 339 bp
ATGGAAGCACGTTCAACTGGTACAGAGCCGAGACTCTCTTTCCTGCATATTTGGGTGCTGCTGAAGGAACTTGAGTGGTACAGTTGGCACAAGCTGGTTACTTTGCCCTCCAGCATTTACACTAGTCCAGATGAAGTCTTTATACCCTTGGTGTTCTATTATGGCAAGGAAGACGGAGCGATCAATCTTCTCCTTCACCTGAATATGATGGAAGTTCTCCTTCACCAAGAAGACTGCTTCACCATCCGACGATGCCCTTGTACTCATCGGCCAGTCCCGAGACAAAGTGTGCTTCGAGAATCTTTCAAGCAAAAAGATTTGCATCTGGGACTTGAATAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
No domains found.

Protein Analysis

113

Amino Acids

13.24

Weight (kDa)

6.29

Isoelectric Point (pI)

56.3

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

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Publication-ready

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AcoI YGGCCR 1 cut(s) 269
AcuI CTGAAG 1 cut(s) 83
AfaI GTAC 3 cut(s) 22, 80, 262
AgsI TTSAA 3 cut(s) 15, 307, 335
AhlI ACTAGT 1 cut(s) 122
AluBI AGCT 1 cut(s) 94
AluI AGCT 1 cut(s) 94
Alw26I GTCTC 2 cut(s) 25, 274
Ama87I CYCGRG 1 cut(s) 277
AoxI GGCC 1 cut(s) 269
ApeKI GCWGC 1 cut(s) 58
AsuHPI GGTGA 3 cut(s) 188, 215, 232
AvaI CYCGRG 1 cut(s) 277
BarI GAAGNNNNNNTAC 2 cut(s) 126, 158
BbsI GAAGAC 2 cut(s) 177, 237
BbvI GCAGC 1 cut(s) 45
BccI CCATC 2 cut(s) 202, 251
BcoDI GTCTC 2 cut(s) 25, 274
BcuI ACTAGT 1 cut(s) 122
BfaI CTAG 1 cut(s) 123
BisI GCNGC 1 cut(s) 59
BlsI GCNGC 1 cut(s) 60
BmeT110I CYCGRG 1 cut(s) 277
BmsI GCATC 2 cut(s) 242, 331
BpiI GAAGAC 2 cut(s) 177, 237
BpmI CTGGAG 1 cut(s) 94
BpuEI CTTGAG 1 cut(s) 92
BsaBI GATNNNNATC 1 cut(s) 321
BsaJI CCNNGG 1 cut(s) 147
Bse1I ACTGG 2 cut(s) 22, 272
Bse8I GATNNNNATC 1 cut(s) 321
BseDI CCNNGG 1 cut(s) 147
BseGI GGATG 1 cut(s) 243
BseJI GATNNNNATC 1 cut(s) 321
BseNI ACTGG 2 cut(s) 22, 272
BseXI GCAGC 1 cut(s) 45
BshFI GGCC 1 cut(s) 271
BsiHKCI CYCGRG 1 cut(s) 277
BslFI GGGAC 1 cut(s) 260
BsmAI GTCTC 2 cut(s) 25, 274
BsmFI GGGAC 1 cut(s) 260
BsnI GGCC 1 cut(s) 271
BsoBI CYCGRG 1 cut(s) 277
Bsp143I GATC 1 cut(s) 180
BspANI GGCC 1 cut(s) 271
BsrI ACTGG 2 cut(s) 22, 272
BssECI CCNNGG 1 cut(s) 147
BssMI GATC 1 cut(s) 180
BssT1I CCWWGG 1 cut(s) 147
Bst4CI ACNGT 1 cut(s) 83
BstF5I GGATG 1 cut(s) 243
BstKTI GATC 1 cut(s) 183
BstMAI GTCTC 2 cut(s) 25, 274
BstMBI GATC 1 cut(s) 180
BstV1I GCAGC 1 cut(s) 45
BstV2I GAAGAC 2 cut(s) 177, 237
BsuRI GGCC 1 cut(s) 271
BtsCI GGATG 1 cut(s) 243
Csp6I GTAC 3 cut(s) 21, 79, 261
CviJI RGCY 3 cut(s) 28, 94, 271
CviKI_1 RGCY 3 cut(s) 28, 94, 271
CviQI GTAC 3 cut(s) 21, 79, 261
DpnI GATC 1 cut(s) 182
DpnII GATC 1 cut(s) 180
EaeI YGGCCR 1 cut(s) 269
Eco130I CCWWGG 1 cut(s) 147
Eco57I CTGAAG 1 cut(s) 83
Eco88I CYCGRG 1 cut(s) 277
EcoT14I CCWWGG 1 cut(s) 147
ErhI CCWWGG 1 cut(s) 147
FaiI YATR 4 cut(s) 48, 143, 162, 206
FalI AAGNNNNNCTT 2 cut(s) 204, 236
FaqI GGGAC 1 cut(s) 260
Fnu4HI GCNGC 1 cut(s) 59
FokI GGATG 1 cut(s) 230
Fsp4HI GCNGC 1 cut(s) 59
FspBI CTAG 1 cut(s) 123
GluI GCNGC 1 cut(s) 59
GsuI CTGGAG 1 cut(s) 94
HaeIII GGCC 1 cut(s) 271
HinfI GANTC 2 cut(s) 33, 299
HphI GGTGA 3 cut(s) 188, 215, 232
Hpy188I TCNGA 1 cut(s) 248
Hpy188III TCNNGA 3 cut(s) 128, 277, 296
Hpy99I CGWCG 1 cut(s) 252
HpyAV CCTTC 3 cut(s) 58, 203, 230
HpyCH4III ACNGT 1 cut(s) 83
HpyCH4IV ACGT 1 cut(s) 10
HpyCH4V TGCA 2 cut(s) 46, 322
HpySE526I ACGT 1 cut(s) 10
Kzo9I GATC 1 cut(s) 180
LmnI GCTCC 1 cut(s) 176
LpnPI CCDG 8 cut(s) 3, 56, 80, 124, 141, 212, 285, 311
Lsp1109I GCAGC 1 cut(s) 45
LweI GCATC 2 cut(s) 242, 331
MaeI CTAG 1 cut(s) 123
MaeII ACGT 1 cut(s) 10
MaeIII GTNAC 1 cut(s) 97
MalI GATC 1 cut(s) 182
MboI GATC 1 cut(s) 180
MboII GAAGA 3 cut(s) 179, 182, 242
MlyI GAGTC 1 cut(s) 27
MmeI TCCRAC 1 cut(s) 271
MnlI CCTC 1 cut(s) 118
NdeII GATC 1 cut(s) 180
NmeAIII GCCGAG 1 cut(s) 54
PfeI GAWTC 1 cut(s) 299
PkrI GCNGC 1 cut(s) 60
PleI GAGTC 1 cut(s) 27
PpsI GAGTC 1 cut(s) 27
RsaI GTAC 3 cut(s) 22, 80, 262
RsaNI GTAC 3 cut(s) 21, 79, 261
SatI GCNGC 1 cut(s) 59
Sau3AI GATC 1 cut(s) 180
SchI GAGTC 1 cut(s) 27
SetI ASST 3 cut(s) 13, 96, 201
SfaNI GCATC 2 cut(s) 242, 331
SmlI CTYRAG 1 cut(s) 71
SmoI CTYRAG 1 cut(s) 71
SpeI ACTAGT 1 cut(s) 122
SspMI CTAG 1 cut(s) 123
StyI CCWWGG 1 cut(s) 147
TaaI ACNGT 1 cut(s) 83
TaiI ACGT 1 cut(s) 13
TaqI TCGA 1 cut(s) 295
TatI WGTACW 1 cut(s) 260
TfiI GAWTC 1 cut(s) 299
TseI GCWGC 1 cut(s) 58
TspDTI ATGAA 1 cut(s) 147
TspGWI ACGGA 1 cut(s) 189
XspI CTAG 1 cut(s) 123
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.