Basic Information

Type: gene

Biological Identity

Species

rosa_samantha

Chromosome

Chr2D

Orthogroup ID

OG0001373

Physical Location & Seq

Genomic Coordinates Forward (+)

90024561 .. 90027432

Gene Structure 2872 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rh2DG680900.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 522 bp

ATGAATACCAAGAAGGAAGATAAGTTCCTGAAAACACGAAAGATTAGAGAGGCAGAACAGGCAGCTCGCAGGTCAAGGATAACAAAGGCTGTGATCAGGGTTCGCTTTCCTGATAATACAACATTAGAGGCCACTTTTCATCCATCAGAAACAATTCAGAGCTTGGTTGATCTCCTTATGAAAGTGGTTGCTCGACCAGAATTATCATTCCACATATATACTACTCCTCCTAAGAAGCTGATAAAAGACATGACACAGGACTTTTACTCTGCTGGCTTTGCTCCTGGTGCGATTGTATATTTTTCATATGATATTCCAAAAGGTGATGATGCTGCAGATGTCAAGTCAGGTCCTTTCCTCCACGACGAGATCATGTCTTTGAAAGGTCTGGAACTTGTGAAAGAGCATGCAGAGCCTGTTCAGACTGCACCAGAACCTATACACGAGGCACCACCCCCTGTTGTCCAAGAGAAGAAGCCTGCCGAGAAAAAATCTGTTAAGCCAAAGTGGCTGAAAATGTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0005488 GO:0005515 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0005654 GO:0005886 GO:0008150 GO:0009893 GO:0009987 GO:0010604 GO:0016020 GO:0016043 GO:0019222 GO:0019899 GO:0022411 GO:0031323 GO:0031325 GO:0031399 GO:0031401 GO:0031974 GO:0031981 GO:0032268 GO:0032270 GO:0032501 GO:0032502 GO:0032984 GO:0035265 GO:0040007 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043233 GO:0043933 GO:0044422 GO:0044424 GO:0044428 GO:0044446 GO:0044464 GO:0048518 GO:0048522 GO:0048589 GO:0050789 GO:0050794 GO:0051117 GO:0051171 GO:0051173 GO:0051246 GO:0051247 GO:0060255 GO:0065007 GO:0070013 GO:0071840 GO:0071944 GO:0080090

KEGG Pathways

Metabolic & Signaling

ko05202 map05202

Pfam Domains

Protein Families

UBX

Protein Analysis

173

Amino Acids

19.62

Weight (kDa)

9.28

Isoelectric Point (pI)

44.42

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
UBX	PF00789	28 - 85	3e-06	UBX domain

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

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Orthologous Genes (Group: OG0001373)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT3G27310
fragaria_vesca	FvH4_2g09210 FvH4_3g43800 FvH4_6g52650 FvH4_6g52820 FvH4_6g52860
malus_domestica	MD09G1017300.v1.1 MD10G1138200.v1.1 MD17G1018100.v1.1
prunus_persica	Prupe.3G299600_v2.0.a1 Prupe.3G299600_v2.0.a1 Prupe.8G176800_v2.0.a1
pyrus_communis	pycom05g12990 pycom111g01420
rosa_chinensis	RchiOBHm_Chr2g0174181 RchiOBHm_Chr2g0174441 RchiOBHm_Chr6g0265061
rosa_laevigata	RLG00000014212 RLG00000022254 RLG00000022266 RLG00000022272
rosa_multiflora	Rmu_sc0000954.1_g000001 Rmu_sc0001533.1_g000005 Rmu_sc0003649.1_g000013 Rmu_sc0003649.1_g000018 Rmu_sc0003649.1_g000021 Rmu_ssc0000198.1_g000003 Rmu_ssc0000359.1_g000079
rosa_roxburghii	Rroxscaffold_175G00432130 Rroxscaffold_2G00078080 Rroxscaffold_2G00078110 Rroxscaffold_2G00078140 Rroxscaffold_2G00078190 Rroxscaffold_2G00078380
rosa_rugosa	Rorug02G0575700 Rorug02G0577500 Rorug06G0013300
rosa_samantha	Rh2AG655100 Rh2AG658300 Rh2AG658500 Rh2BG666300 Rh2BG669300 Rh2BG669500 Rh2CG630500 Rh2CG632400 Rh2CG632500 Rh2DG680900 Rh2DG683100 Rh2DG683200
rosa_wichuraiana	Rw2G053770 Rw2G053910 Rw2G053930 Rw6G011780

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
Acc36I	ACCTGC	1 cut(s)	60
AccB1I	GGYRCC	1 cut(s)	448
AgsI	TTSAA	1 cut(s)	382
AjnI	CCWGG	1 cut(s)	283
AloI	GAACNNNNNNTCC	2 cut(s)	8, 40
AluBI	AGCT	3 cut(s)	65, 162, 238
AluI	AGCT	3 cut(s)	65, 162, 238
AlwNI	CAGNNNCTG	1 cut(s)	416
AoxI	GGCC	1 cut(s)	129
ApeKI	GCWGC	2 cut(s)	62, 332
Asp700I	GAANNNNTTC	1 cut(s)	153
AspS9I	GGNCC	1 cut(s)	350
AsuHPI	GGTGA	1 cut(s)	335
AvaII	GGWCC	1 cut(s)	350
BanI	GGYRCC	1 cut(s)	448
BauI	CACGAG	1 cut(s)	443
BbvI	GCAGC	2 cut(s)	74, 319
BccI	CCATC	1 cut(s)	151
BciT130I	CCWGG	1 cut(s)	285
BclI	TGATCA	1 cut(s)	93
BfmI	CTRYAG	1 cut(s)	333
BfuAI	ACCTGC	1 cut(s)	60
BglI	GCCNNNNNGGC	1 cut(s)	508
BisI	GCNGC	2 cut(s)	63, 333
BlsI	GCNGC	2 cut(s)	64, 334
Bme1390I	CCNGG	1 cut(s)	285
Bme18I	GGWCC	1 cut(s)	350
BmgT120I	GGNCC	1 cut(s)	350
BmiI	GGNNCC	1 cut(s)	450
BmrFI	CCNGG	1 cut(s)	285
BmsI	GCATC	1 cut(s)	319
BsaXI	ACNNNNNCTCC	2 cut(s)	211, 241
BseBI	CCWGG	1 cut(s)	285
BseGI	GGATG	1 cut(s)	139
BseRI	GAGGAG	1 cut(s)	216
BseXI	GCAGC	2 cut(s)	74, 319
BsgI	GTGCAG	1 cut(s)	411
BshFI	GGCC	1 cut(s)	131
BshNI	GGYRCC	1 cut(s)	448
BsnI	GGCC	1 cut(s)	131
Bsp143I	GATC	3 cut(s)	93, 169, 369
BspANI	GGCC	1 cut(s)	131
BspLI	GGNNCC	1 cut(s)	450
BspMAI	CTGCAG	1 cut(s)	337
BspMI	ACCTGC	1 cut(s)	60
BspT107I	GGYRCC	1 cut(s)	448
BssMI	GATC	3 cut(s)	93, 169, 369
BssSI	CACGAG	1 cut(s)	443
Bst2BI	CACGAG	1 cut(s)	443
Bst2UI	CCWGG	1 cut(s)	285
BstC8I	GCNNGC	4 cut(s)	67, 274, 408, 480
BstDEI	CTNAG	1 cut(s)	231
BstF5I	GGATG	1 cut(s)	139
BstKTI	GATC	3 cut(s)	96, 172, 372
BstMBI	GATC	3 cut(s)	93, 169, 369
BstMWI	GCNNNNNNNGC	5 cut(s)	59, 278, 287, 412, 508
BstNI	CCWGG	1 cut(s)	285
BstNSI	RCATGY	1 cut(s)	410
BstSCI	CCNGG	1 cut(s)	283
BstSFI	CTRYAG	1 cut(s)	333
BstV1I	GCAGC	2 cut(s)	74, 319
BsuRI	GGCC	1 cut(s)	131
BtsCI	GGATG	1 cut(s)	139
BveI	ACCTGC	1 cut(s)	60
Cac8I	GCNNGC	4 cut(s)	67, 274, 408, 480
CaiI	CAGNNNCTG	1 cut(s)	416
Cfr13I	GGNCC	1 cut(s)	350
CviAII	CATG	3 cut(s)	250, 373, 407
DdeI	CTNAG	1 cut(s)	231
DpnI	GATC	3 cut(s)	95, 171, 371
DpnII	GATC	3 cut(s)	93, 169, 369
Eco47I	GGWCC	1 cut(s)	350
EcoO109I	RGGNCCY	1 cut(s)	350
EcoRII	CCWGG	1 cut(s)	283
FaeI	CATG	3 cut(s)	253, 376, 410
FatI	CATG	3 cut(s)	249, 372, 406
FauNDI	CATATG	1 cut(s)	307
FbaI	TGATCA	1 cut(s)	93
Fnu4HI	GCNGC	2 cut(s)	63, 333
FokI	GGATG	1 cut(s)	126
Fsp4HI	GCNGC	2 cut(s)	63, 333
GluI	GCNGC	2 cut(s)	63, 333
HaeIII	GGCC	1 cut(s)	131
Hin1II	CATG	3 cut(s)	253, 376, 410
HphI	GGTGA	1 cut(s)	335
Hpy188I	TCNGA	3 cut(s)	148, 159, 423
Hpy188III	TCNNGA	3 cut(s)	28, 110, 389
Hpy99I	CGWCG	1 cut(s)	368
HpyAV	CCTTC	1 cut(s)	7
HpyCH4V	TGCA	3 cut(s)	335, 410, 428
HpyF10VI	GCNNNNNNNGC	5 cut(s)	59, 278, 287, 412, 508
HpyF3I	CTNAG	1 cut(s)	231
Hsp92II	CATG	3 cut(s)	253, 376, 410
Ksp22I	TGATCA	1 cut(s)	93
Kzo9I	GATC	3 cut(s)	93, 169, 369
LmnI	GCTCC	1 cut(s)	286
Lsp1109I	GCAGC	2 cut(s)	74, 319
LweI	GCATC	1 cut(s)	319
MalI	GATC	3 cut(s)	95, 171, 371
MboI	GATC	3 cut(s)	93, 169, 369
MboII	GAAGA	2 cut(s)	29, 484
MluCI	AATT	2 cut(s)	153, 200
MnlI	CCTC	5 cut(s)	43, 121, 237, 368, 439
MroXI	GAANNNNTTC	1 cut(s)	153
MseI	TTAA	1 cut(s)	498
MspR9I	CCNGG	1 cut(s)	285
MvaI	CCWGG	1 cut(s)	285
MwoI	GCNNNNNNNGC	5 cut(s)	59, 278, 287, 412, 508
NdeI	CATATG	1 cut(s)	307
NdeII	GATC	3 cut(s)	93, 169, 369
NlaIII	CATG	3 cut(s)	253, 376, 410
NlaIV	GGNNCC	1 cut(s)	450
NmeAIII	GCCGAG	1 cut(s)	508
NspI	RCATGY	1 cut(s)	410
PaeI	GCATGC	1 cut(s)	410
PdmI	GAANNNNTTC	1 cut(s)	153
PkrI	GCNGC	2 cut(s)	64, 334
PpuMI	RGGWCCY	1 cut(s)	350
Psp5II	RGGWCCY	1 cut(s)	350
Psp6I	CCWGG	1 cut(s)	283
PspGI	CCWGG	1 cut(s)	283
PspN4I	GGNNCC	1 cut(s)	450
PspPI	GGNCC	1 cut(s)	350
PspPPI	RGGWCCY	1 cut(s)	350
PstI	CTGCAG	1 cut(s)	337
PstNI	CAGNNNCTG	1 cut(s)	416
SaqAI	TTAA	1 cut(s)	498
SatI	GCNGC	2 cut(s)	63, 333
Sau3AI	GATC	3 cut(s)	93, 169, 369
Sau96I	GGNCC	1 cut(s)	350
ScrFI	CCNGG	1 cut(s)	285
SetI	ASST	8 cut(s)	67, 74, 164, 240, 325, 352, 388, 439
SfaNI	GCATC	1 cut(s)	319
SfcI	CTRYAG	1 cut(s)	333
SinI	GGWCC	1 cut(s)	350
SphI	GCATGC	1 cut(s)	410
Sse9I	AATT	2 cut(s)	153, 200
StyD4I	CCNGG	1 cut(s)	283
TaqI	TCGA	1 cut(s)	193
TasI	AATT	2 cut(s)	153, 200
Tru1I	TTAA	1 cut(s)	498
Tru9I	TTAA	1 cut(s)	498
TseI	GCWGC	2 cut(s)	62, 332
TspDTI	ATGAA	4 cut(s)	17, 128, 194, 294
VpaK11BI	GGWCC	1 cut(s)	350
XceI	RCATGY	1 cut(s)	410
XmnI	GAANNNNTTC	1 cut(s)	153

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.