Rmu_sc0001533.1_g000005

No description available

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_multiflora
Rmu_sc0001533.1
OG0001373
Physical Location & Seq
Reverse (-)
15497 .. 15970
474 bp
Loading structure...
UTR
Exon/CDS
Intron
Rmu_sc0001533.1_g000005.1.cds

Sequence Viewer

Length: 390 bp
atgaaaagacaaggtgatttctgctctccctcttcatcgtcgtcgaagaagaacaagcttcccacctcccagaaaaaacccgttgccgtttgtcccaggattcttcatgtcaaagatgatgggcagttggagaccaagaagattgcttcaccatccggcgatgcccttgtactcatcggccagtcccgagacaaagtgtgcttcgagaatctttcaagcaaaaagatttgcatctgggacttgaataaagaacagatggaaaatgaagttgaatttgaatggagaataccagccgctcatggatttgggcacaccagaactggacaactgaagatagtgaggttcttaatcccaattgttgacgctggagatctggaaagacaacgatga
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
No domains found.

Protein Analysis

129

Amino Acids

14.52

Weight (kDa)

9.3

Isoelectric Point (pI)

38.34

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccBSI CCGCTC 1 cut(s) 296
AciI CCGC 1 cut(s) 294
AcoI YGGCCR 1 cut(s) 178
AcsI RAATTY 1 cut(s) 272
AcuI CTGAAG 1 cut(s) 350
AfaI GTAC 1 cut(s) 171
AgsI TTSAA 4 cut(s) 216, 244, 272, 278
AjnI CCWGG 1 cut(s) 95
AluBI AGCT 1 cut(s) 58
AluI AGCT 1 cut(s) 58
Alw26I GTCTC 2 cut(s) 125, 183
Ama87I CYCGRG 1 cut(s) 186
AoxI GGCC 1 cut(s) 178
ApoI RAATTY 1 cut(s) 272
AsuHPI GGTGA 2 cut(s) 26, 141
AvaI CYCGRG 1 cut(s) 186
BaeGI GKGCMC 1 cut(s) 312
BccI CCATC 3 cut(s) 113, 160, 250
BceAI ACGGC 1 cut(s) 71
BciT130I CCWGG 1 cut(s) 97
BcoDI GTCTC 2 cut(s) 125, 183
BglII AGATCT 1 cut(s) 370
BisI GCNGC 1 cut(s) 294
BlsI GCNGC 1 cut(s) 295
Bme1390I CCNGG 1 cut(s) 97
BmeT110I CYCGRG 1 cut(s) 186
BmrFI CCNGG 1 cut(s) 97
BmsI GCATC 2 cut(s) 151, 240
BpmI CTGGAG 1 cut(s) 387
BsaBI GATNNNNATC 1 cut(s) 230
BsaI GGTCTC 1 cut(s) 125
BsaJI CCNNGG 1 cut(s) 95
Bse1I ACTGG 2 cut(s) 181, 325
Bse8I GATNNNNATC 1 cut(s) 230
BseBI CCWGG 1 cut(s) 97
BseDI CCNNGG 1 cut(s) 95
BseGI GGATG 1 cut(s) 152
BseJI GATNNNNATC 1 cut(s) 230
BseNI ACTGG 2 cut(s) 181, 325
BseSI GKGCMC 1 cut(s) 312
BshFI GGCC 1 cut(s) 180
BsiHKCI CYCGRG 1 cut(s) 186
BsiSI CCGG 1 cut(s) 156
BslFI GGGAC 3 cut(s) 78, 169, 251
BsmAI GTCTC 2 cut(s) 125, 183
BsmFI GGGAC 3 cut(s) 78, 169, 251
BsnI GGCC 1 cut(s) 180
Bso31I GGTCTC 1 cut(s) 125
BsoBI CYCGRG 1 cut(s) 186
Bsp1286I GDGCHC 1 cut(s) 312
Bsp143I GATC 1 cut(s) 370
BspACI CCGC 1 cut(s) 294
BspANI GGCC 1 cut(s) 180
BspTNI GGTCTC 1 cut(s) 125
BsrBI CCGCTC 1 cut(s) 296
BsrI ACTGG 2 cut(s) 181, 325
BssECI CCNNGG 1 cut(s) 95
BssMI GATC 1 cut(s) 370
Bst2UI CCWGG 1 cut(s) 97
Bst6I CTCTTC 1 cut(s) 37
BstF5I GGATG 1 cut(s) 152
BstKTI GATC 1 cut(s) 373
BstMAI GTCTC 2 cut(s) 125, 183
BstMBI GATC 1 cut(s) 370
BstNI CCWGG 1 cut(s) 97
BstSCI CCNGG 1 cut(s) 95
BstSLI GKGCMC 1 cut(s) 312
BstX2I RGATCY 1 cut(s) 370
BstYI RGATCY 1 cut(s) 370
BsuRI GGCC 1 cut(s) 180
BtgZI GCGATG 1 cut(s) 174
BtsCI GGATG 1 cut(s) 152
CseI GACGC 1 cut(s) 371
Csp6I GTAC 1 cut(s) 170
CviAII CATG 2 cut(s) 107, 299
CviJI RGCY 3 cut(s) 58, 180, 293
CviKI_1 RGCY 3 cut(s) 58, 180, 293
CviQI GTAC 1 cut(s) 170
DpnI GATC 1 cut(s) 372
DpnII GATC 1 cut(s) 370
EaeI YGGCCR 1 cut(s) 178
Eam1104I CTCTTC 1 cut(s) 37
EarI CTCTTC 1 cut(s) 37
Eco31I GGTCTC 1 cut(s) 125
Eco57I CTGAAG 1 cut(s) 350
Eco88I CYCGRG 1 cut(s) 186
EcoRII CCWGG 1 cut(s) 95
FaeI CATG 2 cut(s) 110, 302
FaiI YATR 2 cut(s) 108, 300
FaqI GGGAC 3 cut(s) 78, 169, 251
FatI CATG 2 cut(s) 106, 298
Fnu4HI GCNGC 1 cut(s) 294
FokI GGATG 1 cut(s) 139
Fsp4HI GCNGC 1 cut(s) 294
GluI GCNGC 1 cut(s) 294
GsuI CTGGAG 1 cut(s) 387
HaeIII GGCC 1 cut(s) 180
HapII CCGG 1 cut(s) 156
HgaI GACGC 1 cut(s) 371
Hin1II CATG 2 cut(s) 110, 302
HincII GTYRAC 1 cut(s) 361
HindII GTYRAC 1 cut(s) 361
HindIII AAGCTT 1 cut(s) 56
HinfI GANTC 2 cut(s) 100, 208
HpaII CCGG 1 cut(s) 156
HphI GGTGA 2 cut(s) 26, 141
Hpy166II GTNNAC 1 cut(s) 361
Hpy188III TCNNGA 3 cut(s) 186, 205, 374
Hpy8I GTNNAC 1 cut(s) 361
Hpy99I CGWCG 2 cut(s) 43, 46
HpyCH4V TGCA 1 cut(s) 231
Hsp92II CATG 2 cut(s) 110, 302
Kzo9I GATC 1 cut(s) 370
LweI GCATC 2 cut(s) 151, 240
MalI GATC 1 cut(s) 372
MbiI CCGCTC 1 cut(s) 296
MboI GATC 1 cut(s) 370
MboII GAAGA 6 cut(s) 24, 58, 61, 95, 151, 343
MfeI CAATTG 1 cut(s) 354
MflI RGATCY 1 cut(s) 370
MhlI GDGCHC 1 cut(s) 312
MluCI AATT 2 cut(s) 272, 354
MmeI TCCRAC 1 cut(s) 108
MnlI CCTC 3 cut(s) 40, 76, 333
MseI TTAA 1 cut(s) 347
MspI CCGG 1 cut(s) 156
MspR9I CCNGG 1 cut(s) 97
MunI CAATTG 1 cut(s) 354
MvaI CCWGG 1 cut(s) 97
NdeII GATC 1 cut(s) 370
NlaIII CATG 2 cut(s) 110, 302
PfeI GAWTC 2 cut(s) 100, 208
PkrI GCNGC 1 cut(s) 295
Psp6I CCWGG 1 cut(s) 95
PspGI CCWGG 1 cut(s) 95
PsuI RGATCY 1 cut(s) 370
RsaI GTAC 1 cut(s) 171
RsaNI GTAC 1 cut(s) 170
SaqAI TTAA 1 cut(s) 347
SatI GCNGC 1 cut(s) 294
Sau3AI GATC 1 cut(s) 370
ScrFI CCNGG 1 cut(s) 97
SduI GDGCHC 1 cut(s) 312
SetI ASST 4 cut(s) 16, 60, 68, 344
SfaNI GCATC 2 cut(s) 151, 240
Sse9I AATT 2 cut(s) 272, 354
SsiI CCGC 1 cut(s) 294
StyD4I CCNGG 1 cut(s) 95
TaqI TCGA 2 cut(s) 44, 204
TasI AATT 2 cut(s) 272, 354
TatI WGTACW 1 cut(s) 169
TauI GCSGC 1 cut(s) 296
TfiI GAWTC 2 cut(s) 100, 208
Tru1I TTAA 1 cut(s) 347
Tru9I TTAA 1 cut(s) 347
TspDTI ATGAA 4 cut(s) 17, 24, 95, 279
XapI RAATTY 1 cut(s) 272
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.