Basic Information

Type: gene

Biological Identity

Species

rosa_laevigata

Chromosome

Chr3

Orthogroup ID

OG0001373

Physical Location & Seq

Genomic Coordinates Forward (+)

49424848 .. 49425303

Gene Structure 456 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

RLM00000014212

Sequence Viewer

CDS Protein Promoter (2k)

Length: 456 bp

ATGATGATTGATGTTTCATCCTCATTATCCTTCAAAAGAAGGAGGCTCCCCGCCAACCACGATAGTATAAAAGCTCACATTTTTGAAGCTTCGGCATTTTCTTCAAACTTTCAGGAGGCTGAGGACAATGAAATTTTTGAATTCACCGCAGAGGATTATTATCGAGTTTTGAATTCCCGGAAAATGAGAGGGGAAGAAAAACAGGTGGGTTGCAGGTCAAGGATCACGAAGGCAGTGATTAGGGTTCGATGTCCTGATCATGATGAGACATTGTTAGAGGCCAGTTTTCATCCATCGGAAAAGATTCAGAGCTTGCTTGATCTTCTCAACAAAGTGGTCGCTCGCCCGTTCCAGATCTATACTACTCCTCCTAAGAAGCTGATAAGAGACATGGCACAGGATTTTTACTCTGCTGGGTTTGTTCCTGGTGCAATTGTTTATTTATCATACCAGTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0005488 GO:0005515 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0005654 GO:0005886 GO:0008150 GO:0009893 GO:0009987 GO:0010604 GO:0016020 GO:0016043 GO:0019222 GO:0019899 GO:0022411 GO:0031323 GO:0031325 GO:0031399 GO:0031401 GO:0031974 GO:0031981 GO:0032268 GO:0032270 GO:0032501 GO:0032502 GO:0032984 GO:0035265 GO:0040007 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043233 GO:0043933 GO:0044422 GO:0044424 GO:0044428 GO:0044446 GO:0044464 GO:0048518 GO:0048522 GO:0048589 GO:0050789 GO:0050794 GO:0051117 GO:0051171 GO:0051173 GO:0051246 GO:0051247 GO:0060255 GO:0065007 GO:0070013 GO:0071840 GO:0071944 GO:0080090

KEGG Pathways

Metabolic & Signaling

ko05202 map05202

Pfam Domains

Protein Families

UBX

Protein Analysis

152

Amino Acids

17.41

Weight (kDa)

7.79

Isoelectric Point (pI)

53.05

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Image

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Publication-ready

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Orthologous Genes (Group: OG0001373)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT3G27310
fragaria_vesca	FvH4_2g09210 FvH4_3g43800 FvH4_6g52650 FvH4_6g52820 FvH4_6g52860
malus_domestica	MD09G1017300.v1.1 MD10G1138200.v1.1 MD17G1018100.v1.1
prunus_persica	Prupe.3G299600_v2.0.a1 Prupe.3G299600_v2.0.a1 Prupe.8G176800_v2.0.a1
pyrus_communis	pycom05g12990 pycom111g01420
rosa_chinensis	RchiOBHm_Chr2g0174181 RchiOBHm_Chr2g0174441 RchiOBHm_Chr6g0265061
rosa_laevigata	RLG00000014212 RLG00000022254 RLG00000022266 RLG00000022272
rosa_multiflora	Rmu_sc0000954.1_g000001 Rmu_sc0001533.1_g000005 Rmu_sc0003649.1_g000013 Rmu_sc0003649.1_g000018 Rmu_sc0003649.1_g000021 Rmu_ssc0000198.1_g000003 Rmu_ssc0000359.1_g000079
rosa_roxburghii	Rroxscaffold_175G00432130 Rroxscaffold_2G00078080 Rroxscaffold_2G00078110 Rroxscaffold_2G00078140 Rroxscaffold_2G00078190 Rroxscaffold_2G00078380
rosa_rugosa	Rorug02G0575700 Rorug02G0577500 Rorug06G0013300
rosa_samantha	Rh2AG655100 Rh2AG658300 Rh2AG658500 Rh2BG666300 Rh2BG669300 Rh2BG669500 Rh2CG630500 Rh2CG632400 Rh2CG632500 Rh2DG680900 Rh2DG683100 Rh2DG683200
rosa_wichuraiana	Rw2G053770 Rw2G053910 Rw2G053930 Rw6G011780

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
Acc36I	ACCTGC	1 cut(s)	204
AciI	CCGC	2 cut(s)	51, 147
AclWI	GGATC	1 cut(s)	230
AcsI	RAATTY	3 cut(s)	132, 140, 172
AgsI	TTSAA	5 cut(s)	34, 86, 105, 140, 172
AjnI	CCWGG	1 cut(s)	424
AluBI	AGCT	4 cut(s)	74, 89, 312, 379
AluI	AGCT	4 cut(s)	74, 89, 312, 379
Alw26I	GTCTC	2 cut(s)	260, 381
AlwI	GGATC	1 cut(s)	230
AoxI	GGCC	1 cut(s)	279
ApoI	RAATTY	3 cut(s)	132, 140, 172
Asp700I	GAANNNNTTC	1 cut(s)	303
AsuC2I	CCSGG	1 cut(s)	178
AsuHPI	GGTGA	1 cut(s)	136
BbvCI	CCTCAGC	1 cut(s)	120
BccI	CCATC	1 cut(s)	301
BciT130I	CCWGG	1 cut(s)	426
BclI	TGATCA	1 cut(s)	256
BcnI	CCSGG	1 cut(s)	178
BcoDI	GTCTC	2 cut(s)	260, 381
BfuAI	ACCTGC	1 cut(s)	204
BglII	AGATCT	1 cut(s)	354
Bme1390I	CCNGG	2 cut(s)	178, 426
BmiI	GGNNCC	1 cut(s)	47
BmrFI	CCNGG	2 cut(s)	178, 426
Bpu10I	CCTNAGC	1 cut(s)	120
BpuMI	CCSGG	1 cut(s)	178
BsaBI	GATNNNNATC	1 cut(s)	159
BsaXI	ACNNNNNCTCC	2 cut(s)	352, 382
Bse1I	ACTGG	2 cut(s)	282, 451
Bse8I	GATNNNNATC	1 cut(s)	159
BseBI	CCWGG	1 cut(s)	426
BseGI	GGATG	2 cut(s)	17, 289
BseJI	GATNNNNATC	1 cut(s)	159
BseMII	CTCAG	1 cut(s)	111
BseNI	ACTGG	2 cut(s)	282, 451
BseRI	GAGGAG	1 cut(s)	357
BseYI	CCCAGC	1 cut(s)	413
BshFI	GGCC	1 cut(s)	281
BsiSI	CCGG	1 cut(s)	178
BsmAI	GTCTC	2 cut(s)	260, 381
BsnI	GGCC	1 cut(s)	281
Bsp143I	GATC	4 cut(s)	222, 256, 319, 354
BspACI	CCGC	2 cut(s)	51, 147
BspANI	GGCC	1 cut(s)	281
BspCNI	CTCAG	1 cut(s)	112
BspHI	TCATGA	1 cut(s)	259
BspLI	GGNNCC	1 cut(s)	47
BspMI	ACCTGC	1 cut(s)	204
BspPI	GGATC	1 cut(s)	230
BsrI	ACTGG	2 cut(s)	282, 451
BssMI	GATC	4 cut(s)	222, 256, 319, 354
Bst2UI	CCWGG	1 cut(s)	426
BstC8I	GCNNGC	2 cut(s)	314, 343
BstDEI	CTNAG	2 cut(s)	120, 372
BstF5I	GGATG	2 cut(s)	17, 289
BstKTI	GATC	4 cut(s)	225, 259, 322, 357
BstMAI	GTCTC	2 cut(s)	260, 381
BstMBI	GATC	4 cut(s)	222, 256, 319, 354
BstNI	CCWGG	1 cut(s)	426
BstSCI	CCNGG	2 cut(s)	176, 424
BstX2I	RGATCY	1 cut(s)	354
BstYI	RGATCY	1 cut(s)	354
BsuRI	GGCC	1 cut(s)	281
BtsCI	GGATG	2 cut(s)	17, 289
BtsI	GCAGTG	1 cut(s)	240
BtsIMutI	CAGTG	1 cut(s)	240
BveI	ACCTGC	1 cut(s)	204
Cac8I	GCNNGC	2 cut(s)	314, 343
CciI	TCATGA	1 cut(s)	259
CviAII	CATG	2 cut(s)	260, 391
CviJI	RGCY	7 cut(s)	46, 74, 89, 119, 281, 312, 379
CviKI_1	RGCY	7 cut(s)	46, 74, 89, 119, 281, 312, 379
DdeI	CTNAG	2 cut(s)	120, 372
DpnI	GATC	4 cut(s)	224, 258, 321, 356
DpnII	GATC	4 cut(s)	222, 256, 319, 354
EcoRI	GAATTC	2 cut(s)	140, 172
EcoRII	CCWGG	1 cut(s)	424
FaeI	CATG	2 cut(s)	263, 394
FaiI	YATR	5 cut(s)	68, 261, 360, 392, 448
FatI	CATG	2 cut(s)	259, 390
FauI	CCCGC	1 cut(s)	58
FbaI	TGATCA	1 cut(s)	256
FokI	GGATG	2 cut(s)	4, 276
GsaI	CCCAGC	1 cut(s)	417
HaeIII	GGCC	1 cut(s)	281
HapII	CCGG	1 cut(s)	178
Hin1II	CATG	2 cut(s)	263, 394
HindIII	AAGCTT	1 cut(s)	87
HinfI	GANTC	1 cut(s)	304
HpaII	CCGG	1 cut(s)	178
HphI	GGTGA	1 cut(s)	136
Hpy188I	TCNGA	2 cut(s)	298, 309
Hpy188III	TCNNGA	5 cut(s)	113, 226, 254, 260, 352
HpyAV	CCTTC	3 cut(s)	33, 40, 223
HpyCH4V	TGCA	2 cut(s)	213, 431
HpyF3I	CTNAG	2 cut(s)	120, 372
Hsp92II	CATG	2 cut(s)	263, 394
Ksp22I	TGATCA	1 cut(s)	256
Kzo9I	GATC	4 cut(s)	222, 256, 319, 354
LmnI	GCTCC	1 cut(s)	51
MalI	GATC	4 cut(s)	224, 258, 321, 356
MboI	GATC	4 cut(s)	222, 256, 319, 354
MboII	GAAGA	3 cut(s)	93, 206, 314
MfeI	CAATTG	1 cut(s)	432
MflI	RGATCY	1 cut(s)	354
MluCI	AATT	4 cut(s)	132, 140, 172, 432
MnlI	CCTC	8 cut(s)	31, 36, 109, 115, 145, 182, 271, 378
MroXI	GAANNNNTTC	1 cut(s)	303
MspI	CCGG	1 cut(s)	178
MspR9I	CCNGG	2 cut(s)	178, 426
MunI	CAATTG	1 cut(s)	432
MvaI	CCWGG	1 cut(s)	426
NciI	CCSGG	1 cut(s)	178
NdeII	GATC	4 cut(s)	222, 256, 319, 354
NlaIII	CATG	2 cut(s)	263, 394
NlaIV	GGNNCC	1 cut(s)	47
PagI	TCATGA	1 cut(s)	259
PdmI	GAANNNNTTC	1 cut(s)	303
PfeI	GAWTC	1 cut(s)	304
PfoI	TCCNGGA	1 cut(s)	176
Psp6I	CCWGG	1 cut(s)	424
PspFI	CCCAGC	1 cut(s)	413
PspGI	CCWGG	1 cut(s)	424
PspN4I	GGNNCC	1 cut(s)	47
PsuI	RGATCY	1 cut(s)	354
Sau3AI	GATC	4 cut(s)	222, 256, 319, 354
ScrFI	CCNGG	2 cut(s)	178, 426
SetI	ASST	6 cut(s)	76, 91, 207, 218, 314, 381
Sse9I	AATT	4 cut(s)	132, 140, 172, 432
SsiI	CCGC	2 cut(s)	51, 147
StyD4I	CCNGG	2 cut(s)	176, 424
TaqI	TCGA	2 cut(s)	163, 247
TasI	AATT	4 cut(s)	132, 140, 172, 432
TfiI	GAWTC	1 cut(s)	304
TscAI	CASTG	1 cut(s)	240
TspDTI	ATGAA	3 cut(s)	6, 144, 278
TspRI	CASTG	1 cut(s)	240
XapI	RAATTY	3 cut(s)	132, 140, 172
XmnI	GAANNNNTTC	1 cut(s)	303

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.