Basic Information

Type: gene

Biological Identity

Species

rosa_wichuraiana

Chromosome

Chr6

Orthogroup ID

OG0001373

Physical Location & Seq

Genomic Coordinates Reverse (-)

20982241 .. 20982693

Gene Structure 453 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rw6G011780.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 453 bp

ATGACTGATGTTTCATCCTCATTATCCTTCAAAAGAAGGAGGCTCCCCGCCAATCTCGATAGTATAAAAGCTCACATTTTTGAAGCTTCGGCATTTTCTTCAAACTATCAGGAGGCTGAGGACGATGAAATTTTTGAATTCACCGCAGAGGATTATTATCGGGTTTTGGACTCCCGGAAGATGAGAGGGGCAGAAGAACAGGTGGCTTGCAGGTCAAGGATCACGAAGGCAGTGATTAGGGTTCGATGTCCTGATAATGATGAGACATTGTTAGAGGCCAGTTTTCATCCATCGGAAAAGATTCAGAGCTTGCTTGATCTTCTCAACAAAGTGGTCGCTCGCCCGTTCCAGATCTATACTACTCCTCCTAAGAAGCTGATAAGAGACACGGCACAGGATTTTTACTCTGCTGGGTTTGTTCCTGGTGCCATTGTTTATTTATCATACCAGTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0005488 GO:0005515 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0005654 GO:0005886 GO:0008150 GO:0009893 GO:0009987 GO:0010604 GO:0016020 GO:0016043 GO:0019222 GO:0019899 GO:0022411 GO:0031323 GO:0031325 GO:0031399 GO:0031401 GO:0031974 GO:0031981 GO:0032268 GO:0032270 GO:0032501 GO:0032502 GO:0032984 GO:0035265 GO:0040007 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043233 GO:0043933 GO:0044422 GO:0044424 GO:0044428 GO:0044446 GO:0044464 GO:0048518 GO:0048522 GO:0048589 GO:0050789 GO:0050794 GO:0051117 GO:0051171 GO:0051173 GO:0051246 GO:0051247 GO:0060255 GO:0065007 GO:0070013 GO:0071840 GO:0071944 GO:0080090

KEGG Pathways

Metabolic & Signaling

ko05202 map05202

Pfam Domains

Protein Families

UBX

Protein Analysis

150

Amino Acids

17.17

Weight (kDa)

5.73

Isoelectric Point (pI)

56.94

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Publication-ready

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Orthologous Genes (Group: OG0001373)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT3G27310
fragaria_vesca	FvH4_2g09210 FvH4_3g43800 FvH4_6g52650 FvH4_6g52820 FvH4_6g52860
malus_domestica	MD09G1017300.v1.1 MD10G1138200.v1.1 MD17G1018100.v1.1
prunus_persica	Prupe.3G299600_v2.0.a1 Prupe.3G299600_v2.0.a1 Prupe.8G176800_v2.0.a1
pyrus_communis	pycom05g12990 pycom111g01420
rosa_chinensis	RchiOBHm_Chr2g0174181 RchiOBHm_Chr2g0174441 RchiOBHm_Chr6g0265061
rosa_laevigata	RLG00000014212 RLG00000022254 RLG00000022266 RLG00000022272
rosa_multiflora	Rmu_sc0000954.1_g000001 Rmu_sc0001533.1_g000005 Rmu_sc0003649.1_g000013 Rmu_sc0003649.1_g000018 Rmu_sc0003649.1_g000021 Rmu_ssc0000198.1_g000003 Rmu_ssc0000359.1_g000079
rosa_roxburghii	Rroxscaffold_175G00432130 Rroxscaffold_2G00078080 Rroxscaffold_2G00078110 Rroxscaffold_2G00078140 Rroxscaffold_2G00078190 Rroxscaffold_2G00078380
rosa_rugosa	Rorug02G0575700 Rorug02G0577500 Rorug06G0013300
rosa_samantha	Rh2AG655100 Rh2AG658300 Rh2AG658500 Rh2BG666300 Rh2BG669300 Rh2BG669500 Rh2CG630500 Rh2CG632400 Rh2CG632500 Rh2DG680900 Rh2DG683100 Rh2DG683200
rosa_wichuraiana	Rw2G053770 Rw2G053910 Rw2G053930 Rw6G011780

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
Acc36I	ACCTGC	1 cut(s)	201
AccB1I	GGYRCC	1 cut(s)	425
AciI	CCGC	2 cut(s)	48, 144
AclWI	GGATC	1 cut(s)	227
AcsI	RAATTY	2 cut(s)	129, 137
AgsI	TTSAA	4 cut(s)	31, 83, 102, 137
AjnI	CCWGG	1 cut(s)	421
AluBI	AGCT	4 cut(s)	71, 86, 309, 376
AluI	AGCT	4 cut(s)	71, 86, 309, 376
Alw26I	GTCTC	2 cut(s)	257, 378
AlwI	GGATC	1 cut(s)	227
AoxI	GGCC	1 cut(s)	276
ApoI	RAATTY	2 cut(s)	129, 137
Asp700I	GAANNNNTTC	1 cut(s)	300
AsuC2I	CCSGG	1 cut(s)	175
AsuHPI	GGTGA	1 cut(s)	133
BanI	GGYRCC	1 cut(s)	425
BbvCI	CCTCAGC	1 cut(s)	117
BccI	CCATC	1 cut(s)	298
BceAI	ACGGC	1 cut(s)	405
BciT130I	CCWGG	1 cut(s)	423
BcnI	CCSGG	1 cut(s)	175
BcoDI	GTCTC	2 cut(s)	257, 378
BfuAI	ACCTGC	1 cut(s)	201
BglII	AGATCT	1 cut(s)	351
Bme1390I	CCNGG	2 cut(s)	175, 423
BmiI	GGNNCC	2 cut(s)	44, 427
BmrFI	CCNGG	2 cut(s)	175, 423
Bpu10I	CCTNAGC	1 cut(s)	117
BpuMI	CCSGG	1 cut(s)	175
BsaBI	GATNNNNATC	1 cut(s)	156
BsaXI	ACNNNNNCTCC	2 cut(s)	349, 379
Bse1I	ACTGG	2 cut(s)	279, 448
Bse8I	GATNNNNATC	1 cut(s)	156
BseBI	CCWGG	1 cut(s)	423
BseGI	GGATG	2 cut(s)	14, 286
BseJI	GATNNNNATC	1 cut(s)	156
BseMII	CTCAG	1 cut(s)	108
BseNI	ACTGG	2 cut(s)	279, 448
BseRI	GAGGAG	1 cut(s)	354
BseYI	CCCAGC	1 cut(s)	410
BshFI	GGCC	1 cut(s)	278
BshNI	GGYRCC	1 cut(s)	425
BsiSI	CCGG	1 cut(s)	175
BsmAI	GTCTC	2 cut(s)	257, 378
BsnI	GGCC	1 cut(s)	278
Bsp143I	GATC	3 cut(s)	219, 316, 351
BspACI	CCGC	2 cut(s)	48, 144
BspANI	GGCC	1 cut(s)	278
BspCNI	CTCAG	1 cut(s)	109
BspLI	GGNNCC	2 cut(s)	44, 427
BspMI	ACCTGC	1 cut(s)	201
BspPI	GGATC	1 cut(s)	227
BspT107I	GGYRCC	1 cut(s)	425
BsrI	ACTGG	2 cut(s)	279, 448
BssMI	GATC	3 cut(s)	219, 316, 351
Bst2UI	CCWGG	1 cut(s)	423
BstC8I	GCNNGC	3 cut(s)	208, 311, 340
BstDEI	CTNAG	2 cut(s)	117, 369
BstF5I	GGATG	2 cut(s)	14, 286
BstKTI	GATC	3 cut(s)	222, 319, 354
BstMAI	GTCTC	2 cut(s)	257, 378
BstMBI	GATC	3 cut(s)	219, 316, 351
BstNI	CCWGG	1 cut(s)	423
BstSCI	CCNGG	2 cut(s)	173, 421
BstX2I	RGATCY	1 cut(s)	351
BstYI	RGATCY	1 cut(s)	351
BsuRI	GGCC	1 cut(s)	278
BtsCI	GGATG	2 cut(s)	14, 286
BtsI	GCAGTG	1 cut(s)	237
BtsIMutI	CAGTG	1 cut(s)	237
BveI	ACCTGC	1 cut(s)	201
Cac8I	GCNNGC	3 cut(s)	208, 311, 340
CviJI	RGCY	8 cut(s)	43, 71, 86, 116, 206, 278, 309, 376
CviKI_1	RGCY	8 cut(s)	43, 71, 86, 116, 206, 278, 309, 376
DdeI	CTNAG	2 cut(s)	117, 369
DpnI	GATC	3 cut(s)	221, 318, 353
DpnII	GATC	3 cut(s)	219, 316, 351
EcoRI	GAATTC	1 cut(s)	137
EcoRII	CCWGG	1 cut(s)	421
FaiI	YATR	3 cut(s)	65, 357, 445
FauI	CCCGC	1 cut(s)	55
FokI	GGATG	1 cut(s)	273
GsaI	CCCAGC	1 cut(s)	414
HaeIII	GGCC	1 cut(s)	278
HapII	CCGG	1 cut(s)	175
HindIII	AAGCTT	1 cut(s)	84
HinfI	GANTC	2 cut(s)	170, 301
HpaII	CCGG	1 cut(s)	175
HphI	GGTGA	1 cut(s)	133
Hpy188I	TCNGA	2 cut(s)	295, 306
Hpy188III	TCNNGA	5 cut(s)	56, 110, 223, 251, 349
HpyAV	CCTTC	3 cut(s)	30, 37, 220
HpyCH4V	TGCA	1 cut(s)	210
HpyF3I	CTNAG	2 cut(s)	117, 369
Kzo9I	GATC	3 cut(s)	219, 316, 351
LmnI	GCTCC	1 cut(s)	48
MalI	GATC	3 cut(s)	221, 318, 353
MboI	GATC	3 cut(s)	219, 316, 351
MboII	GAAGA	4 cut(s)	90, 190, 206, 311
MflI	RGATCY	1 cut(s)	351
MluCI	AATT	2 cut(s)	129, 137
MlyI	GAGTC	1 cut(s)	164
MnlI	CCTC	8 cut(s)	28, 33, 106, 112, 142, 179, 268, 375
MroXI	GAANNNNTTC	1 cut(s)	300
MspI	CCGG	1 cut(s)	175
MspR9I	CCNGG	2 cut(s)	175, 423
MvaI	CCWGG	1 cut(s)	423
NciI	CCSGG	1 cut(s)	175
NdeII	GATC	3 cut(s)	219, 316, 351
NlaIV	GGNNCC	2 cut(s)	44, 427
PdmI	GAANNNNTTC	1 cut(s)	300
PfeI	GAWTC	1 cut(s)	301
PfoI	TCCNGGA	1 cut(s)	173
PleI	GAGTC	1 cut(s)	164
PpsI	GAGTC	1 cut(s)	164
Psp6I	CCWGG	1 cut(s)	421
PspFI	CCCAGC	1 cut(s)	410
PspGI	CCWGG	1 cut(s)	421
PspN4I	GGNNCC	2 cut(s)	44, 427
PsuI	RGATCY	1 cut(s)	351
Sau3AI	GATC	3 cut(s)	219, 316, 351
SchI	GAGTC	1 cut(s)	164
ScrFI	CCNGG	2 cut(s)	175, 423
SetI	ASST	6 cut(s)	73, 88, 204, 215, 311, 378
Sse9I	AATT	2 cut(s)	129, 137
SsiI	CCGC	2 cut(s)	48, 144
StyD4I	CCNGG	2 cut(s)	173, 421
TaqI	TCGA	2 cut(s)	57, 244
TasI	AATT	2 cut(s)	129, 137
TfiI	GAWTC	1 cut(s)	301
TscAI	CASTG	1 cut(s)	237
TspDTI	ATGAA	2 cut(s)	141, 275
TspRI	CASTG	1 cut(s)	237
XapI	RAATTY	2 cut(s)	129, 137
XmnI	GAANNNNTTC	1 cut(s)	300

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.