Rh2CG632400

No description available

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_samantha
Chr2C
OG0001373
Physical Location & Seq
Reverse (-)
80450511 .. 80510907
60397 bp
Loading structure...
UTR
Exon/CDS
Intron
Rh2CG632400.1

Sequence Viewer

Length: 858 bp
ATGATTGATGATGTCAATGAAGAAGGAGAAGCCTCCTATGGATTTGGGCACAAAACTGGGGGTTTGTACATGATGGTCAGGCTTGGACGCCCACCTCACTCAACTAAGAATCAAGATTTTATATGGTACTGTGATACTATTCTCGAGGGAGGACGTTGGAGGAGATCTGAGGTTACGGCCGCATGTCTTTTTGTACAGGGTAGACCTGCAACATATGTCTCCCAGAATCACAAAATGTATTGGAAAGCAACAACCGAAGATGGGGTTTGCATCATTGCCTTTGACTTAGAGACTGAGCATTTGGGTGAATTGGTAGCCCCTCTTAAACCTAACAGAGACATGGTGCTTGGCCATGGGTTTAAGGGGCAGCTTGCTGCAGCAATCTATGTTCCTCCTACCGGTAGAGAGGGAAGACTCTCTTTCTTGCATATCTGGGTGCTGCTGAAGGAACTTGAGTGGTACCGTTGGCACAAGCTGGTCACTTTACCCTCCAGTGTTTACACTAGTGCAGATGAAGTCTTCATACCCTTGGTGTTCTACTATGGCAAGGAAGAAGGAGCGATCAATCTTCTCTTTCACTTGAATATGATCGAAGTTTTGCATATCATACCAGCCGTGCATAAGCATCAGGACCATGGTGTACCATTAAATCATGGCTTCACGAGAGTAGATATCCCCTCTGCCATTCCCTCAGGAATGCAGATGGAGCTTGGATCCTGGAGGAGGTTCCAAGCAACCCCTCTTGGGAATCTCCTCCACCGATCGAAGAAGCACAACGGGCACAAATCTGAAGAGGACAAGAACAACAGAGGCAAGAGAATCATCAGGCTTTGTTGTGAAGATGATGATATAGGATGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
No domains found.

Protein Analysis

285

Amino Acids

32.49

Weight (kDa)

6.76

Isoelectric Point (pI)

49.32

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
Acc36I ACCTGC 1 cut(s) 214
Acc65I GGTACC 1 cut(s) 459
AccB1I GGYRCC 1 cut(s) 459
AccI GTMKAC 1 cut(s) 202
AciI CCGC 1 cut(s) 180
AclWI GGATC 2 cut(s) 708, 721
AcoI YGGCCR 2 cut(s) 177, 349
AcuI CTGAAG 2 cut(s) 464, 810
AcyI GRCGYC 1 cut(s) 88
AfaI GTAC 5 cut(s) 68, 128, 195, 461, 642
AfiI CCNNNNNNNGG 4 cut(s) 261, 398, 723, 744
AgeI ACCGGT 1 cut(s) 398
AgsI TTSAA 1 cut(s) 583
AhlI ACTAGT 1 cut(s) 503
AjnI CCWGG 1 cut(s) 716
AluBI AGCT 3 cut(s) 370, 475, 709
AluI AGCT 3 cut(s) 370, 475, 709
Alw26I GTCTC 3 cut(s) 223, 284, 330
AlwI GGATC 2 cut(s) 708, 721
Ama87I CYCGRG 1 cut(s) 143
AoxI GGCC 2 cut(s) 177, 349
ApeKI GCWGC 4 cut(s) 367, 374, 377, 439
ArsI GACNNNNNNTTYG 2 cut(s) 283, 315
AsiGI ACCGGT 1 cut(s) 398
Asp718I GGTACC 1 cut(s) 459
AspS9I GGNCC 1 cut(s) 631
AsuHPI GGTGA 1 cut(s) 317
AvaI CYCGRG 1 cut(s) 143
AvaII GGWCC 1 cut(s) 631
AxyI CCTNAGG 1 cut(s) 691
BaeGI GKGCMC 2 cut(s) 51, 783
BalI TGGCCA 1 cut(s) 351
BamHI GGATCC 1 cut(s) 713
BanI GGYRCC 1 cut(s) 459
BarI GAAGNNNNNNTAC 2 cut(s) 507, 539
BauI CACGAG 1 cut(s) 661
BbsI GAAGAC 2 cut(s) 418, 511
BbvI GCAGC 4 cut(s) 361, 379, 389, 426
BccI CCATC 3 cut(s) 67, 254, 697
BceAI ACGGC 2 cut(s) 192, 599
BciT130I CCWGG 1 cut(s) 718
BcoDI GTCTC 3 cut(s) 223, 284, 330
BcuI ACTAGT 1 cut(s) 503
BfaI CTAG 1 cut(s) 504
BfmI CTRYAG 1 cut(s) 375
BfuAI ACCTGC 1 cut(s) 214
BglII AGATCT 1 cut(s) 164
BisI GCNGC 5 cut(s) 180, 368, 375, 378, 440
BlsI GCNGC 5 cut(s) 181, 369, 376, 379, 441
Bme1390I CCNGG 1 cut(s) 718
Bme18I GGWCC 1 cut(s) 631
BmeT110I CYCGRG 1 cut(s) 143
BmgT120I GGNCC 1 cut(s) 631
BmiI GGNNCC 3 cut(s) 461, 715, 728
BmrFI CCNGG 1 cut(s) 718
BmrI ACTGGG 1 cut(s) 66
BmsI GCATC 2 cut(s) 279, 634
BmuI ACTGGG 1 cut(s) 66
BpiI GAAGAC 2 cut(s) 418, 511
BpmI CTGGAG 2 cut(s) 475, 739
BpuEI CTTGAG 1 cut(s) 473
BsaHI GRCGYC 1 cut(s) 88
BsaJI CCNNGG 3 cut(s) 352, 528, 634
BsaWI WCCGGW 1 cut(s) 398
Bsc4I CCNNNNNNNGG 4 cut(s) 261, 398, 723, 744
Bse118I RCCGGY 1 cut(s) 398
Bse1I ACTGG 2 cut(s) 61, 492
Bse21I CCTNAGG 1 cut(s) 691
Bse3DI GCAATG 1 cut(s) 273
BseBI CCWGG 1 cut(s) 718
BseDI CCNNGG 3 cut(s) 352, 528, 634
BseLI CCNNNNNNNGG 4 cut(s) 261, 398, 723, 744
BseMI GCAATG 1 cut(s) 273
BseMII CTCAG 3 cut(s) 159, 285, 705
BseNI ACTGG 2 cut(s) 61, 492
BseRI GAGGAG 3 cut(s) 175, 736, 743
BseSI GKGCMC 2 cut(s) 51, 783
BseX3I CGGCCG 1 cut(s) 177
BseXI GCAGC 4 cut(s) 361, 379, 389, 426
BsgI GTGCAG 1 cut(s) 528
Bsh1285I CGRYCG 2 cut(s) 180, 764
BshFI GGCC 2 cut(s) 179, 351
BshNI GGYRCC 1 cut(s) 459
BshTI ACCGGT 1 cut(s) 398
BsiEI CGRYCG 2 cut(s) 180, 764
BsiHKCI CYCGRG 1 cut(s) 143
BsiSI CCGG 1 cut(s) 399
BslI CCNNNNNNNGG 4 cut(s) 261, 398, 723, 744
BsmAI GTCTC 3 cut(s) 223, 284, 330
BsmI GAATGC 1 cut(s) 702
BsnI GGCC 2 cut(s) 179, 351
BsoBI CYCGRG 1 cut(s) 143
Bsp1286I GDGCHC 2 cut(s) 51, 783
Bsp1407I TGTACA 2 cut(s) 66, 193
Bsp143I GATC 5 cut(s) 164, 561, 588, 713, 761
Bsp19I CCATGG 2 cut(s) 352, 634
BspACI CCGC 1 cut(s) 180
BspANI GGCC 2 cut(s) 179, 351
BspCNI CTCAG 3 cut(s) 160, 286, 704
BspLI GGNNCC 3 cut(s) 461, 715, 728
BspMAI CTGCAG 1 cut(s) 379
BspMI ACCTGC 1 cut(s) 214
BspPI GGATC 2 cut(s) 708, 721
BspT107I GGYRCC 1 cut(s) 459
BsrDI GCAATG 1 cut(s) 273
BsrFI RCCGGY 1 cut(s) 398
BsrGI TGTACA 2 cut(s) 66, 193
BsrI ACTGG 2 cut(s) 61, 492
BssAI RCCGGY 1 cut(s) 398
BssECI CCNNGG 3 cut(s) 352, 528, 634
BssMI GATC 5 cut(s) 164, 561, 588, 713, 761
BssNI GRCGYC 1 cut(s) 88
BssSI CACGAG 1 cut(s) 661
BssT1I CCWWGG 3 cut(s) 352, 528, 634
Bst2BI CACGAG 1 cut(s) 661
Bst2UI CCWGG 1 cut(s) 718
Bst4CI ACNGT 2 cut(s) 131, 464
Bst6I CTCTTC 1 cut(s) 786
BstACI GRCGYC 1 cut(s) 88
BstAUI TGTACA 2 cut(s) 66, 193
BstC8I GCNNGC 1 cut(s) 372
BstDEI CTNAG 5 cut(s) 105, 168, 286, 294, 691
BstDSI CCRYGG 2 cut(s) 352, 634
BstENI CCTNNNNNAGG 1 cut(s) 721
BstKTI GATC 5 cut(s) 167, 564, 591, 716, 764
BstMAI GTCTC 3 cut(s) 223, 284, 330
BstMBI GATC 5 cut(s) 164, 561, 588, 713, 761
BstMCI CGRYCG 2 cut(s) 180, 764
BstMWI GCNNNNNNNGC 2 cut(s) 706, 778
BstNI CCWGG 1 cut(s) 718
BstNSI RCATGY 1 cut(s) 186
BstSCI CCNGG 1 cut(s) 716
BstSFI CTRYAG 1 cut(s) 375
BstSLI GKGCMC 2 cut(s) 51, 783
BstV1I GCAGC 4 cut(s) 361, 379, 389, 426
BstV2I GAAGAC 2 cut(s) 418, 511
BstX2I RGATCY 2 cut(s) 164, 713
BstYI RGATCY 2 cut(s) 164, 713
BstZI CGGCCG 1 cut(s) 177
Bsu36I CCTNAGG 1 cut(s) 691
BsuRI GGCC 2 cut(s) 179, 351
BtgI CCRYGG 2 cut(s) 352, 634
BtsIMutI CAGTG 1 cut(s) 499
BveI ACCTGC 1 cut(s) 214
Cac8I GCNNGC 1 cut(s) 372
Cfr10I RCCGGY 1 cut(s) 398
Cfr13I GGNCC 1 cut(s) 631
CseI GACGC 1 cut(s) 96
Csp6I GTAC 5 cut(s) 67, 127, 194, 460, 641
CspAI ACCGGT 1 cut(s) 398
CviAII CATG 6 cut(s) 70, 183, 340, 353, 635, 653
CviQI GTAC 5 cut(s) 67, 127, 194, 460, 641
DdeI CTNAG 5 cut(s) 105, 168, 286, 294, 691
DpnI GATC 5 cut(s) 166, 563, 590, 715, 763
DpnII GATC 5 cut(s) 164, 561, 588, 713, 761
EaeI YGGCCR 2 cut(s) 177, 349
EagI CGGCCG 1 cut(s) 177
Eam1104I CTCTTC 1 cut(s) 786
EarI CTCTTC 1 cut(s) 786
EclXI CGGCCG 1 cut(s) 177
Eco130I CCWWGG 3 cut(s) 352, 528, 634
Eco32I GATATC 1 cut(s) 673
Eco47I GGWCC 1 cut(s) 631
Eco52I CGGCCG 1 cut(s) 177
Eco57I CTGAAG 2 cut(s) 464, 810
Eco81I CCTNAGG 1 cut(s) 691
Eco88I CYCGRG 1 cut(s) 143
EcoNI CCTNNNNNAGG 1 cut(s) 721
EcoRII CCWGG 1 cut(s) 716
EcoRV GATATC 1 cut(s) 673
EcoT14I CCWWGG 3 cut(s) 352, 528, 634
ErhI CCWWGG 3 cut(s) 352, 528, 634
FaeI CATG 6 cut(s) 73, 186, 343, 356, 638, 656
FalI AAGNNNNNCTT 2 cut(s) 403, 435
FatI CATG 6 cut(s) 69, 182, 339, 352, 634, 652
FauNDI CATATG 1 cut(s) 214
FblI GTMKAC 1 cut(s) 202
Fnu4HI GCNGC 5 cut(s) 180, 368, 375, 378, 440
Fsp4HI GCNGC 5 cut(s) 180, 368, 375, 378, 440
FspBI CTAG 1 cut(s) 504
GluI GCNGC 5 cut(s) 180, 368, 375, 378, 440
GsuI CTGGAG 2 cut(s) 475, 739
HaeIII GGCC 2 cut(s) 179, 351
HapII CCGG 1 cut(s) 399
HgaI GACGC 1 cut(s) 96
Hin1I GRCGYC 1 cut(s) 88
Hin1II CATG 6 cut(s) 73, 186, 343, 356, 638, 656
HinfI GANTC 5 cut(s) 109, 226, 414, 748, 819
HpaII CCGG 1 cut(s) 399
HphI GGTGA 1 cut(s) 317
Hpy166II GTNNAC 3 cut(s) 203, 499, 641
Hpy188I TCNGA 2 cut(s) 169, 790
Hpy188III TCNNGA 5 cut(s) 113, 143, 629, 661, 693
Hpy8I GTNNAC 3 cut(s) 203, 499, 641
HpyAV CCTTC 3 cut(s) 17, 439, 548
HpyCH4III ACNGT 2 cut(s) 131, 464
HpyCH4IV ACGT 1 cut(s) 154
HpyCH4V TGCA 8 cut(s) 209, 270, 377, 427, 509, 601, 619, 700
HpyF10VI GCNNNNNNNGC 2 cut(s) 706, 778
HpyF3I CTNAG 5 cut(s) 105, 168, 286, 294, 691
HpySE526I ACGT 1 cut(s) 154
Hsp92I GRCGYC 1 cut(s) 88
Hsp92II CATG 6 cut(s) 73, 186, 343, 356, 638, 656
KpnI GGTACC 1 cut(s) 463
Kzo9I GATC 5 cut(s) 164, 561, 588, 713, 761
LmnI GCTCC 2 cut(s) 557, 706
Lsp1109I GCAGC 4 cut(s) 361, 379, 389, 426
LweI GCATC 2 cut(s) 279, 634
MaeI CTAG 1 cut(s) 504
MaeII ACGT 1 cut(s) 154
MaeIII GTNAC 2 cut(s) 172, 478
MalI GATC 5 cut(s) 166, 563, 590, 715, 763
MboI GATC 5 cut(s) 164, 561, 588, 713, 761
MboII GAAGA 9 cut(s) 32, 269, 423, 511, 560, 563, 778, 803, 851
MflI RGATCY 2 cut(s) 164, 713
MhlI GDGCHC 2 cut(s) 51, 783
MlsI TGGCCA 1 cut(s) 351
MluCI AATT 1 cut(s) 308
MluNI TGGCCA 1 cut(s) 351
MlyI GAGTC 1 cut(s) 408
MmeI TCCRAC 1 cut(s) 137
Mox20I TGGCCA 1 cut(s) 351
MscI TGGCCA 1 cut(s) 351
MseI TTAA 3 cut(s) 324, 360, 647
MslI CAYNNNNRTG 1 cut(s) 303
Msp20I TGGCCA 1 cut(s) 351
MspI CCGG 1 cut(s) 399
MspR9I CCNGG 1 cut(s) 718
Mva1269I GAATGC 1 cut(s) 702
MvaI CCWGG 1 cut(s) 718
MwoI GCNNNNNNNGC 2 cut(s) 706, 778
NcoI CCATGG 2 cut(s) 352, 634
NdeI CATATG 1 cut(s) 214
NdeII GATC 5 cut(s) 164, 561, 588, 713, 761
NlaIII CATG 6 cut(s) 73, 186, 343, 356, 638, 656
NlaIV GGNNCC 3 cut(s) 461, 715, 728
NmuCI GTSAC 1 cut(s) 478
NspI RCATGY 1 cut(s) 186
PaeR7I CTCGAG 1 cut(s) 143
PctI GAATGC 1 cut(s) 702
PfeI GAWTC 4 cut(s) 109, 226, 748, 819
PfoI TCCNGGA 1 cut(s) 716
PinAI ACCGGT 1 cut(s) 398
PkrI GCNGC 5 cut(s) 181, 369, 376, 379, 441
Ple19I CGATCG 1 cut(s) 764
PleI GAGTC 1 cut(s) 408
PpsI GAGTC 1 cut(s) 408
Psp6I CCWGG 1 cut(s) 716
PspGI CCWGG 1 cut(s) 716
PspN4I GGNNCC 3 cut(s) 461, 715, 728
PspPI GGNCC 1 cut(s) 631
PstI CTGCAG 1 cut(s) 379
PsuI RGATCY 2 cut(s) 164, 713
PvuI CGATCG 1 cut(s) 764
RsaI GTAC 5 cut(s) 68, 128, 195, 461, 642
RsaNI GTAC 5 cut(s) 67, 127, 194, 460, 641
RseI CAYNNNNRTG 1 cut(s) 303
SaqAI TTAA 3 cut(s) 324, 360, 647
SatI GCNGC 5 cut(s) 180, 368, 375, 378, 440
Sau3AI GATC 5 cut(s) 164, 561, 588, 713, 761
Sau96I GGNCC 1 cut(s) 631
SchI GAGTC 1 cut(s) 408
ScrFI CCNGG 1 cut(s) 718
SduI GDGCHC 2 cut(s) 51, 783
SetI ASST 9 cut(s) 97, 157, 174, 208, 331, 372, 477, 711, 728
SfaNI GCATC 2 cut(s) 279, 634
SfcI CTRYAG 1 cut(s) 375
Sfr274I CTCGAG 1 cut(s) 143
SinI GGWCC 1 cut(s) 631
SlaI CTCGAG 1 cut(s) 143
SmiMI CAYNNNNRTG 1 cut(s) 303
SmlI CTYRAG 2 cut(s) 143, 452
SmoI CTYRAG 2 cut(s) 143, 452
SpeI ACTAGT 1 cut(s) 503
Sse9I AATT 1 cut(s) 308
SsiI CCGC 1 cut(s) 180
SspMI CTAG 1 cut(s) 504
StyD4I CCNGG 1 cut(s) 716
StyI CCWWGG 3 cut(s) 352, 528, 634
TaaI ACNGT 2 cut(s) 131, 464
TaiI ACGT 1 cut(s) 157
TaqI TCGA 3 cut(s) 144, 591, 764
TasI AATT 1 cut(s) 308
TatI WGTACW 2 cut(s) 66, 193
TauI GCSGC 1 cut(s) 182
TfiI GAWTC 4 cut(s) 109, 226, 748, 819
Tru1I TTAA 3 cut(s) 324, 360, 647
Tru9I TTAA 3 cut(s) 324, 360, 647
TscAI CASTG 1 cut(s) 499
TseFI GTSAC 1 cut(s) 478
TseI GCWGC 4 cut(s) 367, 374, 377, 439
Tsp45I GTSAC 1 cut(s) 478
TspDTI ATGAA 3 cut(s) 33, 511, 528
TspRI CASTG 1 cut(s) 499
VpaK11BI GGWCC 1 cut(s) 631
XagI CCTNNNNNAGG 1 cut(s) 721
XceI RCATGY 1 cut(s) 186
XhoI CTCGAG 1 cut(s) 143
XmiI GTMKAC 1 cut(s) 202
XspI CTAG 1 cut(s) 504
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.