Basic Information

Type: gene

Biological Identity

Species

malus_domestica

Chromosome

Chr10

Orthogroup ID

OG0001373

Physical Location & Seq

Genomic Coordinates Reverse (-)

22293546 .. 22294022

Gene Structure 477 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

MD10G1138200.v1.1.491

Sequence Viewer

CDS Protein Promoter (2k)

Length: 477 bp

ATGACGGTTGACGTTTCCTCCGCGGGATCCTTCAAACGAAGGCGGCTCATCGGCGCCGTCGATCACATCGCCAGCATCGATTGCATGGCCAATATCGAGGAGAGCGCAGACGAATTCTACGACTTCACCCCAGAGGACTACTACCGCATTCAACGCACGCGGCAGAAAGAAGACAAGTTCCTCAAAACGCAGAAGATTAGAGAGGCAGAGGACGCAAAACGCAGGTCGAAGATGACAAGGGCGGTGATTAGGGTTCGGTTTCCGGATAATCGCACAGTGGAGGCAACTTTTCACCCGTCGGATAAAATTCAGAGCTTGGTCGATTACCTGAGGAAAGTTGGTGCTCGACCGGAGTTACCGTTTTACTTATTTACTGCTCCGCCGAAGCAGGTGATCAGAGAAATGTCGCAGGATTTTTACTCTGCTGGATTTGTTCCCGGTGCAGTTGTGCATCTTTCGTACGGTGCACCGAACTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0005488 GO:0005515 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0005654 GO:0005886 GO:0008150 GO:0009893 GO:0009987 GO:0010604 GO:0016020 GO:0016043 GO:0019222 GO:0019899 GO:0022411 GO:0031323 GO:0031325 GO:0031399 GO:0031401 GO:0031974 GO:0031981 GO:0032268 GO:0032270 GO:0032501 GO:0032502 GO:0032984 GO:0035265 GO:0040007 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043233 GO:0043933 GO:0044422 GO:0044424 GO:0044428 GO:0044446 GO:0044464 GO:0048518 GO:0048522 GO:0048589 GO:0050789 GO:0050794 GO:0051117 GO:0051171 GO:0051173 GO:0051246 GO:0051247 GO:0060255 GO:0065007 GO:0070013 GO:0071840 GO:0071944 GO:0080090

KEGG Pathways

Metabolic & Signaling

ko05202 map05202

Pfam Domains

Protein Families

UBX

Protein Analysis

159

Amino Acids

18.21

Weight (kDa)

9.21

Isoelectric Point (pI)

68.69

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
UBX	PF00789	79 - 138	7e-07	UBX domain

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0001373)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT3G27310
fragaria_vesca	FvH4_2g09210 FvH4_3g43800 FvH4_6g52650 FvH4_6g52820 FvH4_6g52860
malus_domestica	MD09G1017300.v1.1 MD10G1138200.v1.1 MD17G1018100.v1.1
prunus_persica	Prupe.3G299600_v2.0.a1 Prupe.3G299600_v2.0.a1 Prupe.8G176800_v2.0.a1
pyrus_communis	pycom05g12990 pycom111g01420
rosa_chinensis	RchiOBHm_Chr2g0174181 RchiOBHm_Chr2g0174441 RchiOBHm_Chr6g0265061
rosa_laevigata	RLG00000014212 RLG00000022254 RLG00000022266 RLG00000022272
rosa_multiflora	Rmu_sc0000954.1_g000001 Rmu_sc0001533.1_g000005 Rmu_sc0003649.1_g000013 Rmu_sc0003649.1_g000018 Rmu_sc0003649.1_g000021 Rmu_ssc0000198.1_g000003 Rmu_ssc0000359.1_g000079
rosa_roxburghii	Rroxscaffold_175G00432130 Rroxscaffold_2G00078080 Rroxscaffold_2G00078110 Rroxscaffold_2G00078140 Rroxscaffold_2G00078190 Rroxscaffold_2G00078380
rosa_rugosa	Rorug02G0575700 Rorug02G0577500 Rorug06G0013300
rosa_samantha	Rh2AG655100 Rh2AG658300 Rh2AG658500 Rh2BG666300 Rh2BG669300 Rh2BG669500 Rh2CG630500 Rh2CG632400 Rh2CG632500 Rh2DG680900 Rh2DG683100 Rh2DG683200
rosa_wichuraiana	Rw2G053770 Rw2G053910 Rw2G053930 Rw6G011780

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AarI	CACCTGC	1 cut(s)	379
Acc36I	ACCTGC	2 cut(s)	213, 379
AccB1I	GGYRCC	1 cut(s)	53
AccII	CGCG	2 cut(s)	23, 160
AccIII	TCCGGA	1 cut(s)	262
AciI	CCGC	7 cut(s)	21, 23, 43, 145, 160, 242, 380
AclWI	GGATC	2 cut(s)	21, 34
AcoI	YGGCCR	1 cut(s)	87
AcsI	RAATTY	2 cut(s)	113, 306
AcyI	GRCGYC	1 cut(s)	54
AfaI	GTAC	1 cut(s)	461
AgsI	TTSAA	2 cut(s)	34, 152
AluBI	AGCT	1 cut(s)	315
AluI	AGCT	1 cut(s)	315
Alw21I	GWGCWC	2 cut(s)	346, 469
Alw44I	GTGCAC	1 cut(s)	465
AlwI	GGATC	2 cut(s)	21, 34
Aor13HI	TCCGGA	1 cut(s)	262
AoxI	GGCC	1 cut(s)	87
ApaLI	GTGCAC	1 cut(s)	465
ApoI	RAATTY	2 cut(s)	113, 306
ArsI	GACNNNNNNTTYG	2 cut(s)	209, 241
AspLEI	GCGC	2 cut(s)	56, 107
AsuC2I	CCSGG	1 cut(s)	438
AsuHPI	GGTGA	4 cut(s)	118, 256, 284, 403
AxyI	CCTNAGG	1 cut(s)	329
BaeGI	GKGCMC	1 cut(s)	469
BalI	TGGCCA	1 cut(s)	89
BamHI	GGATCC	1 cut(s)	26
BanI	GGYRCC	1 cut(s)	53
BbsI	GAAGAC	1 cut(s)	177
Bbv12I	GWGCWC	2 cut(s)	346, 469
BceAI	ACGGC	1 cut(s)	41
BclI	TGATCA	1 cut(s)	393
BcnI	CCSGG	1 cut(s)	438
BfoI	RGCGCY	1 cut(s)	57
BfuAI	ACCTGC	2 cut(s)	213, 379
BisI	GCNGC	2 cut(s)	44, 161
BlsI	GCNGC	2 cut(s)	45, 162
Bme1390I	CCNGG	1 cut(s)	438
BmiI	GGNNCC	2 cut(s)	28, 55
BmrFI	CCNGG	1 cut(s)	438
BmsI	GCATC	2 cut(s)	84, 460
BpiI	GAAGAC	1 cut(s)	177
BpuMI	CCSGG	1 cut(s)	438
Bsa29I	ATCGAT	1 cut(s)	78
BsaHI	GRCGYC	1 cut(s)	54
BsaJI	CCNNGG	1 cut(s)	21
BsaWI	WCCGGW	2 cut(s)	262, 349
BsaXI	ACNNNNNCTCC	3 cut(s)	32, 344, 374
Bse21I	CCTNAGG	1 cut(s)	329
BseAI	TCCGGA	1 cut(s)	262
BseCI	ATCGAT	1 cut(s)	78
BseDI	CCNNGG	1 cut(s)	21
BseMII	CTCAG	1 cut(s)	320
BseRI	GAGGAG	1 cut(s)	113
BseSI	GKGCMC	1 cut(s)	469
BsgI	GTGCAG	1 cut(s)	462
Bsh1236I	CGCG	2 cut(s)	23, 160
Bsh1285I	CGRYCG	1 cut(s)	350
BshFI	GGCC	1 cut(s)	89
BshNI	GGYRCC	1 cut(s)	53
BshVI	ATCGAT	1 cut(s)	78
BsiEI	CGRYCG	1 cut(s)	350
BsiHKAI	GWGCWC	2 cut(s)	346, 469
BsiSI	CCGG	3 cut(s)	263, 350, 438
BsiWI	CGTACG	1 cut(s)	459
BsmI	GAATGC	1 cut(s)	147
BsnI	GGCC	1 cut(s)	89
Bsp1286I	GDGCHC	2 cut(s)	346, 469
Bsp13I	TCCGGA	1 cut(s)	262
Bsp143I	GATC	3 cut(s)	26, 61, 393
BspACI	CCGC	7 cut(s)	21, 23, 43, 145, 160, 242, 380
BspANI	GGCC	1 cut(s)	89
BspCNI	CTCAG	1 cut(s)	321
BspDI	ATCGAT	1 cut(s)	78
BspEI	TCCGGA	1 cut(s)	262
BspFNI	CGCG	2 cut(s)	23, 160
BspLI	GGNNCC	2 cut(s)	28, 55
BspMI	ACCTGC	2 cut(s)	213, 379
BspPI	GGATC	2 cut(s)	21, 34
BspT107I	GGYRCC	1 cut(s)	53
BssECI	CCNNGG	1 cut(s)	21
BssMI	GATC	3 cut(s)	26, 61, 393
BssNI	GRCGYC	1 cut(s)	54
Bst4CI	ACNGT	4 cut(s)	7, 277, 360, 464
BstACI	GRCGYC	1 cut(s)	54
BstAPI	GCANNNNNTGC	1 cut(s)	81
BstC8I	GCNNGC	2 cut(s)	73, 158
BstDEI	CTNAG	1 cut(s)	329
BstDSI	CCRYGG	1 cut(s)	21
BstFNI	CGCG	2 cut(s)	23, 160
BstH2I	RGCGCY	1 cut(s)	57
BstHHI	GCGC	2 cut(s)	56, 107
BstKTI	GATC	3 cut(s)	29, 64, 396
BstMBI	GATC	3 cut(s)	26, 61, 393
BstMCI	CGRYCG	1 cut(s)	350
BstMWI	GCNNNNNNNGC	3 cut(s)	81, 153, 212
BstSCI	CCNGG	1 cut(s)	436
BstSLI	GKGCMC	1 cut(s)	469
BstUI	CGCG	2 cut(s)	23, 160
BstV2I	GAAGAC	1 cut(s)	177
BstX2I	RGATCY	1 cut(s)	26
BstYI	RGATCY	1 cut(s)	26
Bsu15I	ATCGAT	1 cut(s)	78
Bsu36I	CCTNAGG	1 cut(s)	329
BsuRI	GGCC	1 cut(s)	89
BsuTUI	ATCGAT	1 cut(s)	78
BtgI	CCRYGG	1 cut(s)	21
BtgZI	GCGATG	1 cut(s)	52
BtsIMutI	CAGTG	1 cut(s)	282
BveI	ACCTGC	2 cut(s)	213, 379
Cac8I	GCNNGC	2 cut(s)	73, 158
CfoI	GCGC	2 cut(s)	56, 107
Cfr42I	CCGCGG	1 cut(s)	24
ClaI	ATCGAT	1 cut(s)	78
CseI	GACGC	1 cut(s)	221
Csp6I	GTAC	1 cut(s)	460
CviAII	CATG	1 cut(s)	85
CviJI	RGCY	3 cut(s)	46, 89, 315
CviKI_1	RGCY	3 cut(s)	46, 89, 315
CviQI	GTAC	1 cut(s)	460
DdeI	CTNAG	1 cut(s)	329
DinI	GGCGCC	1 cut(s)	55
DpnI	GATC	3 cut(s)	28, 63, 395
DpnII	GATC	3 cut(s)	26, 61, 393
EaeI	YGGCCR	1 cut(s)	87
EciI	GGCGGA	1 cut(s)	369
Eco81I	CCTNAGG	1 cut(s)	329
EcoRI	GAATTC	1 cut(s)	113
EgeI	GGCGCC	1 cut(s)	55
EheI	GGCGCC	1 cut(s)	55
FaeI	CATG	1 cut(s)	88
FaiI	YATR	1 cut(s)	86
FatI	CATG	1 cut(s)	84
FauI	CCCGC	1 cut(s)	16
FbaI	TGATCA	1 cut(s)	393
Fnu4HI	GCNGC	2 cut(s)	44, 161
Fsp4HI	GCNGC	2 cut(s)	44, 161
GlaI	GCGC	2 cut(s)	55, 106
GluI	GCNGC	2 cut(s)	44, 161
HaeII	RGCGCY	1 cut(s)	57
HaeIII	GGCC	1 cut(s)	89
HapII	CCGG	3 cut(s)	263, 350, 438
HgaI	GACGC	1 cut(s)	221
HhaI	GCGC	2 cut(s)	56, 107
Hin1I	GRCGYC	1 cut(s)	54
Hin1II	CATG	1 cut(s)	88
Hin6I	GCGC	2 cut(s)	54, 105
HinP1I	GCGC	2 cut(s)	54, 105
HincII	GTYRAC	1 cut(s)	10
HindII	GTYRAC	1 cut(s)	10
HpaII	CCGG	3 cut(s)	263, 350, 438
HphI	GGTGA	4 cut(s)	118, 256, 284, 403
Hpy166II	GTNNAC	2 cut(s)	10, 467
Hpy188I	TCNGA	3 cut(s)	301, 312, 398
Hpy188III	TCNNGA	1 cut(s)	263
Hpy8I	GTNNAC	2 cut(s)	10, 467
Hpy99I	CGWCG	2 cut(s)	62, 301
HpyAV	CCTTC	2 cut(s)	33, 40
HpyCH4III	ACNGT	4 cut(s)	7, 277, 360, 464
HpyCH4IV	ACGT	1 cut(s)	12
HpyCH4V	TGCA	4 cut(s)	84, 443, 451, 467
HpyF10VI	GCNNNNNNNGC	3 cut(s)	81, 153, 212
HpyF3I	CTNAG	1 cut(s)	329
HpySE526I	ACGT	1 cut(s)	12
Hsp92I	GRCGYC	1 cut(s)	54
Hsp92II	CATG	1 cut(s)	88
HspAI	GCGC	2 cut(s)	54, 105
KasI	GGCGCC	1 cut(s)	53
Kpn2I	TCCGGA	1 cut(s)	262
Ksp22I	TGATCA	1 cut(s)	393
KspI	CCGCGG	1 cut(s)	24
Kzo9I	GATC	3 cut(s)	26, 61, 393
LmnI	GCTCC	1 cut(s)	382
LweI	GCATC	2 cut(s)	84, 460
MaeII	ACGT	1 cut(s)	12
MaeIII	GTNAC	1 cut(s)	354
MalI	GATC	3 cut(s)	28, 63, 395
MboI	GATC	3 cut(s)	26, 61, 393
MboII	GAAGA	3 cut(s)	182, 205, 241
MflI	RGATCY	1 cut(s)	26
MhlI	GDGCHC	2 cut(s)	346, 469
MlsI	TGGCCA	1 cut(s)	89
MluCI	AATT	2 cut(s)	113, 306
MluNI	TGGCCA	1 cut(s)	89
Mly113I	GGCGCC	1 cut(s)	54
MmeI	TCCRAC	1 cut(s)	279
MnlI	CCTC	8 cut(s)	28, 91, 127, 191, 196, 202, 274, 324
Mox20I	TGGCCA	1 cut(s)	89
MroI	TCCGGA	1 cut(s)	262
MscI	TGGCCA	1 cut(s)	89
Msp20I	TGGCCA	1 cut(s)	89
MspA1I	CMGCKG	1 cut(s)	23
MspI	CCGG	3 cut(s)	263, 350, 438
MspR9I	CCNGG	1 cut(s)	438
Mva1269I	GAATGC	1 cut(s)	147
MvnI	CGCG	2 cut(s)	23, 160
MwoI	GCNNNNNNNGC	3 cut(s)	81, 153, 212
NarI	GGCGCC	1 cut(s)	54
NciI	CCSGG	1 cut(s)	438
NdeII	GATC	3 cut(s)	26, 61, 393
NlaIII	CATG	1 cut(s)	88
NlaIV	GGNNCC	2 cut(s)	28, 55
PaqCI	CACCTGC	1 cut(s)	379
PcsI	WCGNNNNNNNCGW	3 cut(s)	57, 75, 117
PctI	GAATGC	1 cut(s)	147
Pfl23II	CGTACG	1 cut(s)	459
PkrI	GCNGC	2 cut(s)	45, 162
PluTI	GGCGCC	1 cut(s)	57
PspLI	CGTACG	1 cut(s)	459
PspN4I	GGNNCC	2 cut(s)	28, 55
PsuI	RGATCY	1 cut(s)	26
RsaI	GTAC	1 cut(s)	461
RsaNI	GTAC	1 cut(s)	460
SacII	CCGCGG	1 cut(s)	24
SatI	GCNGC	2 cut(s)	44, 161
Sau3AI	GATC	3 cut(s)	26, 61, 393
ScrFI	CCNGG	1 cut(s)	438
SduI	GDGCHC	2 cut(s)	346, 469
SetI	ASST	5 cut(s)	15, 227, 317, 330, 393
SfaNI	GCATC	2 cut(s)	84, 460
SfoI	GGCGCC	1 cut(s)	55
Sfr303I	CCGCGG	1 cut(s)	24
SgrBI	CCGCGG	1 cut(s)	24
Sse9I	AATT	2 cut(s)	113, 306
SsiI	CCGC	7 cut(s)	21, 23, 43, 145, 160, 242, 380
SspDI	GGCGCC	1 cut(s)	53
StyD4I	CCNGG	1 cut(s)	436
TaaI	ACNGT	4 cut(s)	7, 277, 360, 464
TaiI	ACGT	1 cut(s)	15
TaqI	TCGA	6 cut(s)	60, 78, 96, 227, 321, 346
TasI	AATT	2 cut(s)	113, 306
TauI	GCSGC	2 cut(s)	46, 163
TscAI	CASTG	1 cut(s)	282
TspRI	CASTG	1 cut(s)	282
VneI	GTGCAC	1 cut(s)	465
XapI	RAATTY	2 cut(s)	113, 306

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.