Basic Information

Type: gene

Biological Identity

Species

rosa_roxburghii

Chromosome

GWHEROQ00000175

Orthogroup ID

OG0001373

Physical Location & Seq

Genomic Coordinates Reverse (-)

468226 .. 479463

Gene Structure 11238 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rroxscaffold_175G00432130.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 498 bp

ATGGCCTACACCCTACGATGTGAAATAGGCAAGAAATGTGTTTTTGTGTCTTTATCCCGACCAACTGAAGCAAGGGTTGCTTTCATAAACACATGCTCACCAGCGGGTGTTGATTATAACTGCCGACCTCAGACAATGATGACTGATGTTTCATCCACATTATCCTTCAAAAGAAGGAGGCTCCCCGCCAACCTCGATCGTATAAAAGCTCACATTTTTGAAGCTTCGGCATTTTCTTCAAACTATCAGGAGGCTGAGGACGATGAAATTTTTGAATTCACCGCAGAGGATTATTATCCGGTTTTGAATTCCCGGAAGATGAGAGGGGCAGAAGAACAGGTGGCTTGCAGGTCAAGGATCACGAAGGCAGTGATTAGGGTTCGATGTCCTGATAATGATGAGACATTGTTAGAGGCCAGTTTTCATCCATCGGAAAAGATTCAGAGCTTGCTTGATCTCTCCCGTTCCAGATCTATACTACTCCTCCTAAGAAGCTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0005488 GO:0005515 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0005654 GO:0005886 GO:0008150 GO:0009893 GO:0009987 GO:0010604 GO:0016020 GO:0016043 GO:0019222 GO:0019899 GO:0022411 GO:0031323 GO:0031325 GO:0031399 GO:0031401 GO:0031974 GO:0031981 GO:0032268 GO:0032270 GO:0032501 GO:0032502 GO:0032984 GO:0035265 GO:0040007 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043233 GO:0043933 GO:0044422 GO:0044424 GO:0044428 GO:0044446 GO:0044464 GO:0048518 GO:0048522 GO:0048589 GO:0050789 GO:0050794 GO:0051117 GO:0051171 GO:0051173 GO:0051246 GO:0051247 GO:0060255 GO:0065007 GO:0070013 GO:0071840 GO:0071944 GO:0080090

KEGG Pathways

Metabolic & Signaling

ko05202 map05202

Pfam Domains

Protein Families

UBX

Protein Analysis

165

Amino Acids

18.82

Weight (kDa)

8.23

Isoelectric Point (pI)

68.95

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

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Publication-ready

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Orthologous Genes (Group: OG0001373)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT3G27310
fragaria_vesca	FvH4_2g09210 FvH4_3g43800 FvH4_6g52650 FvH4_6g52820 FvH4_6g52860
malus_domestica	MD09G1017300.v1.1 MD10G1138200.v1.1 MD17G1018100.v1.1
prunus_persica	Prupe.3G299600_v2.0.a1 Prupe.3G299600_v2.0.a1 Prupe.8G176800_v2.0.a1
pyrus_communis	pycom05g12990 pycom111g01420
rosa_chinensis	RchiOBHm_Chr2g0174181 RchiOBHm_Chr2g0174441 RchiOBHm_Chr6g0265061
rosa_laevigata	RLG00000014212 RLG00000022254 RLG00000022266 RLG00000022272
rosa_multiflora	Rmu_sc0000954.1_g000001 Rmu_sc0001533.1_g000005 Rmu_sc0003649.1_g000013 Rmu_sc0003649.1_g000018 Rmu_sc0003649.1_g000021 Rmu_ssc0000198.1_g000003 Rmu_ssc0000359.1_g000079
rosa_roxburghii	Rroxscaffold_175G00432130 Rroxscaffold_2G00078080 Rroxscaffold_2G00078110 Rroxscaffold_2G00078140 Rroxscaffold_2G00078190 Rroxscaffold_2G00078380
rosa_rugosa	Rorug02G0575700 Rorug02G0577500 Rorug06G0013300
rosa_samantha	Rh2AG655100 Rh2AG658300 Rh2AG658500 Rh2BG666300 Rh2BG669300 Rh2BG669500 Rh2CG630500 Rh2CG632400 Rh2CG632500 Rh2DG680900 Rh2DG683100 Rh2DG683200
rosa_wichuraiana	Rw2G053770 Rw2G053910 Rw2G053930 Rw6G011780

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AanI	TTATAA	1 cut(s)	117
Acc36I	ACCTGC	1 cut(s)	339
AciI	CCGC	3 cut(s)	104, 186, 282
AclWI	GGATC	1 cut(s)	365
AcsI	RAATTY	3 cut(s)	267, 275, 307
AcuI	CTGAAG	1 cut(s)	87
AgsI	TTSAA	5 cut(s)	169, 221, 240, 275, 307
AluBI	AGCT	4 cut(s)	209, 224, 447, 495
AluI	AGCT	4 cut(s)	209, 224, 447, 495
Alw26I	GTCTC	1 cut(s)	395
AlwI	GGATC	1 cut(s)	365
AoxI	GGCC	2 cut(s)	3, 414
ApoI	RAATTY	3 cut(s)	267, 275, 307
Asp700I	GAANNNNTTC	1 cut(s)	438
AsuC2I	CCSGG	1 cut(s)	313
AsuHPI	GGTGA	2 cut(s)	90, 271
BbvCI	CCTCAGC	1 cut(s)	255
BccI	CCATC	1 cut(s)	436
BcnI	CCSGG	1 cut(s)	313
BcoDI	GTCTC	1 cut(s)	395
BfuAI	ACCTGC	1 cut(s)	339
BglII	AGATCT	1 cut(s)	470
Bme1390I	CCNGG	1 cut(s)	313
BmiI	GGNNCC	1 cut(s)	182
BmrFI	CCNGG	1 cut(s)	313
Bpu10I	CCTNAGC	1 cut(s)	255
BpuMI	CCSGG	1 cut(s)	313
BsaBI	GATNNNNATC	1 cut(s)	294
BsaWI	WCCGGW	1 cut(s)	298
BsaXI	ACNNNNNCTCC	2 cut(s)	468, 498
Bse1I	ACTGG	1 cut(s)	417
Bse8I	GATNNNNATC	1 cut(s)	294
BseGI	GGATG	2 cut(s)	152, 424
BseJI	GATNNNNATC	1 cut(s)	294
BseMII	CTCAG	2 cut(s)	143, 246
BseNI	ACTGG	1 cut(s)	417
BseRI	GAGGAG	1 cut(s)	473
Bsh1285I	CGRYCG	1 cut(s)	199
BshFI	GGCC	2 cut(s)	5, 416
BsiEI	CGRYCG	1 cut(s)	199
BsiSI	CCGG	2 cut(s)	299, 313
BsmAI	GTCTC	1 cut(s)	395
BsnI	GGCC	2 cut(s)	5, 416
Bsp143I	GATC	4 cut(s)	196, 357, 454, 470
BspACI	CCGC	3 cut(s)	104, 186, 282
BspANI	GGCC	2 cut(s)	5, 416
BspCNI	CTCAG	2 cut(s)	142, 247
BspLI	GGNNCC	1 cut(s)	182
BspMI	ACCTGC	1 cut(s)	339
BspPI	GGATC	1 cut(s)	365
BsrI	ACTGG	1 cut(s)	417
BssMI	GATC	4 cut(s)	196, 357, 454, 470
BstAPI	GCANNNNNTGC	1 cut(s)	77
BstC8I	GCNNGC	2 cut(s)	346, 449
BstDEI	CTNAG	3 cut(s)	129, 255, 488
BstF5I	GGATG	2 cut(s)	152, 424
BstKTI	GATC	4 cut(s)	199, 360, 457, 473
BstMAI	GTCTC	1 cut(s)	395
BstMBI	GATC	4 cut(s)	196, 357, 454, 470
BstMCI	CGRYCG	1 cut(s)	199
BstMWI	GCNNNNNNNGC	1 cut(s)	77
BstNSI	RCATGY	1 cut(s)	96
BstSCI	CCNGG	1 cut(s)	311
BstX2I	RGATCY	1 cut(s)	470
BstYI	RGATCY	1 cut(s)	470
BsuRI	GGCC	2 cut(s)	5, 416
BtsCI	GGATG	2 cut(s)	152, 424
BtsI	GCAGTG	1 cut(s)	375
BtsIMutI	CAGTG	1 cut(s)	375
BveI	ACCTGC	1 cut(s)	339
Cac8I	GCNNGC	2 cut(s)	346, 449
CviAII	CATG	1 cut(s)	93
CviJI	RGCY	9 cut(s)	5, 181, 209, 224, 254, 344, 416, 447, 495
CviKI_1	RGCY	9 cut(s)	5, 181, 209, 224, 254, 344, 416, 447, 495
DdeI	CTNAG	3 cut(s)	129, 255, 488
DpnI	GATC	4 cut(s)	198, 359, 456, 472
DpnII	GATC	4 cut(s)	196, 357, 454, 470
Eco57I	CTGAAG	1 cut(s)	87
EcoRI	GAATTC	2 cut(s)	275, 307
FaeI	CATG	1 cut(s)	96
FaiI	YATR	5 cut(s)	86, 94, 117, 203, 476
FalI	AAGNNNNNCTT	2 cut(s)	64, 96
FatI	CATG	1 cut(s)	92
FauI	CCCGC	2 cut(s)	97, 193
FokI	GGATG	2 cut(s)	139, 411
HaeIII	GGCC	2 cut(s)	5, 416
HapII	CCGG	2 cut(s)	299, 313
Hin1II	CATG	1 cut(s)	96
HindIII	AAGCTT	1 cut(s)	222
HinfI	GANTC	1 cut(s)	439
HpaII	CCGG	2 cut(s)	299, 313
HphI	GGTGA	2 cut(s)	90, 271
Hpy188I	TCNGA	3 cut(s)	132, 433, 444
Hpy188III	TCNNGA	5 cut(s)	57, 248, 361, 389, 468
HpyAV	CCTTC	3 cut(s)	168, 175, 358
HpyCH4V	TGCA	1 cut(s)	348
HpyF10VI	GCNNNNNNNGC	1 cut(s)	77
HpyF3I	CTNAG	3 cut(s)	129, 255, 488
Hsp92II	CATG	1 cut(s)	96
Kzo9I	GATC	4 cut(s)	196, 357, 454, 470
LmnI	GCTCC	1 cut(s)	186
LpnPI	CCDG	9 cut(s)	114, 233, 312, 323, 326, 334, 402, 430, 481
MalI	GATC	4 cut(s)	198, 359, 456, 472
MboI	GATC	4 cut(s)	196, 357, 454, 470
MboII	GAAGA	3 cut(s)	228, 328, 344
MflI	RGATCY	1 cut(s)	470
MluCI	AATT	3 cut(s)	267, 275, 307
MnlI	CCTC	9 cut(s)	138, 171, 203, 244, 250, 280, 317, 406, 494
MroXI	GAANNNNTTC	1 cut(s)	438
MspA1I	CMGCKG	1 cut(s)	104
MspI	CCGG	2 cut(s)	299, 313
MspR9I	CCNGG	1 cut(s)	313
MwoI	GCNNNNNNNGC	1 cut(s)	77
NciI	CCSGG	1 cut(s)	313
NdeII	GATC	4 cut(s)	196, 357, 454, 470
NlaIII	CATG	1 cut(s)	96
NlaIV	GGNNCC	1 cut(s)	182
NspI	RCATGY	1 cut(s)	96
PdmI	GAANNNNTTC	1 cut(s)	438
PfeI	GAWTC	1 cut(s)	439
PfoI	TCCNGGA	1 cut(s)	311
Ple19I	CGATCG	1 cut(s)	199
PsiI	TTATAA	1 cut(s)	117
PspN4I	GGNNCC	1 cut(s)	182
PsuI	RGATCY	1 cut(s)	470
PvuI	CGATCG	1 cut(s)	199
Sau3AI	GATC	4 cut(s)	196, 357, 454, 470
ScrFI	CCNGG	1 cut(s)	313
SetI	ASST	8 cut(s)	130, 195, 211, 226, 342, 353, 449, 497
Sse9I	AATT	3 cut(s)	267, 275, 307
SsiI	CCGC	3 cut(s)	104, 186, 282
StyD4I	CCNGG	1 cut(s)	311
TaqI	TCGA	2 cut(s)	195, 382
TasI	AATT	3 cut(s)	267, 275, 307
TfiI	GAWTC	1 cut(s)	439
TscAI	CASTG	1 cut(s)	375
TspDTI	ATGAA	4 cut(s)	73, 141, 279, 413
TspRI	CASTG	1 cut(s)	375
XapI	RAATTY	3 cut(s)	267, 275, 307
XceI	RCATGY	1 cut(s)	96
XmnI	GAANNNNTTC	1 cut(s)	438

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.