Rmu_sc0003649.1_g000021

No description available

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_multiflora
Rmu_sc0003649.1
OG0001373
Physical Location & Seq
Forward (+)
100851 .. 102056
1206 bp
Loading structure...
UTR
Exon/CDS
Intron
Rmu_sc0003649.1_g000021.1.cds

Sequence Viewer

Length: 1206 bp
atgaaaagacaaggcgatttctgctctccctcttcgtcgtcgtcgaagaagaacaagcttcccacctcccagaaaaaacccgtcgccgttttcaatccattacctccggtgcccagaaacgaccgccatcagaatcaagagaggatctttcttcaccatcaaatccctaaagtgcgtcccaggattcttcatgtcacaggtgatgggcaattggagaccaagaagactgcttcaccgtccggcgatgatcttgtgctcatcggccagtcccgagacaaagtgtgcttcgagaatctttcaagcaaaaagatttgcatctgggacttgaaaaaagaaaagatggaaaatgaagttgaatttgaatggagagtaccagccgctcatggatttgggcacaccagaactggacaactgaagatagtgaggttcttaatcccaacagttggtgcctcctccttctcgctggagatctgcaaagagaacgaaaagaagaagaaggagctcgtttgggccaagaaggaggtgaactctttggtcccatattatcccagtgacaaagattttgcaaaactggtctctaaagatagcatgcttttctggaaagggggtcttgtacacgaggtccagatcatcaagttcgacctggagaatgaggatttggggcttctggtacccccacaagatgaggatctaaaaccgacaaacatgtctcttggacatggcttccaaggcaggctctccctatgtgttcacactcatccctcgccacaagaaccgttctcagagctcaatgtttggactcttgagaagaaccaaggaggaggtgatggtgaattttggcacaagttgctcactcttccactggatcatactgcatatctccttgagccttatgttcctttgtcattctttcatggaagaggggattggggattgaaccttctgttccatagaaataaggcccagatttttcaaattgttgtgaggggtaatgatattgtaagtgaagcgatcgttcccacttttagctaccgtgaaaaatcactctccctgcctttcgtttgtagcacatttcaagccactcctctggctccaaaaacactcttcctgctggagccttcaaagccaataactgagaaggagaacaaggaggagaagaagaactgggatgccaccagactcagttttgcagatgaccttgaatag
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
No domains found.

Protein Analysis

401

Amino Acids

45.67

Weight (kDa)

8.55

Isoelectric Point (pI)

35.69

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AasI GACNNNNNNGTC 1 cut(s) 706
Acc65I GGTACC 1 cut(s) 670
AccB1I GGYRCC 3 cut(s) 109, 446, 670
AccB7I CCANNNNNTGG 1 cut(s) 443
AccBSI CCGCTC 1 cut(s) 380
AciI CCGC 2 cut(s) 124, 378
AclWI GGATC 3 cut(s) 152, 696, 873
AcoI YGGCCR 1 cut(s) 262
AcsI RAATTY 2 cut(s) 356, 833
AcuI CTGAAG 1 cut(s) 434
AfaI GTAC 3 cut(s) 372, 615, 672
AfiI CCNNNNNNNGG 1 cut(s) 443
AflIII ACRYGT 1 cut(s) 705
AjnI CCWGG 2 cut(s) 179, 642
AjuI GAANNNNNNNTTGG 4 cut(s) 641, 673, 910, 942
AluBI AGCT 4 cut(s) 58, 502, 787, 1029
AluI AGCT 4 cut(s) 58, 502, 787, 1029
Alw21I GWGCWC 3 cut(s) 258, 504, 789
Alw26I GTCTC 4 cut(s) 209, 267, 580, 714
AlwI GGATC 3 cut(s) 152, 696, 873
Ama87I CYCGRG 1 cut(s) 270
AoxI GGCC 3 cut(s) 262, 510, 960
ApoI RAATTY 2 cut(s) 356, 833
ArsI GACNNNNNNTTYG 2 cut(s) 545, 577
Asp718I GGTACC 1 cut(s) 670
AspS9I GGNCC 4 cut(s) 510, 535, 622, 961
AsuHPI GGTGA 6 cut(s) 146, 212, 225, 535, 836, 842
AvaI CYCGRG 1 cut(s) 270
AvaII GGWCC 2 cut(s) 535, 622
BaeGI GKGCMC 2 cut(s) 114, 396
BanI GGYRCC 3 cut(s) 109, 446, 670
BanII GRGCYC 2 cut(s) 504, 789
BauI CACGAG 1 cut(s) 617
BbsI GAAGAC 1 cut(s) 230
Bbv12I GWGCWC 3 cut(s) 258, 504, 789
BccI CCATC 5 cut(s) 135, 165, 197, 334, 821
BceAI ACGGC 1 cut(s) 71
BciT130I CCWGG 2 cut(s) 181, 644
BcoDI GTCTC 4 cut(s) 209, 267, 580, 714
BglII AGATCT 1 cut(s) 468
BisI GCNGC 1 cut(s) 378
BlsI GCNGC 1 cut(s) 379
Bme1390I CCNGG 2 cut(s) 181, 644
Bme18I GGWCC 2 cut(s) 535, 622
BmeT110I CYCGRG 1 cut(s) 270
BmgT120I GGNCC 4 cut(s) 510, 535, 622, 961
BmiI GGNNCC 6 cut(s) 111, 448, 537, 672, 1092, 1116
BmrFI CCNGG 2 cut(s) 181, 644
BmrI ACTGGG 2 cut(s) 543, 1174
BmsI GCATC 2 cut(s) 324, 1159
BmuI ACTGGG 2 cut(s) 543, 1174
BpiI GAAGAC 1 cut(s) 230
BplI GAGNNNNNCTC 2 cut(s) 512, 544
BpmI CTGGAG 3 cut(s) 485, 665, 1133
BpuEI CTTGAG 2 cut(s) 824, 905
BsaBI GATNNNNATC 2 cut(s) 314, 687
BsaI GGTCTC 2 cut(s) 209, 580
BsaJI CCNNGG 3 cut(s) 179, 727, 814
BsaWI WCCGGW 1 cut(s) 106
Bsc4I CCNNNNNNNGG 1 cut(s) 443
Bse1I ACTGG 6 cut(s) 265, 409, 549, 576, 867, 1169
Bse8I GATNNNNATC 2 cut(s) 314, 687
BseBI CCWGG 2 cut(s) 181, 644
BseDI CCNNGG 3 cut(s) 179, 727, 814
BseGI GGATG 2 cut(s) 757, 1174
BseJI GATNNNNATC 2 cut(s) 314, 687
BseLI CCNNNNNNNGG 1 cut(s) 443
BseMII CTCAG 3 cut(s) 795, 1125, 1195
BseNI ACTGG 6 cut(s) 265, 409, 549, 576, 867, 1169
BseRI GAGGAG 4 cut(s) 442, 834, 1074, 1166
BseSI GKGCMC 2 cut(s) 114, 396
Bsh1285I CGRYCG 2 cut(s) 124, 1014
BshFI GGCC 3 cut(s) 264, 512, 962
BshNI GGYRCC 3 cut(s) 109, 446, 670
BsiEI CGRYCG 2 cut(s) 124, 1014
BsiHKAI GWGCWC 3 cut(s) 258, 504, 789
BsiHKCI CYCGRG 1 cut(s) 270
BsiSI CCGG 2 cut(s) 107, 240
BslFI GGGAC 4 cut(s) 162, 253, 335, 521
BslI CCNNNNNNNGG 1 cut(s) 443
BsmAI GTCTC 4 cut(s) 209, 267, 580, 714
BsmFI GGGAC 4 cut(s) 162, 253, 335, 521
BsnI GGCC 3 cut(s) 264, 512, 962
Bso31I GGTCTC 2 cut(s) 209, 580
BsoBI CYCGRG 1 cut(s) 270
Bsp1286I GDGCHC 5 cut(s) 114, 258, 396, 504, 789
Bsp1407I TGTACA 1 cut(s) 613
Bsp143I GATC 7 cut(s) 144, 247, 468, 627, 688, 865, 1011
BspACI CCGC 2 cut(s) 124, 378
BspANI GGCC 3 cut(s) 264, 512, 962
BspCNI CTCAG 3 cut(s) 794, 1126, 1194
BspLI GGNNCC 6 cut(s) 111, 448, 537, 672, 1092, 1116
BspPI GGATC 3 cut(s) 152, 696, 873
BspT107I GGYRCC 3 cut(s) 109, 446, 670
BspTNI GGTCTC 2 cut(s) 209, 580
BsrBI CCGCTC 1 cut(s) 380
BsrGI TGTACA 1 cut(s) 613
BsrI ACTGG 6 cut(s) 265, 409, 549, 576, 867, 1169
BssECI CCNNGG 3 cut(s) 179, 727, 814
BssMI GATC 7 cut(s) 144, 247, 468, 627, 688, 865, 1011
BssSI CACGAG 1 cut(s) 617
BssT1I CCWWGG 2 cut(s) 727, 814
Bst2BI CACGAG 1 cut(s) 617
Bst2UI CCWGG 2 cut(s) 181, 644
Bst4CI ACNGT 4 cut(s) 237, 442, 777, 1034
Bst6I CTCTTC 4 cut(s) 37, 861, 913, 1109
BstAPI GCANNNNNTGC 1 cut(s) 847
BstAUI TGTACA 1 cut(s) 613
BstC8I GCNNGC 2 cut(s) 590, 734
BstDEI CTNAG 3 cut(s) 781, 1134, 1181
BstF5I GGATG 2 cut(s) 757, 1174
BstKTI GATC 7 cut(s) 147, 250, 471, 630, 691, 868, 1014
BstMAI GTCTC 4 cut(s) 209, 267, 580, 714
BstMBI GATC 7 cut(s) 144, 247, 468, 627, 688, 865, 1011
BstMCI CGRYCG 2 cut(s) 124, 1014
BstMWI GCNNNNNNNGC 4 cut(s) 21, 729, 847, 1123
BstNI CCWGG 2 cut(s) 181, 644
BstNSI RCATGY 2 cut(s) 592, 709
BstSCI CCNGG 2 cut(s) 179, 642
BstSLI GKGCMC 2 cut(s) 114, 396
BstV2I GAAGAC 1 cut(s) 230
BstX2I RGATCY 3 cut(s) 144, 468, 688
BstXI CCANNNNNNTGG 1 cut(s) 1087
BstYI RGATCY 3 cut(s) 144, 468, 688
BsuRI GGCC 3 cut(s) 264, 512, 962
BtgZI GCGATG 1 cut(s) 258
BtsCI GGATG 2 cut(s) 757, 1174
BtsIMutI CAGTG 2 cut(s) 556, 860
Cac8I GCNNGC 2 cut(s) 590, 734
Cfr13I GGNCC 4 cut(s) 510, 535, 622, 961
CseI GACGC 1 cut(s) 164
Csp6I GTAC 3 cut(s) 371, 614, 671
CviAII CATG 6 cut(s) 191, 383, 589, 706, 719, 914
CviQI GTAC 3 cut(s) 371, 614, 671
DdeI CTNAG 3 cut(s) 781, 1134, 1181
DpnI GATC 7 cut(s) 146, 249, 470, 629, 690, 867, 1013
DpnII GATC 7 cut(s) 144, 247, 468, 627, 688, 865, 1011
DrdI GACNNNNNNGTC 1 cut(s) 706
DseDI GACNNNNNNGTC 1 cut(s) 706
EaeI YGGCCR 1 cut(s) 262
Eam1104I CTCTTC 4 cut(s) 37, 861, 913, 1109
EarI CTCTTC 4 cut(s) 37, 861, 913, 1109
Ecl136II GAGCTC 2 cut(s) 502, 787
Eco130I CCWWGG 2 cut(s) 727, 814
Eco24I GRGCYC 2 cut(s) 504, 789
Eco31I GGTCTC 2 cut(s) 209, 580
Eco47I GGWCC 2 cut(s) 535, 622
Eco53kI GAGCTC 2 cut(s) 502, 787
Eco57I CTGAAG 1 cut(s) 434
Eco88I CYCGRG 1 cut(s) 270
EcoICRI GAGCTC 2 cut(s) 502, 787
EcoRII CCWGG 2 cut(s) 179, 642
EcoT14I CCWWGG 2 cut(s) 727, 814
EcoT38I GRGCYC 2 cut(s) 504, 789
ErhI CCWWGG 2 cut(s) 727, 814
FaeI CATG 6 cut(s) 194, 386, 592, 709, 722, 917
FalI AAGNNNNNCTT 2 cut(s) 594, 626
FaqI GGGAC 4 cut(s) 162, 253, 335, 521
FatI CATG 6 cut(s) 190, 382, 588, 705, 718, 913
Fnu4HI GCNGC 1 cut(s) 378
FokI GGATG 2 cut(s) 744, 1181
FriOI GRGCYC 2 cut(s) 504, 789
Fsp4HI GCNGC 1 cut(s) 378
GluI GCNGC 1 cut(s) 378
GsuI CTGGAG 3 cut(s) 485, 665, 1133
HaeIII GGCC 3 cut(s) 264, 512, 962
HapII CCGG 2 cut(s) 107, 240
HgaI GACGC 1 cut(s) 164
Hin1II CATG 6 cut(s) 194, 386, 592, 709, 722, 917
HindIII AAGCTT 1 cut(s) 56
HinfI GANTC 5 cut(s) 133, 184, 292, 799, 1179
HpaII CCGG 2 cut(s) 107, 240
HphI GGTGA 6 cut(s) 146, 212, 225, 535, 836, 842
Hpy166II GTNNAC 3 cut(s) 526, 616, 751
Hpy188I TCNGA 2 cut(s) 132, 784
Hpy188III TCNNGA 6 cut(s) 137, 270, 289, 598, 625, 803
Hpy8I GTNNAC 3 cut(s) 526, 616, 751
Hpy99I CGWCG 4 cut(s) 40, 43, 46, 86
HpyAV CCTTC 6 cut(s) 466, 490, 511, 950, 1128, 1132
HpyCH4III ACNGT 4 cut(s) 237, 442, 777, 1034
HpyCH4V TGCA 5 cut(s) 315, 474, 566, 875, 1190
HpyF10VI GCNNNNNNNGC 4 cut(s) 21, 729, 847, 1123
HpyF3I CTNAG 3 cut(s) 781, 1134, 1181
Hsp92II CATG 6 cut(s) 194, 386, 592, 709, 722, 917
KpnI GGTACC 1 cut(s) 674
Kzo9I GATC 7 cut(s) 144, 247, 468, 627, 688, 865, 1011
LmnI GCTCC 3 cut(s) 499, 1096, 1114
LweI GCATC 2 cut(s) 324, 1159
MaeIII GTNAC 2 cut(s) 193, 551
MalI GATC 7 cut(s) 146, 249, 470, 629, 690, 867, 1013
MbiI CCGCTC 1 cut(s) 380
MboI GATC 7 cut(s) 144, 247, 468, 627, 688, 865, 1011
MfeI CAATTG 1 cut(s) 209
MflI RGATCY 3 cut(s) 144, 468, 688
MhlI GDGCHC 5 cut(s) 114, 258, 396, 504, 789
MluCI AATT 4 cut(s) 209, 356, 833, 975
MlyI GAGTC 2 cut(s) 793, 1173
MseI TTAA 1 cut(s) 431
MspI CCGG 2 cut(s) 107, 240
MspR9I CCNGG 2 cut(s) 181, 644
MunI CAATTG 1 cut(s) 209
MvaI CCWGG 2 cut(s) 181, 644
MwoI GCNNNNNNNGC 4 cut(s) 21, 729, 847, 1123
NdeII GATC 7 cut(s) 144, 247, 468, 627, 688, 865, 1011
NlaIII CATG 6 cut(s) 194, 386, 592, 709, 722, 917
NlaIV GGNNCC 6 cut(s) 111, 448, 537, 672, 1092, 1116
NmuCI GTSAC 2 cut(s) 193, 551
NspI RCATGY 2 cut(s) 592, 709
PaeI GCATGC 1 cut(s) 592
PciI ACATGT 1 cut(s) 705
PcsI WCGNNNNNNNCGW 1 cut(s) 41
PfeI GAWTC 3 cut(s) 133, 184, 292
PflMI CCANNNNNTGG 1 cut(s) 443
PkrI GCNGC 1 cut(s) 379
Ple19I CGATCG 1 cut(s) 1014
PleI GAGTC 2 cut(s) 793, 1173
PpsI GAGTC 2 cut(s) 793, 1173
PscI ACATGT 1 cut(s) 705
Psp124BI GAGCTC 2 cut(s) 504, 789
Psp6I CCWGG 2 cut(s) 179, 642
PspGI CCWGG 2 cut(s) 179, 642
PspN4I GGNNCC 6 cut(s) 111, 448, 537, 672, 1092, 1116
PspPI GGNCC 4 cut(s) 510, 535, 622, 961
PsuI RGATCY 3 cut(s) 144, 468, 688
PvuI CGATCG 1 cut(s) 1014
RsaI GTAC 3 cut(s) 372, 615, 672
RsaNI GTAC 3 cut(s) 371, 614, 671
SacI GAGCTC 2 cut(s) 504, 789
SaqAI TTAA 1 cut(s) 431
SatI GCNGC 1 cut(s) 378
Sau3AI GATC 7 cut(s) 144, 247, 468, 627, 688, 865, 1011
Sau96I GGNCC 4 cut(s) 510, 535, 622, 961
SchI GAGTC 2 cut(s) 793, 1173
ScrFI CCNGG 2 cut(s) 181, 644
SduI GDGCHC 5 cut(s) 114, 258, 396, 504, 789
SfaNI GCATC 2 cut(s) 324, 1159
SinI GGWCC 2 cut(s) 535, 622
SmlI CTYRAG 2 cut(s) 803, 884
SmoI CTYRAG 2 cut(s) 803, 884
SphI GCATGC 1 cut(s) 592
Sse9I AATT 4 cut(s) 209, 356, 833, 975
SsiI CCGC 2 cut(s) 124, 378
SstI GAGCTC 2 cut(s) 504, 789
StyD4I CCNGG 2 cut(s) 179, 642
StyI CCWWGG 2 cut(s) 727, 814
TaaI ACNGT 4 cut(s) 237, 442, 777, 1034
TaqI TCGA 3 cut(s) 44, 288, 639
TasI AATT 4 cut(s) 209, 356, 833, 975
TatI WGTACW 1 cut(s) 613
TauI GCSGC 1 cut(s) 380
TfiI GAWTC 3 cut(s) 133, 184, 292
Tru1I TTAA 1 cut(s) 431
Tru9I TTAA 1 cut(s) 431
TscAI CASTG 2 cut(s) 556, 867
TseFI GTSAC 2 cut(s) 193, 551
Tsp45I GTSAC 2 cut(s) 193, 551
TspDTI ATGAA 4 cut(s) 17, 179, 363, 902
TspRI CASTG 2 cut(s) 556, 867
Van91I CCANNNNNTGG 1 cut(s) 443
VpaK11BI GGWCC 2 cut(s) 535, 622
XapI RAATTY 2 cut(s) 356, 833
XceI RCATGY 2 cut(s) 592, 709
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.