Basic Information

Type: gene

Biological Identity

Species

fragaria_vesca

Chromosome

Fvb6

Orthogroup ID

OG0001373

Physical Location & Seq

Genomic Coordinates Forward (+)

38689690 .. 38692575

Gene Structure 2886 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

FvH4_6g52650.t1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 756 bp

ATGATCATTGATGCTTCTTCTTCTAATCCATCCTTGAAAAGAAGGAGGCTCACCAACATTGATCCCATGGAGGCCGAAGAAGCCAAGGCCAAGCTCACAGCAGCAAAAGAAAAGTTTGGCAGAGAAATTCGTGTTTTTGAAACGGCACCACCTTCTTCTTCGCAAAATGTAGAGTCAAATACTGAGGAGACAGATGACCTTTATGAATTCACTGCTGAGGATTATTTTCGGATAATGAATACCAAGAAGGAAGAAAAGTTCCTGAAAACACGAAAGATTAGAGAGGCAGAACAGGCAGCTCGGAGGTCAAGGATAACAAAGGCTGTGATCAGGGTTCGCTTTCCTGATAACACAACATTAGAGGCCACTTTTCATCCATCTGAAACAATTCAGAGCTTGGTTGATCTCCTCAAGAGAGTGGTTGCTCGACCCGAATTATCATTCCACATATATACTACCCCTCCTAAGAAGCTGATAAAGGACATGACACAGGACTTCTACTCTGCTGGCTTTGCTCCTGGTGCAATTGTATACTTTTCATATGATATTCCAAAAGGTGATGATACTGCAGATGTCAAGTCAGGTCCTTTCCTTCATGAAGAGATAATGTCTTTGAAAGGCCTGGAACTTGTGAAAGAGCATGCAGAGCCAGTTCAGACTGCACCTGAACCTGTACAGGAGGCACCACCCCCTGTTGTCCAAGAGAAGAAGCCTGCTGAGAAAAAATCTGTTAAGCCAAAGTGGCTGAAAATGTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0005488 GO:0005515 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0005654 GO:0005886 GO:0008150 GO:0009893 GO:0009987 GO:0010604 GO:0016020 GO:0016043 GO:0019222 GO:0019899 GO:0022411 GO:0031323 GO:0031325 GO:0031399 GO:0031401 GO:0031974 GO:0031981 GO:0032268 GO:0032270 GO:0032501 GO:0032502 GO:0032984 GO:0035265 GO:0040007 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043233 GO:0043933 GO:0044422 GO:0044424 GO:0044428 GO:0044446 GO:0044464 GO:0048518 GO:0048522 GO:0048589 GO:0050789 GO:0050794 GO:0051117 GO:0051171 GO:0051173 GO:0051246 GO:0051247 GO:0060255 GO:0065007 GO:0070013 GO:0071840 GO:0071944 GO:0080090

KEGG Pathways

Metabolic & Signaling

ko05202 map05202

Pfam Domains

Protein Families

UBX

Protein Analysis

252

Amino Acids

28.55

Weight (kDa)

7.81

Isoelectric Point (pI)

55.49

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
UBX	PF00789	106 - 163	1.5e-06	UBX domain

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Publication-ready

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Orthologous Genes (Group: OG0001373)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT3G27310
fragaria_vesca	FvH4_2g09210 FvH4_3g43800 FvH4_6g52650 FvH4_6g52820 FvH4_6g52860
malus_domestica	MD09G1017300.v1.1 MD10G1138200.v1.1 MD17G1018100.v1.1
prunus_persica	Prupe.3G299600_v2.0.a1 Prupe.3G299600_v2.0.a1 Prupe.8G176800_v2.0.a1
pyrus_communis	pycom05g12990 pycom111g01420
rosa_chinensis	RchiOBHm_Chr2g0174181 RchiOBHm_Chr2g0174441 RchiOBHm_Chr6g0265061
rosa_laevigata	RLG00000014212 RLG00000022254 RLG00000022266 RLG00000022272
rosa_multiflora	Rmu_sc0000954.1_g000001 Rmu_sc0001533.1_g000005 Rmu_sc0003649.1_g000013 Rmu_sc0003649.1_g000018 Rmu_sc0003649.1_g000021 Rmu_ssc0000198.1_g000003 Rmu_ssc0000359.1_g000079
rosa_roxburghii	Rroxscaffold_175G00432130 Rroxscaffold_2G00078080 Rroxscaffold_2G00078110 Rroxscaffold_2G00078140 Rroxscaffold_2G00078190 Rroxscaffold_2G00078380
rosa_rugosa	Rorug02G0575700 Rorug02G0577500 Rorug06G0013300
rosa_samantha	Rh2AG655100 Rh2AG658300 Rh2AG658500 Rh2BG666300 Rh2BG669300 Rh2BG669500 Rh2CG630500 Rh2CG632400 Rh2CG632500 Rh2DG680900 Rh2DG683100 Rh2DG683200
rosa_wichuraiana	Rw2G053770 Rw2G053910 Rw2G053930 Rw6G011780

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccB1I	GGYRCC	2 cut(s)	145, 682
AccI	GTMKAC	1 cut(s)	531
AclWI	GGATC	1 cut(s)	56
AcsI	RAATTY	2 cut(s)	126, 206
AfaI	GTAC	1 cut(s)	675
AgsI	TTSAA	3 cut(s)	37, 140, 616
AjnI	CCWGG	2 cut(s)	517, 621
AloI	GAACNNNNNNTCC	2 cut(s)	242, 274
AluBI	AGCT	4 cut(s)	94, 299, 396, 472
AluI	AGCT	4 cut(s)	94, 299, 396, 472
Alw26I	GTCTC	1 cut(s)	182
AlwI	GGATC	1 cut(s)	56
AoxI	GGCC	4 cut(s)	72, 87, 363, 619
ApeKI	GCWGC	2 cut(s)	101, 296
ApoI	RAATTY	2 cut(s)	126, 206
Asp700I	GAANNNNTTC	1 cut(s)	387
AspS9I	GGNCC	1 cut(s)	584
AsuHPI	GGTGA	2 cut(s)	43, 569
AvaII	GGWCC	1 cut(s)	584
BanI	GGYRCC	2 cut(s)	145, 682
BbvCI	CCTCAGC	1 cut(s)	216
BbvI	GCAGC	2 cut(s)	113, 308
BccI	CCATC	2 cut(s)	37, 385
BceAI	ACGGC	1 cut(s)	159
BciT130I	CCWGG	2 cut(s)	519, 623
BclI	TGATCA	2 cut(s)	3, 327
BcoDI	GTCTC	1 cut(s)	182
BfmI	CTRYAG	1 cut(s)	567
BglI	GCCNNNNNGGC	1 cut(s)	742
BisI	GCNGC	2 cut(s)	102, 297
BlsI	GCNGC	2 cut(s)	103, 298
Bme1390I	CCNGG	2 cut(s)	519, 623
Bme18I	GGWCC	1 cut(s)	584
BmgT120I	GGNCC	1 cut(s)	584
BmiI	GGNNCC	2 cut(s)	147, 684
BmrFI	CCNGG	2 cut(s)	519, 623
Bpu10I	CCTNAGC	1 cut(s)	216
BpuEI	CTTGAG	1 cut(s)	395
BsaJI	CCNNGG	2 cut(s)	66, 84
BsaXI	ACNNNNNCTCC	2 cut(s)	445, 475
Bse1I	ACTGG	1 cut(s)	650
BseBI	CCWGG	2 cut(s)	519, 623
BseDI	CCNNGG	2 cut(s)	66, 84
BseGI	GGATG	2 cut(s)	29, 373
BseMII	CTCAG	3 cut(s)	174, 207, 708
BseNI	ACTGG	1 cut(s)	650
BseRI	GAGGAG	2 cut(s)	200, 398
BseXI	GCAGC	2 cut(s)	113, 308
BsgI	GTGCAG	1 cut(s)	645
BshFI	GGCC	4 cut(s)	74, 89, 365, 621
BshNI	GGYRCC	2 cut(s)	145, 682
BsmAI	GTCTC	1 cut(s)	182
BsnI	GGCC	4 cut(s)	74, 89, 365, 621
Bsp1407I	TGTACA	1 cut(s)	673
Bsp143I	GATC	4 cut(s)	3, 61, 327, 403
Bsp19I	CCATGG	1 cut(s)	66
BspANI	GGCC	4 cut(s)	74, 89, 365, 621
BspCNI	CTCAG	3 cut(s)	175, 208, 709
BspHI	TCATGA	1 cut(s)	595
BspLI	GGNNCC	2 cut(s)	147, 684
BspMAI	CTGCAG	1 cut(s)	571
BspPI	GGATC	1 cut(s)	56
BspT107I	GGYRCC	2 cut(s)	145, 682
BsrGI	TGTACA	1 cut(s)	673
BsrI	ACTGG	1 cut(s)	650
BssECI	CCNNGG	2 cut(s)	66, 84
BssMI	GATC	4 cut(s)	3, 61, 327, 403
BssNAI	GTATAC	1 cut(s)	532
BssT1I	CCWWGG	2 cut(s)	66, 84
Bst1107I	GTATAC	1 cut(s)	532
Bst2UI	CCWGG	2 cut(s)	519, 623
Bst6I	CTCTTC	1 cut(s)	594
BstAUI	TGTACA	1 cut(s)	673
BstC8I	GCNNGC	3 cut(s)	508, 642, 714
BstDEI	CTNAG	4 cut(s)	183, 216, 465, 717
BstDSI	CCRYGG	1 cut(s)	66
BstF5I	GGATG	2 cut(s)	29, 373
BstKTI	GATC	4 cut(s)	6, 64, 330, 406
BstMAI	GTCTC	1 cut(s)	182
BstMBI	GATC	4 cut(s)	3, 61, 327, 403
BstMWI	GCNNNNNNNGC	6 cut(s)	80, 293, 512, 521, 646, 742
BstNI	CCWGG	2 cut(s)	519, 623
BstNSI	RCATGY	1 cut(s)	644
BstSCI	CCNGG	2 cut(s)	517, 621
BstSFI	CTRYAG	1 cut(s)	567
BstV1I	GCAGC	2 cut(s)	113, 308
BstZ17I	GTATAC	1 cut(s)	532
BsuRI	GGCC	4 cut(s)	74, 89, 365, 621
BtgI	CCRYGG	1 cut(s)	66
BtsCI	GGATG	2 cut(s)	29, 373
BtsI	GCAGTG	1 cut(s)	210
BtsIMutI	CAGTG	1 cut(s)	210
Cac8I	GCNNGC	3 cut(s)	508, 642, 714
CciI	TCATGA	1 cut(s)	595
Cfr13I	GGNCC	1 cut(s)	584
Csp6I	GTAC	1 cut(s)	674
CviAII	CATG	4 cut(s)	67, 484, 596, 641
CviQI	GTAC	1 cut(s)	674
DdeI	CTNAG	4 cut(s)	183, 216, 465, 717
DpnI	GATC	4 cut(s)	5, 63, 329, 405
DpnII	GATC	4 cut(s)	3, 61, 327, 403
Eam1104I	CTCTTC	1 cut(s)	594
EarI	CTCTTC	1 cut(s)	594
Eco130I	CCWWGG	2 cut(s)	66, 84
Eco147I	AGGCCT	1 cut(s)	621
Eco47I	GGWCC	1 cut(s)	584
EcoO109I	RGGNCCY	1 cut(s)	584
EcoRI	GAATTC	1 cut(s)	206
EcoRII	CCWGG	2 cut(s)	517, 621
EcoT14I	CCWWGG	2 cut(s)	66, 84
ErhI	CCWWGG	2 cut(s)	66, 84
FaeI	CATG	4 cut(s)	70, 487, 599, 644
FatI	CATG	4 cut(s)	66, 483, 595, 640
FauNDI	CATATG	1 cut(s)	541
FbaI	TGATCA	2 cut(s)	3, 327
FblI	GTMKAC	1 cut(s)	531
Fnu4HI	GCNGC	2 cut(s)	102, 297
FokI	GGATG	2 cut(s)	16, 360
Fsp4HI	GCNGC	2 cut(s)	102, 297
GluI	GCNGC	2 cut(s)	102, 297
HaeIII	GGCC	4 cut(s)	74, 89, 365, 621
Hin1II	CATG	4 cut(s)	70, 487, 599, 644
HinfI	GANTC	1 cut(s)	173
HphI	GGTGA	2 cut(s)	43, 569
Hpy166II	GTNNAC	1 cut(s)	532
Hpy188I	TCNGA	5 cut(s)	231, 303, 382, 393, 657
Hpy188III	TCNNGA	4 cut(s)	262, 344, 412, 596
Hpy8I	GTNNAC	1 cut(s)	532
HpyAV	CCTTC	4 cut(s)	36, 162, 241, 602
HpyCH4V	TGCA	4 cut(s)	524, 569, 644, 662
HpyF10VI	GCNNNNNNNGC	6 cut(s)	80, 293, 512, 521, 646, 742
HpyF3I	CTNAG	4 cut(s)	183, 216, 465, 717
Hsp92II	CATG	4 cut(s)	70, 487, 599, 644
Ksp22I	TGATCA	2 cut(s)	3, 327
Kzo9I	GATC	4 cut(s)	3, 61, 327, 403
LmnI	GCTCC	1 cut(s)	520
Lsp1109I	GCAGC	2 cut(s)	113, 308
MalI	GATC	4 cut(s)	5, 63, 329, 405
MboI	GATC	4 cut(s)	3, 61, 327, 403
MboII	GAAGA	8 cut(s)	9, 12, 89, 147, 150, 263, 611, 718
MfeI	CAATTG	1 cut(s)	525
MluCI	AATT	5 cut(s)	126, 206, 387, 434, 525
MlyI	GAGTC	1 cut(s)	182
MroXI	GAANNNNTTC	1 cut(s)	387
MseI	TTAA	1 cut(s)	732
MspR9I	CCNGG	2 cut(s)	519, 623
MunI	CAATTG	1 cut(s)	525
MvaI	CCWGG	2 cut(s)	519, 623
MwoI	GCNNNNNNNGC	6 cut(s)	80, 293, 512, 521, 646, 742
NcoI	CCATGG	1 cut(s)	66
NdeI	CATATG	1 cut(s)	541
NdeII	GATC	4 cut(s)	3, 61, 327, 403
NlaIII	CATG	4 cut(s)	70, 487, 599, 644
NlaIV	GGNNCC	2 cut(s)	147, 684
NspI	RCATGY	1 cut(s)	644
PaeI	GCATGC	1 cut(s)	644
PagI	TCATGA	1 cut(s)	595
PceI	AGGCCT	1 cut(s)	621
PdmI	GAANNNNTTC	1 cut(s)	387
PkrI	GCNGC	2 cut(s)	103, 298
PleI	GAGTC	1 cut(s)	181
PpsI	GAGTC	1 cut(s)	181
PpuMI	RGGWCCY	1 cut(s)	584
Psp5II	RGGWCCY	1 cut(s)	584
Psp6I	CCWGG	2 cut(s)	517, 621
PspGI	CCWGG	2 cut(s)	517, 621
PspN4I	GGNNCC	2 cut(s)	147, 684
PspPI	GGNCC	1 cut(s)	584
PspPPI	RGGWCCY	1 cut(s)	584
PstI	CTGCAG	1 cut(s)	571
RsaI	GTAC	1 cut(s)	675
RsaNI	GTAC	1 cut(s)	674
SaqAI	TTAA	1 cut(s)	732
SatI	GCNGC	2 cut(s)	102, 297
Sau3AI	GATC	4 cut(s)	3, 61, 327, 403
Sau96I	GGNCC	1 cut(s)	584
SchI	GAGTC	1 cut(s)	182
ScrFI	CCNGG	2 cut(s)	519, 623
SfcI	CTRYAG	1 cut(s)	567
SinI	GGWCC	1 cut(s)	584
SmlI	CTYRAG	1 cut(s)	410
SmoI	CTYRAG	1 cut(s)	410
SphI	GCATGC	1 cut(s)	644
Sse9I	AATT	5 cut(s)	126, 206, 387, 434, 525
SseBI	AGGCCT	1 cut(s)	621
StuI	AGGCCT	1 cut(s)	621
StyD4I	CCNGG	2 cut(s)	517, 621
StyI	CCWWGG	2 cut(s)	66, 84
TaqI	TCGA	1 cut(s)	427
TasI	AATT	5 cut(s)	126, 206, 387, 434, 525
TatI	WGTACW	1 cut(s)	673
Tru1I	TTAA	1 cut(s)	732
Tru9I	TTAA	1 cut(s)	732
TscAI	CASTG	1 cut(s)	217
TseI	GCWGC	2 cut(s)	101, 296
TspDTI	ATGAA	6 cut(s)	219, 251, 362, 528, 584, 612
TspRI	CASTG	1 cut(s)	217
VpaK11BI	GGWCC	1 cut(s)	584
XapI	RAATTY	2 cut(s)	126, 206
XceI	RCATGY	1 cut(s)	644
XmiI	GTMKAC	1 cut(s)	531
XmnI	GAANNNNTTC	1 cut(s)	387

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.