Rroxscaffold_2G00078190

No description available

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_roxburghii
GWHEROQ00000002
OG0001373
Physical Location & Seq
Forward (+)
1580030 .. 1581160
1131 bp
Loading structure...
UTR
Exon/CDS
Intron
Rroxscaffold_2G00078190.1

Sequence Viewer

Length: 1131 bp
ATGGAACACCGAGCGCCGAATCTCCCACCACCCAAGTCTCCTGGCGGCTCATCATCTTCTGAAGAAGGACCCTGGACCATTCTCAATCACATTCCTCCGGGTCCAGGAGAAGACCGTATGGTTCGCCAAGAAAGAGTCTTTCTTTTTCAGGGAAATCCAAGAACCGAACCCAGAGTGTTGCATCTGTTCTCCGATGGGAGTTTCAGTCTTCAGAATAAGGCTCGTCCCTCTGCATTAGACCAACTTGAATTGGTTGGGCATTCTAGAGGACAAGTCTGTTTTCGAAATCTAAGCCAGAGACAGATCTTGGTTTGGGATTTGGAAGCTCAAAGAGTAAGGAAAGTGCTTGATGATGTGACCGAGGGAGGAGAATCGTCCTATGGATTCGGGCACAGAAACGGGGGCTTATTCATGGTGGTTAGACTTGGACGCCAACCTCTATTTCACAACATGCAGGATTACGGATACTACCTCCATACCTTTATCGAGAGAGAAAGAGAACAGTGGACCAGAGTTGAGTTTAGGTTGGAGGCTCTGTATGATTTTAGAACCTTTGGACCTGCGATATTGGTCTCTCAGAATGGCATGCTTTACTGGAAAGCGGTGAGTGTAGATGATCCTGGAGATGATCTTGATAATGTGGAGTTAGTGCTGGGCCATGGGTTCAAAGGTCAACTGGCTGCGTCAGTATATGTACCTCCTGAAAATCAAGAAGGACATTCTTATTTGCACATTTGGGTCCTCCTGAAAGAACTTGCCATGTATCATTGGCACAAGCTAGTGGCTTTGCCTTGCCATGATTATACTAGTGATGGTGAAGTGTTTGTGCCCCTAGTATTTTACTATGACAGAGAAGGTGGTGCAATCAACCTTCTCGTGCACAGGAACAAGGAGGAAGTCGTGCATATGATACCAGCCAAGAAGCGGGTTAATCCATTAGCTGATGCTGAGTTCAGGAGAGTTCCTGTACCCTCAGCCATACCTTCAGGCATGAAAATGCAGCTTGGATCCCGTAGGATGTTTCAAGCAACTCCACTTGTGAAGCCTATGGGAAACAGGGCACTTGCAGAGGACAATAACACAGATGATGATGATGATGATGATGAAGGTATTGCTTTCGCTCTTGACTAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
No domains found.

Protein Analysis

376

Amino Acids

42.73

Weight (kDa)

5.68

Isoelectric Point (pI)

44.5

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
Acc36I ACCTGC 1 cut(s) 568
AciI CCGC 3 cut(s) 45, 602, 925
AclWI GGATC 3 cut(s) 611, 1002, 1015
AcuI CTGAAG 3 cut(s) 81, 194, 969
AcyI GRCGYC 1 cut(s) 430
AfaI GTAC 2 cut(s) 696, 969
AfiI CCNNNNNNNGG 2 cut(s) 104, 924
AgsI TTSAA 3 cut(s) 248, 667, 1025
AhlI ACTAGT 1 cut(s) 806
AjnI CCWGG 4 cut(s) 40, 71, 103, 619
AjuI GAANNNNNNNTTGG 2 cut(s) 426, 458
AluBI AGCT 4 cut(s) 326, 778, 941, 1003
AluI AGCT 4 cut(s) 326, 778, 941, 1003
Alw21I GWGCWC 1 cut(s) 882
Alw26I GTCTC 3 cut(s) 42, 292, 577
Alw44I GTGCAC 1 cut(s) 878
AlwI GGATC 3 cut(s) 611, 1002, 1015
AoxI GGCC 1 cut(s) 655
ApaLI GTGCAC 1 cut(s) 878
ApeKI GCWGC 2 cut(s) 680, 1000
AspLEI GCGC 1 cut(s) 16
AspS9I GGNCC 7 cut(s) 68, 75, 101, 507, 557, 655, 739
AsuC2I CCSGG 1 cut(s) 99
AsuHPI GGTGA 2 cut(s) 616, 827
AsuII TTCGAA 1 cut(s) 283
AvaII GGWCC 6 cut(s) 68, 75, 101, 507, 557, 739
BaeGI GKGCMC 4 cut(s) 393, 831, 882, 1063
BamHI GGATCC 1 cut(s) 1007
BauI CACGAG 1 cut(s) 875
BbsI GAAGAC 2 cut(s) 117, 200
Bbv12I GWGCWC 1 cut(s) 882
BbvCI CCTCAGC 1 cut(s) 973
BbvI GCAGC 2 cut(s) 667, 1012
BccI CCATC 2 cut(s) 188, 806
BciT130I CCWGG 4 cut(s) 42, 73, 105, 621
BciVI GTATCC 1 cut(s) 458
BcnI CCSGG 1 cut(s) 99
BcoDI GTCTC 3 cut(s) 42, 292, 577
BcuI ACTAGT 1 cut(s) 806
BfaI CTAG 4 cut(s) 264, 779, 807, 833
BfoI RGCGCY 1 cut(s) 17
BfuAI ACCTGC 1 cut(s) 568
BfuI GTATCC 1 cut(s) 458
BglII AGATCT 1 cut(s) 303
BisI GCNGC 3 cut(s) 46, 681, 1001
BlsI GCNGC 3 cut(s) 47, 682, 1002
Bme1390I CCNGG 5 cut(s) 42, 73, 99, 105, 621
Bme18I GGWCC 6 cut(s) 68, 75, 101, 507, 557, 739
BmgT120I GGNCC 7 cut(s) 68, 75, 101, 507, 557, 655, 739
BmiI GGNNCC 4 cut(s) 70, 102, 740, 1009
BmrFI CCNGG 5 cut(s) 42, 73, 99, 105, 621
BmsI GCATC 2 cut(s) 190, 934
BpiI GAAGAC 2 cut(s) 117, 200
BpmI CTGGAG 1 cut(s) 642
Bpu10I CCTNAGC 1 cut(s) 973
Bpu14I TTCGAA 1 cut(s) 283
BpuMI CCSGG 1 cut(s) 99
BsaHI GRCGYC 1 cut(s) 430
BsaI GGTCTC 1 cut(s) 577
BsaJI CCNNGG 3 cut(s) 71, 360, 658
BsaXI ACNNNNNCTCC 4 cut(s) 190, 220, 521, 551
Bsc4I CCNNNNNNNGG 2 cut(s) 104, 924
Bse1I ACTGG 2 cut(s) 599, 681
BseBI CCWGG 4 cut(s) 42, 73, 105, 621
BseDI CCNNGG 3 cut(s) 71, 360, 658
BseGI GGATG 1 cut(s) 1023
BseLI CCNNNNNNNGG 2 cut(s) 104, 924
BseMII CTCAG 3 cut(s) 590, 939, 987
BseNI ACTGG 2 cut(s) 599, 681
BseRI GAGGAG 1 cut(s) 381
BseSI GKGCMC 4 cut(s) 393, 831, 882, 1063
BseXI GCAGC 2 cut(s) 667, 1012
BseYI CCCAGC 1 cut(s) 652
BshFI GGCC 1 cut(s) 657
BsiHKAI GWGCWC 1 cut(s) 882
BsiSI CCGG 1 cut(s) 98
BslFI GGGAC 1 cut(s) 210
BslI CCNNNNNNNGG 2 cut(s) 104, 924
BsmAI GTCTC 3 cut(s) 42, 292, 577
BsmFI GGGAC 1 cut(s) 210
BsmI GAATGC 1 cut(s) 259
BsnI GGCC 1 cut(s) 657
Bso31I GGTCTC 1 cut(s) 577
Bsp119I TTCGAA 1 cut(s) 283
Bsp1286I GDGCHC 4 cut(s) 393, 831, 882, 1063
Bsp143I GATC 4 cut(s) 303, 616, 628, 1007
Bsp19I CCATGG 1 cut(s) 658
BspACI CCGC 3 cut(s) 45, 602, 925
BspANI GGCC 1 cut(s) 657
BspCNI CTCAG 3 cut(s) 589, 940, 986
BspLI GGNNCC 4 cut(s) 70, 102, 740, 1009
BspMI ACCTGC 1 cut(s) 568
BspPI GGATC 3 cut(s) 611, 1002, 1015
BspT104I TTCGAA 1 cut(s) 283
BspTNI GGTCTC 1 cut(s) 577
BsrI ACTGG 2 cut(s) 599, 681
BssECI CCNNGG 3 cut(s) 71, 360, 658
BssMI GATC 4 cut(s) 303, 616, 628, 1007
BssNI GRCGYC 1 cut(s) 430
BssSI CACGAG 1 cut(s) 875
BssT1I CCWWGG 1 cut(s) 658
Bst2BI CACGAG 1 cut(s) 875
Bst2UI CCWGG 4 cut(s) 42, 73, 105, 621
Bst4CI ACNGT 2 cut(s) 116, 504
BstACI GRCGYC 1 cut(s) 430
BstBI TTCGAA 1 cut(s) 283
BstC8I GCNNGC 1 cut(s) 587
BstDEI CTNAG 4 cut(s) 290, 576, 948, 973
BstDSI CCRYGG 1 cut(s) 658
BstF5I GGATG 1 cut(s) 1023
BstH2I RGCGCY 1 cut(s) 17
BstHHI GCGC 1 cut(s) 16
BstKTI GATC 4 cut(s) 306, 619, 631, 1010
BstMAI GTCTC 3 cut(s) 42, 292, 577
BstMBI GATC 4 cut(s) 303, 616, 628, 1007
BstNI CCWGG 4 cut(s) 42, 73, 105, 621
BstNSI RCATGY 2 cut(s) 454, 589
BstSCI CCNGG 5 cut(s) 40, 71, 97, 103, 619
BstSLI GKGCMC 4 cut(s) 393, 831, 882, 1063
BstV1I GCAGC 2 cut(s) 667, 1012
BstV2I GAAGAC 2 cut(s) 117, 200
BstX2I RGATCY 2 cut(s) 303, 1007
BstYI RGATCY 2 cut(s) 303, 1007
BsuI GTATCC 1 cut(s) 458
BsuRI GGCC 1 cut(s) 657
BtgI CCRYGG 1 cut(s) 658
BtsCI GGATG 1 cut(s) 1023
BtsIMutI CAGTG 1 cut(s) 509
BveI ACCTGC 1 cut(s) 568
Cac8I GCNNGC 1 cut(s) 587
CfoI GCGC 1 cut(s) 16
Cfr13I GGNCC 7 cut(s) 68, 75, 101, 507, 557, 655, 739
CseI GACGC 2 cut(s) 438, 672
Csp6I GTAC 2 cut(s) 695, 968
CviAII CATG 7 cut(s) 412, 451, 586, 659, 760, 797, 991
CviQI GTAC 2 cut(s) 695, 968
DdeI CTNAG 4 cut(s) 290, 576, 948, 973
DpnI GATC 4 cut(s) 305, 618, 630, 1009
DpnII GATC 4 cut(s) 303, 616, 628, 1007
Eco130I CCWWGG 1 cut(s) 658
Eco31I GGTCTC 1 cut(s) 577
Eco47I GGWCC 6 cut(s) 68, 75, 101, 507, 557, 739
Eco57I CTGAAG 3 cut(s) 81, 194, 969
EcoO109I RGGNCCY 2 cut(s) 68, 739
EcoRII CCWGG 4 cut(s) 40, 71, 103, 619
EcoT14I CCWWGG 1 cut(s) 658
ErhI CCWWGG 1 cut(s) 658
FaeI CATG 7 cut(s) 415, 454, 589, 662, 763, 800, 994
FaqI GGGAC 1 cut(s) 210
FatI CATG 7 cut(s) 411, 450, 585, 658, 759, 796, 990
FauI CCCGC 1 cut(s) 918
FauNDI CATATG 1 cut(s) 906
Fnu4HI GCNGC 3 cut(s) 46, 681, 1001
FokI GGATG 1 cut(s) 1030
Fsp4HI GCNGC 3 cut(s) 46, 681, 1001
FspBI CTAG 4 cut(s) 264, 779, 807, 833
GlaI GCGC 1 cut(s) 15
GluI GCNGC 3 cut(s) 46, 681, 1001
GsaI CCCAGC 1 cut(s) 656
GsuI CTGGAG 1 cut(s) 642
HaeII RGCGCY 1 cut(s) 17
HaeIII GGCC 1 cut(s) 657
HapII CCGG 1 cut(s) 98
HgaI GACGC 2 cut(s) 438, 672
HhaI GCGC 1 cut(s) 16
Hin1I GRCGYC 1 cut(s) 430
Hin1II CATG 7 cut(s) 415, 454, 589, 662, 763, 800, 994
Hin6I GCGC 1 cut(s) 14
HinP1I GCGC 1 cut(s) 14
HincII GTYRAC 1 cut(s) 674
HindII GTYRAC 1 cut(s) 674
HinfI GANTC 4 cut(s) 19, 135, 371, 384
HpaII CCGG 1 cut(s) 98
HphI GGTGA 2 cut(s) 616, 827
Hpy166II GTNNAC 3 cut(s) 507, 674, 880
Hpy188I TCNGA 4 cut(s) 61, 193, 213, 579
Hpy188III TCNNGA 8 cut(s) 264, 487, 632, 701, 710, 745, 955, 1124
Hpy8I GTNNAC 3 cut(s) 507, 674, 880
HpyAV CCTTC 6 cut(s) 59, 707, 848, 881, 993, 1100
HpyCH4III ACNGT 2 cut(s) 116, 504
HpyCH4V TGCA 9 cut(s) 181, 233, 454, 730, 863, 880, 904, 1000, 1067
HpyF3I CTNAG 4 cut(s) 290, 576, 948, 973
Hsp92I GRCGYC 1 cut(s) 430
Hsp92II CATG 7 cut(s) 415, 454, 589, 662, 763, 800, 994
HspAI GCGC 1 cut(s) 14
Kzo9I GATC 4 cut(s) 303, 616, 628, 1007
Lsp1109I GCAGC 2 cut(s) 667, 1012
LweI GCATC 2 cut(s) 190, 934
MaeI CTAG 4 cut(s) 264, 779, 807, 833
MaeIII GTNAC 1 cut(s) 355
MalI GATC 4 cut(s) 305, 618, 630, 1009
MboI GATC 4 cut(s) 303, 616, 628, 1007
MboII GAAGA 4 cut(s) 48, 74, 122, 200
MflI RGATCY 2 cut(s) 303, 1007
MhlI GDGCHC 4 cut(s) 393, 831, 882, 1063
MluCI AATT 1 cut(s) 248
MlyI GAGTC 1 cut(s) 144
MmeI TCCRAC 1 cut(s) 507
MseI TTAA 1 cut(s) 930
MslI CAYNNNNRTG 1 cut(s) 995
MspI CCGG 1 cut(s) 98
MspR9I CCNGG 5 cut(s) 42, 73, 99, 105, 621
Mva1269I GAATGC 1 cut(s) 259
MvaI CCWGG 4 cut(s) 42, 73, 105, 621
NciI CCSGG 1 cut(s) 99
NcoI CCATGG 1 cut(s) 658
NdeI CATATG 1 cut(s) 906
NdeII GATC 4 cut(s) 303, 616, 628, 1007
NlaIII CATG 7 cut(s) 415, 454, 589, 662, 763, 800, 994
NlaIV GGNNCC 4 cut(s) 70, 102, 740, 1009
NmuCI GTSAC 1 cut(s) 355
NspI RCATGY 2 cut(s) 454, 589
NspV TTCGAA 1 cut(s) 283
PaeI GCATGC 1 cut(s) 589
PctI GAATGC 1 cut(s) 259
PfeI GAWTC 3 cut(s) 19, 371, 384
PfoI TCCNGGA 2 cut(s) 103, 619
PkrI GCNGC 3 cut(s) 47, 682, 1002
PleI GAGTC 1 cut(s) 143
PpsI GAGTC 1 cut(s) 143
PpuMI RGGWCCY 2 cut(s) 68, 739
Psp5II RGGWCCY 2 cut(s) 68, 739
Psp6I CCWGG 4 cut(s) 40, 71, 103, 619
PspFI CCCAGC 1 cut(s) 652
PspGI CCWGG 4 cut(s) 40, 71, 103, 619
PspN4I GGNNCC 4 cut(s) 70, 102, 740, 1009
PspPI GGNCC 7 cut(s) 68, 75, 101, 507, 557, 655, 739
PspPPI RGGWCCY 2 cut(s) 68, 739
PsuI RGATCY 2 cut(s) 303, 1007
RsaI GTAC 2 cut(s) 696, 969
RsaNI GTAC 2 cut(s) 695, 968
RseI CAYNNNNRTG 1 cut(s) 995
SaqAI TTAA 1 cut(s) 930
SatI GCNGC 3 cut(s) 46, 681, 1001
Sau3AI GATC 4 cut(s) 303, 616, 628, 1007
Sau96I GGNCC 7 cut(s) 68, 75, 101, 507, 557, 655, 739
SchI GAGTC 1 cut(s) 144
ScrFI CCNGG 5 cut(s) 42, 73, 99, 105, 621
SduI GDGCHC 4 cut(s) 393, 831, 882, 1063
SfaNI GCATC 2 cut(s) 190, 934
SfuI TTCGAA 1 cut(s) 283
SinI GGWCC 6 cut(s) 68, 75, 101, 507, 557, 739
SmiMI CAYNNNNRTG 1 cut(s) 995
SpeI ACTAGT 1 cut(s) 806
SphI GCATGC 1 cut(s) 589
Sse9I AATT 1 cut(s) 248
SsiI CCGC 3 cut(s) 45, 602, 925
SspMI CTAG 4 cut(s) 264, 779, 807, 833
StyD4I CCNGG 5 cut(s) 40, 71, 97, 103, 619
StyI CCWWGG 1 cut(s) 658
TaaI ACNGT 2 cut(s) 116, 504
TaqI TCGA 2 cut(s) 283, 486
TaqII GACCGA 1 cut(s) 374
TasI AATT 1 cut(s) 248
TauI GCSGC 1 cut(s) 48
TfiI GAWTC 3 cut(s) 19, 371, 384
Tru1I TTAA 1 cut(s) 930
Tru9I TTAA 1 cut(s) 930
TscAI CASTG 1 cut(s) 509
TseFI GTSAC 1 cut(s) 355
TseI GCWGC 2 cut(s) 680, 1000
Tsp45I GTSAC 1 cut(s) 355
TspDTI ATGAA 3 cut(s) 400, 1007, 1119
TspGWI ACGGA 1 cut(s) 477
TspRI CASTG 1 cut(s) 509
VneI GTGCAC 1 cut(s) 878
VpaK11BI GGWCC 6 cut(s) 68, 75, 101, 507, 557, 739
XbaI TCTAGA 1 cut(s) 263
XceI RCATGY 2 cut(s) 454, 589
XspI CTAG 4 cut(s) 264, 779, 807, 833
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.