Basic Information

Type: gene

Biological Identity

Species

rosa_samantha

Chromosome

Chr2D

Orthogroup ID

OG0001373

Physical Location & Seq

Genomic Coordinates Reverse (-)

90231988 .. 90233832

Gene Structure 1845 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

Rh2DG683200.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 903 bp

ATGAAAGGCAGAGGAGAATCCTCTTCATCGGCCTCCGATTGTTCCAAGACGAATCTCCCACCACTCGTCTCTCTCCCCAAAGGCGAGCCTCTAGAAGAAGCCAAGGCTGTGATCAGGGTTCGCTTTCCTGATAATACAACATTAGAGGCCACTTTCCATCCATCAGAAACACTTCAGAGCCTGGTTGATCTCCTCATGAAAGTGGTTGCTCGACCAGAATTATCGTTCCAGATATATACTACTCCTCCTAAGAAGCTGATAAAAGACATGACACAGGACTTCTACTCTGCTGGCTTCGCTCCTGGTGCAATTATATATTTTTCATATGATATTCCAAAAGGTGATGATACTGCAGATGTCAAGTCAGGTCCTTTCCTTCACGAAGAGATCATGTCTTTGAATGGTCTGGAACTTGTGAAAGAGCTTGCAGAGCCTGTTCAGACTGCACCGGAGGCTATACAGCAGGCATCACCCCCTGTTGTCCAAGAGAAGAAGCCCGCCAAGAAAAACCTTGTCTATCTCCCTAAAGGCGAACCCGTAGGAGAATCCTCTTCTTCCAGCTCCAATCGTTCCAAGACGAATCTCTCACCACTCGTCTTTCTCCCTACAGGCATACCTCTAGAAGCACCACGGACCATTCTCAATCACCTTCCTGCGCCTCCAGCGGAAGACCGTATGGTCAGGAGAGAAAAAGTTTTTCTTTTTCAAGGATATCCAAGAGTGGAACCCAAGGTGTTGCATGTGTTTTCAGATGGGAGTTACAGTCTTGAGACAACAGCCCCTCCCTCTGCATCATACGTACTTGAACTCATTGGCTATTCCAAAGGCCTAGTCTGTTTCAGAAATCCAGACTTGAGACAGATTCACAGATATGCATTTGGGATTTGGAAGAGCAAACAGTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0005488 GO:0005515 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0005654 GO:0005886 GO:0008150 GO:0009893 GO:0009987 GO:0010604 GO:0016020 GO:0016043 GO:0019222 GO:0019899 GO:0022411 GO:0031323 GO:0031325 GO:0031399 GO:0031401 GO:0031974 GO:0031981 GO:0032268 GO:0032270 GO:0032501 GO:0032502 GO:0032984 GO:0035265 GO:0040007 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043233 GO:0043933 GO:0044422 GO:0044424 GO:0044428 GO:0044446 GO:0044464 GO:0048518 GO:0048522 GO:0048589 GO:0050789 GO:0050794 GO:0051117 GO:0051171 GO:0051173 GO:0051246 GO:0051247 GO:0060255 GO:0065007 GO:0070013 GO:0071840 GO:0071944 GO:0080090

KEGG Pathways

Metabolic & Signaling

ko05202 map05202

Pfam Domains

Protein Families

UBX

Protein Analysis

300

Amino Acids

33.1

Weight (kDa)

7.72

Isoelectric Point (pI)

47.54

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
UBX	PF00789	33 - 91	1.4e-06	UBX domain

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

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Genomic Context

Gene Family Tree

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Publication-ready

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Orthologous Genes (Group: OG0001373)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT3G27310
fragaria_vesca	FvH4_2g09210 FvH4_3g43800 FvH4_6g52650 FvH4_6g52820 FvH4_6g52860
malus_domestica	MD09G1017300.v1.1 MD10G1138200.v1.1 MD17G1018100.v1.1
prunus_persica	Prupe.3G299600_v2.0.a1 Prupe.3G299600_v2.0.a1 Prupe.8G176800_v2.0.a1
pyrus_communis	pycom05g12990 pycom111g01420
rosa_chinensis	RchiOBHm_Chr2g0174181 RchiOBHm_Chr2g0174441 RchiOBHm_Chr6g0265061
rosa_laevigata	RLG00000014212 RLG00000022254 RLG00000022266 RLG00000022272
rosa_multiflora	Rmu_sc0000954.1_g000001 Rmu_sc0001533.1_g000005 Rmu_sc0003649.1_g000013 Rmu_sc0003649.1_g000018 Rmu_sc0003649.1_g000021 Rmu_ssc0000198.1_g000003 Rmu_ssc0000359.1_g000079
rosa_roxburghii	Rroxscaffold_175G00432130 Rroxscaffold_2G00078080 Rroxscaffold_2G00078110 Rroxscaffold_2G00078140 Rroxscaffold_2G00078190 Rroxscaffold_2G00078380
rosa_rugosa	Rorug02G0575700 Rorug02G0577500 Rorug06G0013300
rosa_samantha	Rh2AG655100 Rh2AG658300 Rh2AG658500 Rh2BG666300 Rh2BG669300 Rh2BG669500 Rh2CG630500 Rh2CG632400 Rh2CG632500 Rh2DG680900 Rh2DG683100 Rh2DG683200
rosa_wichuraiana	Rw2G053770 Rw2G053910 Rw2G053930 Rw6G011780

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AasI	GACNNNNNNGTC	1 cut(s)	677
AciI	CCGC	2 cut(s)	498, 665
AcuI	CTGAAG	1 cut(s)	158
AfaI	GTAC	1 cut(s)	801
AgsI	TTSAA	3 cut(s)	400, 707, 806
AjnI	CCWGG	2 cut(s)	180, 301
AluBI	AGCT	3 cut(s)	256, 424, 561
AluI	AGCT	3 cut(s)	256, 424, 561
Alw26I	GTCTC	3 cut(s)	73, 764, 850
AlwNI	CAGNNNCTG	2 cut(s)	181, 434
AoxI	GGCC	3 cut(s)	30, 147, 826
ArsI	GACNNNNNNTTYG	2 cut(s)	816, 848
Asp700I	GAANNNNTTC	1 cut(s)	171
AspLEI	GCGC	1 cut(s)	658
AspS9I	GGNCC	2 cut(s)	368, 633
AsuHPI	GGTGA	4 cut(s)	353, 462, 579, 638
AvaII	GGWCC	2 cut(s)	368, 633
BbsI	GAAGAC	1 cut(s)	675
BccI	CCATC	3 cut(s)	165, 169, 746
BciT130I	CCWGG	2 cut(s)	182, 303
BclI	TGATCA	1 cut(s)	111
BcoDI	GTCTC	3 cut(s)	73, 764, 850
BfaI	CTAG	3 cut(s)	92, 620, 830
BfmI	CTRYAG	2 cut(s)	351, 606
Bme1390I	CCNGG	2 cut(s)	182, 303
Bme18I	GGWCC	2 cut(s)	368, 633
BmgT120I	GGNCC	2 cut(s)	368, 633
BmiI	GGNNCC	1 cut(s)	726
BmrFI	CCNGG	2 cut(s)	182, 303
BmsI	GCATC	2 cut(s)	476, 800
BpiI	GAAGAC	1 cut(s)	675
BpmI	CTGGAG	1 cut(s)	645
BpuEI	CTTGAG	2 cut(s)	788, 874
BsaAI	YACGTR	1 cut(s)	799
BsaJI	CCNNGG	3 cut(s)	102, 629, 729
BsaWI	WCCGGW	1 cut(s)	448
BsaXI	ACNNNNNCTCC	6 cut(s)	229, 259, 748, 766, 778, 796
BseBI	CCWGG	2 cut(s)	182, 303
BseDI	CCNNGG	3 cut(s)	102, 629, 729
BseGI	GGATG	1 cut(s)	157
BseRI	GAGGAG	3 cut(s)	27, 182, 234
BsgI	GTGCAG	1 cut(s)	429
BshFI	GGCC	3 cut(s)	32, 149, 828
BsiSI	CCGG	1 cut(s)	449
BsmAI	GTCTC	3 cut(s)	73, 764, 850
BsmBI	CGTCTC	1 cut(s)	73
BsnI	GGCC	3 cut(s)	32, 149, 828
Bsp143I	GATC	3 cut(s)	111, 187, 387
BspACI	CCGC	2 cut(s)	498, 665
BspANI	GGCC	3 cut(s)	32, 149, 828
BspHI	TCATGA	1 cut(s)	195
BspLI	GGNNCC	1 cut(s)	726
BspMAI	CTGCAG	1 cut(s)	355
BspQI	GCTCTTC	1 cut(s)	884
BssECI	CCNNGG	3 cut(s)	102, 629, 729
BssMI	GATC	3 cut(s)	111, 187, 387
BssT1I	CCWWGG	2 cut(s)	102, 729
Bst2UI	CCWGG	2 cut(s)	182, 303
Bst4CI	ACNGT	3 cut(s)	674, 764, 900
Bst6I	CTCTTC	4 cut(s)	28, 378, 556, 884
BstBAI	YACGTR	1 cut(s)	799
BstC8I	GCNNGC	5 cut(s)	86, 292, 426, 465, 498
BstDEI	CTNAG	1 cut(s)	249
BstDSI	CCRYGG	1 cut(s)	629
BstF5I	GGATG	1 cut(s)	157
BstHHI	GCGC	1 cut(s)	658
BstKTI	GATC	3 cut(s)	114, 190, 390
BstMAI	GTCTC	3 cut(s)	73, 764, 850
BstMBI	GATC	3 cut(s)	111, 187, 387
BstMWI	GCNNNNNNNGC	5 cut(s)	296, 305, 430, 452, 662
BstNI	CCWGG	2 cut(s)	182, 303
BstNSI	RCATGY	1 cut(s)	743
BstSCI	CCNGG	2 cut(s)	180, 301
BstSFI	CTRYAG	2 cut(s)	351, 606
BstSNI	TACGTA	1 cut(s)	799
BstV2I	GAAGAC	1 cut(s)	675
BsuRI	GGCC	3 cut(s)	32, 149, 828
BtgI	CCRYGG	1 cut(s)	629
BtsCI	GGATG	1 cut(s)	157
Cac8I	GCNNGC	5 cut(s)	86, 292, 426, 465, 498
CaiI	CAGNNNCTG	2 cut(s)	181, 434
CciI	TCATGA	1 cut(s)	195
CfoI	GCGC	1 cut(s)	658
Cfr13I	GGNCC	2 cut(s)	368, 633
Csp6I	GTAC	1 cut(s)	800
CviAII	CATG	4 cut(s)	196, 268, 391, 740
CviQI	GTAC	1 cut(s)	800
DdeI	CTNAG	1 cut(s)	249
DpnI	GATC	3 cut(s)	113, 189, 389
DpnII	GATC	3 cut(s)	111, 187, 387
DrdI	GACNNNNNNGTC	1 cut(s)	677
DseDI	GACNNNNNNGTC	1 cut(s)	677
Eam1104I	CTCTTC	4 cut(s)	28, 378, 556, 884
EarI	CTCTTC	4 cut(s)	28, 378, 556, 884
Eco105I	TACGTA	1 cut(s)	799
Eco130I	CCWWGG	2 cut(s)	102, 729
Eco147I	AGGCCT	1 cut(s)	828
Eco32I	GATATC	1 cut(s)	713
Eco47I	GGWCC	2 cut(s)	368, 633
Eco57I	CTGAAG	1 cut(s)	158
EcoO109I	RGGNCCY	1 cut(s)	368
EcoRII	CCWGG	2 cut(s)	180, 301
EcoRV	GATATC	1 cut(s)	713
EcoT14I	CCWWGG	2 cut(s)	102, 729
EcoT22I	ATGCAT	1 cut(s)	877
ErhI	CCWWGG	2 cut(s)	102, 729
Esp3I	CGTCTC	1 cut(s)	73
FaeI	CATG	4 cut(s)	199, 271, 394, 743
FalI	AAGNNNNNCTT	2 cut(s)	684, 716
FatI	CATG	4 cut(s)	195, 267, 390, 739
FauI	CCCGC	1 cut(s)	505
FauNDI	CATATG	1 cut(s)	325
FbaI	TGATCA	1 cut(s)	111
FokI	GGATG	1 cut(s)	144
FspBI	CTAG	3 cut(s)	92, 620, 830
GlaI	GCGC	1 cut(s)	657
GsuI	CTGGAG	1 cut(s)	645
HaeIII	GGCC	3 cut(s)	32, 149, 828
HapII	CCGG	1 cut(s)	449
HhaI	GCGC	1 cut(s)	658
Hin1II	CATG	4 cut(s)	199, 271, 394, 743
Hin6I	GCGC	1 cut(s)	656
HinP1I	GCGC	1 cut(s)	656
HinfI	GANTC	5 cut(s)	17, 52, 545, 580, 862
HpaII	CCGG	1 cut(s)	449
HphI	GGTGA	4 cut(s)	353, 462, 579, 638
Hpy188I	TCNGA	6 cut(s)	37, 166, 177, 441, 751, 842
HpyAV	CCTTC	2 cut(s)	386, 659
HpyCH4III	ACNGT	3 cut(s)	674, 764, 900
HpyCH4IV	ACGT	1 cut(s)	798
HpyCH4V	TGCA	7 cut(s)	308, 353, 428, 446, 739, 791, 875
HpyF10VI	GCNNNNNNNGC	5 cut(s)	296, 305, 430, 452, 662
HpyF3I	CTNAG	1 cut(s)	249
HpySE526I	ACGT	1 cut(s)	798
Hsp92II	CATG	4 cut(s)	199, 271, 394, 743
HspAI	GCGC	1 cut(s)	656
Ksp22I	TGATCA	1 cut(s)	111
Kzo9I	GATC	3 cut(s)	111, 187, 387
LguI	GCTCTTC	1 cut(s)	884
LmnI	GCTCC	2 cut(s)	304, 566
LweI	GCATC	2 cut(s)	476, 800
MaeI	CTAG	3 cut(s)	92, 620, 830
MaeII	ACGT	1 cut(s)	798
MaeIII	GTNAC	1 cut(s)	758
MalI	GATC	3 cut(s)	113, 189, 389
MboI	GATC	3 cut(s)	111, 187, 387
MboII	GAAGA	8 cut(s)	15, 107, 395, 502, 543, 546, 680, 901
MluCI	AATT	2 cut(s)	218, 309
Mph1103I	ATGCAT	1 cut(s)	877
MroXI	GAANNNNTTC	1 cut(s)	171
MslI	CAYNNNNRTG	2 cut(s)	200, 870
MspA1I	CMGCKG	1 cut(s)	665
MspI	CCGG	1 cut(s)	449
MspR9I	CCNGG	2 cut(s)	182, 303
MvaI	CCWGG	2 cut(s)	182, 303
MwoI	GCNNNNNNNGC	5 cut(s)	296, 305, 430, 452, 662
NdeI	CATATG	1 cut(s)	325
NdeII	GATC	3 cut(s)	111, 187, 387
NlaIII	CATG	4 cut(s)	199, 271, 394, 743
NlaIV	GGNNCC	1 cut(s)	726
NsiI	ATGCAT	1 cut(s)	877
NspI	RCATGY	1 cut(s)	743
PagI	TCATGA	1 cut(s)	195
PceI	AGGCCT	1 cut(s)	828
PciSI	GCTCTTC	1 cut(s)	884
PdmI	GAANNNNTTC	1 cut(s)	171
PfeI	GAWTC	5 cut(s)	17, 52, 545, 580, 862
Ppu21I	YACGTR	1 cut(s)	799
PpuMI	RGGWCCY	1 cut(s)	368
Psp5II	RGGWCCY	1 cut(s)	368
Psp6I	CCWGG	2 cut(s)	180, 301
PspGI	CCWGG	2 cut(s)	180, 301
PspN4I	GGNNCC	1 cut(s)	726
PspPI	GGNCC	2 cut(s)	368, 633
PspPPI	RGGWCCY	1 cut(s)	368
PstI	CTGCAG	1 cut(s)	355
PstNI	CAGNNNCTG	2 cut(s)	181, 434
RsaI	GTAC	1 cut(s)	801
RsaNI	GTAC	1 cut(s)	800
RseI	CAYNNNNRTG	2 cut(s)	200, 870
SapI	GCTCTTC	1 cut(s)	884
Sau3AI	GATC	3 cut(s)	111, 187, 387
Sau96I	GGNCC	2 cut(s)	368, 633
ScrFI	CCNGG	2 cut(s)	182, 303
SfaNI	GCATC	2 cut(s)	476, 800
SfcI	CTRYAG	2 cut(s)	351, 606
SinI	GGWCC	2 cut(s)	368, 633
SmiMI	CAYNNNNRTG	2 cut(s)	200, 870
SmlI	CTYRAG	2 cut(s)	767, 853
SmoI	CTYRAG	2 cut(s)	767, 853
SnaBI	TACGTA	1 cut(s)	799
Sse9I	AATT	2 cut(s)	218, 309
SseBI	AGGCCT	1 cut(s)	828
SsiI	CCGC	2 cut(s)	498, 665
SspMI	CTAG	3 cut(s)	92, 620, 830
StuI	AGGCCT	1 cut(s)	828
StyD4I	CCNGG	2 cut(s)	180, 301
StyI	CCWWGG	2 cut(s)	102, 729
TaaI	ACNGT	3 cut(s)	674, 764, 900
TaiI	ACGT	1 cut(s)	801
TaqI	TCGA	1 cut(s)	211
TasI	AATT	2 cut(s)	218, 309
TfiI	GAWTC	5 cut(s)	17, 52, 545, 580, 862
TspDTI	ATGAA	4 cut(s)	15, 17, 212, 312
TspGWI	ACGGA	1 cut(s)	646
VpaK11BI	GGWCC	2 cut(s)	368, 633
XbaI	TCTAGA	2 cut(s)	91, 619
XceI	RCATGY	1 cut(s)	743
XmnI	GAANNNNTTC	1 cut(s)	171
XspI	CTAG	3 cut(s)	92, 620, 830
Zsp2I	ATGCAT	1 cut(s)	877

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.