Basic Information

Type: gene

Biological Identity

Species

malus_domestica

Chromosome

Chr09

Orthogroup ID

OG0001373

Physical Location & Seq

Genomic Coordinates Reverse (-)

1077936 .. 1080438

Gene Structure 2503 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

MD09G1017300.v1.1.491

Sequence Viewer

CDS Protein Promoter (2k)

Length: 756 bp

ATGATCTGTGATGCTTTTTCTCACATACCCTTGAAGAGAAGGAAGTTCAGAAGCATTGATCCCATGGAGGCCGAAGAAGCTCAGGCCAAGCTCACAGCAGCAAAAGAAAAGTTCGGGAGAGAAATCCGTGTTTTTGAAACATCAGCATCTTCTTCTTCTTCACAAAGTGAAGAGTCTAAAACTGAGGAGCCAGAGGATTTCTATGAGTTCACTGCAGAAGATTATTATCGGGTTTTGAATGCCAAAAAGGAAGATAACACTCTTAAAACGCGAAAGTTAAGAGAAGCAGAGAAGGCAGCCCGCAGGTCAAAAATAACCAAGACTGTGATCAGGGTTCGATTTCCTGATAACCACACATTAGAGGCCACTTTTAATCCTTCGGAAACAGTTCAGAGCTTGGTTGATCTCGTTGTCAAAGTGGTTGCTCGACCAGATTTACCATTCTATATATATACTACTCCTCCGAAGAAGCCAATAAAAGACATGTCACAGGATTTTCACACTGCTGGCTTTGTTCCTGGTGCAATTGTGTACTTTTCATATGATATACCGAAAGATGATGCTGCAGATGCCATGTCAGGTCCCTTTCTTCTGGAAGAGATCATGTCTTTGAAAGGTTTGGAGCTCATCAATAAGCATGTAGAGCCGCCTGTTCAGTGTGCACCAGAAACCATAACGGAGCCACCGCCCCCTGTAGTCCCAGAGAAGAAGCCTGAAGGGAAGAAACCTGCTAAGCCAAAGTGGCTGAAACTGTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0005488 GO:0005515 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0005654 GO:0005886 GO:0008150 GO:0009893 GO:0009987 GO:0010604 GO:0016020 GO:0016043 GO:0019222 GO:0019899 GO:0022411 GO:0031323 GO:0031325 GO:0031399 GO:0031401 GO:0031974 GO:0031981 GO:0032268 GO:0032270 GO:0032501 GO:0032502 GO:0032984 GO:0035265 GO:0040007 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043233 GO:0043933 GO:0044422 GO:0044424 GO:0044428 GO:0044446 GO:0044464 GO:0048518 GO:0048522 GO:0048589 GO:0050789 GO:0050794 GO:0051117 GO:0051171 GO:0051173 GO:0051246 GO:0051247 GO:0060255 GO:0065007 GO:0070013 GO:0071840 GO:0071944 GO:0080090

KEGG Pathways

Metabolic & Signaling

ko05202 map05202

Pfam Domains

Protein Families

UBX

Protein Analysis

252

Amino Acids

28.47

Weight (kDa)

6.93

Isoelectric Point (pI)

61.99

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
UBX	PF00789	104 - 172	1.5e-08	UBX domain

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0001373)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT3G27310
fragaria_vesca	FvH4_2g09210 FvH4_3g43800 FvH4_6g52650 FvH4_6g52820 FvH4_6g52860
malus_domestica	MD09G1017300.v1.1 MD10G1138200.v1.1 MD17G1018100.v1.1
prunus_persica	Prupe.3G299600_v2.0.a1 Prupe.3G299600_v2.0.a1 Prupe.8G176800_v2.0.a1
pyrus_communis	pycom05g12990 pycom111g01420
rosa_chinensis	RchiOBHm_Chr2g0174181 RchiOBHm_Chr2g0174441 RchiOBHm_Chr6g0265061
rosa_laevigata	RLG00000014212 RLG00000022254 RLG00000022266 RLG00000022272
rosa_multiflora	Rmu_sc0000954.1_g000001 Rmu_sc0001533.1_g000005 Rmu_sc0003649.1_g000013 Rmu_sc0003649.1_g000018 Rmu_sc0003649.1_g000021 Rmu_ssc0000198.1_g000003 Rmu_ssc0000359.1_g000079
rosa_roxburghii	Rroxscaffold_175G00432130 Rroxscaffold_2G00078080 Rroxscaffold_2G00078110 Rroxscaffold_2G00078140 Rroxscaffold_2G00078190 Rroxscaffold_2G00078380
rosa_rugosa	Rorug02G0575700 Rorug02G0577500 Rorug06G0013300
rosa_samantha	Rh2AG655100 Rh2AG658300 Rh2AG658500 Rh2BG666300 Rh2BG669300 Rh2BG669500 Rh2CG630500 Rh2CG632400 Rh2CG632500 Rh2DG680900 Rh2DG683100 Rh2DG683200
rosa_wichuraiana	Rw2G053770 Rw2G053910 Rw2G053930 Rw6G011780

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
Acc36I	ACCTGC	2 cut(s)	294, 736
AccII	CGCG	1 cut(s)	271
AciI	CCGC	3 cut(s)	301, 647, 686
AclWI	GGATC	1 cut(s)	53
AcuI	CTGAAG	1 cut(s)	735
AdeI	CACNNNGTG	1 cut(s)	167
AfaI	GTAC	1 cut(s)	533
AflIII	ACRYGT	1 cut(s)	483
AgsI	TTSAA	4 cut(s)	34, 137, 238, 613
AjnI	CCWGG	1 cut(s)	517
AluBI	AGCT	4 cut(s)	80, 91, 396, 625
AluI	AGCT	4 cut(s)	80, 91, 396, 625
Alw21I	GWGCWC	2 cut(s)	627, 664
Alw44I	GTGCAC	1 cut(s)	660
AlwI	GGATC	1 cut(s)	53
AoxI	GGCC	3 cut(s)	69, 84, 363
ApaLI	GTGCAC	1 cut(s)	660
ApeKI	GCWGC	3 cut(s)	98, 296, 563
Asp700I	GAANNNNTTC	1 cut(s)	387
AspS9I	GGNCC	1 cut(s)	581
AvaII	GGWCC	1 cut(s)	581
BaeGI	GKGCMC	1 cut(s)	664
BanII	GRGCYC	1 cut(s)	627
Bbv12I	GWGCWC	2 cut(s)	627, 664
BbvI	GCAGC	3 cut(s)	110, 308, 550
BciT130I	CCWGG	1 cut(s)	519
BclI	TGATCA	1 cut(s)	327
BfmI	CTRYAG	3 cut(s)	213, 564, 693
BfuAI	ACCTGC	2 cut(s)	294, 736
BglI	GCCNNNNNGGC	1 cut(s)	742
BisI	GCNGC	4 cut(s)	99, 297, 564, 647
BlpI	GCTNAGC	1 cut(s)	732
BlsI	GCNGC	4 cut(s)	100, 298, 565, 648
Bme1390I	CCNGG	1 cut(s)	519
Bme18I	GGWCC	1 cut(s)	581
BmgT120I	GGNCC	1 cut(s)	581
BmiI	GGNNCC	3 cut(s)	189, 583, 681
BmrFI	CCNGG	1 cut(s)	519
BmsI	GCATC	3 cut(s)	155, 550, 559
Bpu10I	CCTNAGC	1 cut(s)	81
Bpu1102I	GCTNAGC	1 cut(s)	732
BsaBI	GATNNNNATC	1 cut(s)	225
BsaJI	CCNNGG	1 cut(s)	63
BsaXI	ACNNNNNCTCC	2 cut(s)	445, 475
Bse8I	GATNNNNATC	1 cut(s)	225
BseBI	CCWGG	1 cut(s)	519
BseDI	CCNNGG	1 cut(s)	63
BseJI	GATNNNNATC	1 cut(s)	225
BseMII	CTCAG	2 cut(s)	95, 174
BseRI	GAGGAG	2 cut(s)	200, 450
BseSI	GKGCMC	1 cut(s)	664
BseXI	GCAGC	3 cut(s)	110, 308, 550
Bsh1236I	CGCG	1 cut(s)	271
BshFI	GGCC	3 cut(s)	71, 86, 365
BsiHKAI	GWGCWC	2 cut(s)	627, 664
BslFI	GGGAC	2 cut(s)	567, 683
BsmFI	GGGAC	2 cut(s)	567, 683
BsmI	GAATGC	1 cut(s)	244
BsnI	GGCC	3 cut(s)	71, 86, 365
Bsp1286I	GDGCHC	2 cut(s)	627, 664
Bsp143I	GATC	5 cut(s)	3, 58, 327, 403, 600
Bsp1720I	GCTNAGC	1 cut(s)	732
Bsp19I	CCATGG	1 cut(s)	63
BspACI	CCGC	3 cut(s)	301, 647, 686
BspANI	GGCC	3 cut(s)	71, 86, 365
BspCNI	CTCAG	2 cut(s)	94, 175
BspFNI	CGCG	1 cut(s)	271
BspLI	GGNNCC	3 cut(s)	189, 583, 681
BspMAI	CTGCAG	2 cut(s)	217, 568
BspMI	ACCTGC	2 cut(s)	294, 736
BspPI	GGATC	1 cut(s)	53
BssECI	CCNNGG	1 cut(s)	63
BssMI	GATC	5 cut(s)	3, 58, 327, 403, 600
BssT1I	CCWWGG	1 cut(s)	63
Bst2UI	CCWGG	1 cut(s)	519
Bst4CI	ACNGT	3 cut(s)	325, 388, 753
Bst6I	CTCTTC	3 cut(s)	29, 165, 591
BstC8I	GCNNGC	2 cut(s)	301, 508
BstDEI	CTNAG	3 cut(s)	81, 183, 732
BstDSI	CCRYGG	1 cut(s)	63
BstFNI	CGCG	1 cut(s)	271
BstKTI	GATC	5 cut(s)	6, 61, 330, 406, 603
BstMBI	GATC	5 cut(s)	3, 58, 327, 403, 600
BstMWI	GCNNNNNNNGC	5 cut(s)	77, 293, 569, 643, 742
BstNI	CCWGG	1 cut(s)	519
BstNSI	RCATGY	2 cut(s)	487, 641
BstSCI	CCNGG	1 cut(s)	517
BstSFI	CTRYAG	3 cut(s)	213, 564, 693
BstSLI	GKGCMC	1 cut(s)	664
BstUI	CGCG	1 cut(s)	271
BstV1I	GCAGC	3 cut(s)	110, 308, 550
BsuRI	GGCC	3 cut(s)	71, 86, 365
BtgI	CCRYGG	1 cut(s)	63
BtsI	GCAGTG	2 cut(s)	210, 501
BtsIMutI	CAGTG	3 cut(s)	210, 501, 662
BveI	ACCTGC	2 cut(s)	294, 736
Cac8I	GCNNGC	2 cut(s)	301, 508
Cfr13I	GGNCC	1 cut(s)	581
Csp6I	GTAC	1 cut(s)	532
CviAII	CATG	5 cut(s)	64, 484, 574, 604, 638
CviQI	GTAC	1 cut(s)	532
DdeI	CTNAG	3 cut(s)	81, 183, 732
DpnI	GATC	5 cut(s)	5, 60, 329, 405, 602
DpnII	GATC	5 cut(s)	3, 58, 327, 403, 600
DraIII	CACNNNGTG	1 cut(s)	167
Eam1104I	CTCTTC	3 cut(s)	29, 165, 591
EarI	CTCTTC	3 cut(s)	29, 165, 591
Ecl136II	GAGCTC	1 cut(s)	625
Eco130I	CCWWGG	1 cut(s)	63
Eco24I	GRGCYC	1 cut(s)	627
Eco47I	GGWCC	1 cut(s)	581
Eco53kI	GAGCTC	1 cut(s)	625
Eco57I	CTGAAG	1 cut(s)	735
EcoICRI	GAGCTC	1 cut(s)	625
EcoO109I	RGGNCCY	1 cut(s)	581
EcoRII	CCWGG	1 cut(s)	517
EcoT14I	CCWWGG	1 cut(s)	63
EcoT38I	GRGCYC	1 cut(s)	627
ErhI	CCWWGG	1 cut(s)	63
FaeI	CATG	5 cut(s)	67, 487, 577, 607, 641
FaqI	GGGAC	2 cut(s)	567, 683
FatI	CATG	5 cut(s)	63, 483, 573, 603, 637
FauI	CCCGC	1 cut(s)	308
FauNDI	CATATG	1 cut(s)	541
FbaI	TGATCA	1 cut(s)	327
Fnu4HI	GCNGC	4 cut(s)	99, 297, 564, 647
FriOI	GRGCYC	1 cut(s)	627
Fsp4HI	GCNGC	4 cut(s)	99, 297, 564, 647
GluI	GCNGC	4 cut(s)	99, 297, 564, 647
HaeIII	GGCC	3 cut(s)	71, 86, 365
Hin1II	CATG	5 cut(s)	67, 487, 577, 607, 641
HinfI	GANTC	1 cut(s)	173
Hpy166II	GTNNAC	3 cut(s)	210, 532, 662
Hpy188I	TCNGA	4 cut(s)	50, 382, 393, 465
Hpy188III	TCNNGA	3 cut(s)	115, 344, 593
Hpy8I	GTNNAC	3 cut(s)	210, 532, 662
HpyAV	CCTTC	4 cut(s)	33, 286, 387, 710
HpyCH4III	ACNGT	3 cut(s)	325, 388, 753
HpyCH4V	TGCA	4 cut(s)	215, 524, 566, 662
HpyF10VI	GCNNNNNNNGC	5 cut(s)	77, 293, 569, 643, 742
HpyF3I	CTNAG	3 cut(s)	81, 183, 732
Hsp92II	CATG	5 cut(s)	67, 487, 577, 607, 641
Ksp22I	TGATCA	1 cut(s)	327
Kzo9I	GATC	5 cut(s)	3, 58, 327, 403, 600
LmnI	GCTCC	3 cut(s)	187, 622, 679
Lsp1109I	GCAGC	3 cut(s)	110, 308, 550
LweI	GCATC	3 cut(s)	155, 550, 559
MaeIII	GTNAC	1 cut(s)	486
MalI	GATC	5 cut(s)	5, 60, 329, 405, 602
MboI	GATC	5 cut(s)	3, 58, 327, 403, 600
MfeI	CAATTG	1 cut(s)	525
MhlI	GDGCHC	2 cut(s)	627, 664
MluCI	AATT	1 cut(s)	525
MlyI	GAGTC	1 cut(s)	182
MnlI	CCTC	5 cut(s)	61, 178, 187, 355, 471
MroXI	GAANNNNTTC	1 cut(s)	387
MseI	TTAA	3 cut(s)	264, 278, 372
MspR9I	CCNGG	1 cut(s)	519
MunI	CAATTG	1 cut(s)	525
Mva1269I	GAATGC	1 cut(s)	244
MvaI	CCWGG	1 cut(s)	519
MvnI	CGCG	1 cut(s)	271
MwoI	GCNNNNNNNGC	5 cut(s)	77, 293, 569, 643, 742
NcoI	CCATGG	1 cut(s)	63
NdeI	CATATG	1 cut(s)	541
NdeII	GATC	5 cut(s)	3, 58, 327, 403, 600
NlaIII	CATG	5 cut(s)	67, 487, 577, 607, 641
NlaIV	GGNNCC	3 cut(s)	189, 583, 681
NmuCI	GTSAC	1 cut(s)	486
NspI	RCATGY	2 cut(s)	487, 641
PciI	ACATGT	1 cut(s)	483
PctI	GAATGC	1 cut(s)	244
PdmI	GAANNNNTTC	1 cut(s)	387
PkrI	GCNGC	4 cut(s)	100, 298, 565, 648
PleI	GAGTC	1 cut(s)	181
PpsI	GAGTC	1 cut(s)	181
PpuMI	RGGWCCY	1 cut(s)	581
PscI	ACATGT	1 cut(s)	483
Psp124BI	GAGCTC	1 cut(s)	627
Psp5II	RGGWCCY	1 cut(s)	581
Psp6I	CCWGG	1 cut(s)	517
PspGI	CCWGG	1 cut(s)	517
PspN4I	GGNNCC	3 cut(s)	189, 583, 681
PspPI	GGNCC	1 cut(s)	581
PspPPI	RGGWCCY	1 cut(s)	581
PstI	CTGCAG	2 cut(s)	217, 568
RsaI	GTAC	1 cut(s)	533
RsaNI	GTAC	1 cut(s)	532
SacI	GAGCTC	1 cut(s)	627
SaqAI	TTAA	3 cut(s)	264, 278, 372
SatI	GCNGC	4 cut(s)	99, 297, 564, 647
Sau3AI	GATC	5 cut(s)	3, 58, 327, 403, 600
Sau96I	GGNCC	1 cut(s)	581
SchI	GAGTC	1 cut(s)	182
ScrFI	CCNGG	1 cut(s)	519
SduI	GDGCHC	2 cut(s)	627, 664
SetI	ASST	8 cut(s)	82, 93, 308, 398, 583, 619, 627, 730
SfaNI	GCATC	3 cut(s)	155, 550, 559
SfcI	CTRYAG	3 cut(s)	213, 564, 693
SinI	GGWCC	1 cut(s)	581
Sse9I	AATT	1 cut(s)	525
SsiI	CCGC	3 cut(s)	301, 647, 686
SstI	GAGCTC	1 cut(s)	627
StyD4I	CCNGG	1 cut(s)	517
StyI	CCWWGG	1 cut(s)	63
TaaI	ACNGT	3 cut(s)	325, 388, 753
TaqI	TCGA	2 cut(s)	337, 427
TasI	AATT	1 cut(s)	525
TatI	WGTACW	1 cut(s)	531
TauI	GCSGC	1 cut(s)	649
Tru1I	TTAA	3 cut(s)	264, 278, 372
Tru9I	TTAA	3 cut(s)	264, 278, 372
TscAI	CASTG	3 cut(s)	217, 508, 662
TseFI	GTSAC	1 cut(s)	486
TseI	GCWGC	3 cut(s)	98, 296, 563
Tsp45I	GTSAC	1 cut(s)	486
TspDTI	ATGAA	1 cut(s)	528
TspGWI	ACGGA	2 cut(s)	116, 692
TspRI	CASTG	3 cut(s)	217, 508, 662
VneI	GTGCAC	1 cut(s)	660
VpaK11BI	GGWCC	1 cut(s)	581
XceI	RCATGY	2 cut(s)	487, 641
XmnI	GAANNNNTTC	1 cut(s)	387

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.