FvH4_3g43800

No description available

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
fragaria_vesca
Fvb3
OG0001373
Physical Location & Seq
Forward (+)
36497778 .. 36500380
2603 bp
Loading structure...
UTR
Exon/CDS
Intron
FvH4_3g43800.t1

Sequence Viewer

Length: 915 bp
ATGGGGGTTTCTTTCTTTGTTCAGGACAGGGTTCGTCCCTCCAACACAGACCTGCTTGAAATGATTGGCCATTGCAGAGGTCAAATTTGCTTCAGAAATGCGAGCAGGAGACAGATAGTGGTTTGGGATTTGCAAGGTCAAAGAATAAGGACAGTTGTTGAGGATGTGGATGAAGCAGGACAATCGAGCTACGGCTTTGGGCACACAAATGGGGTTTTTATGATTGTCAGGCTTGGAAGGGATGCTTTGTTTTATAACGGGGAGGATTATGGATACCACCTCCATACTTTTGTTGAGGGACAACAACCACCCTGGGCCAGATTTGAATCTAGGTTGGCTGCTCGCTTCAATTTCAGAACCGGTGGGAGTGCAATATTGGTCTCTGAGAATGGCATGCTTTACTGGAAAGCACAGCTTGATGGAGGTGCTTTTATTATCACCTATAATTTGGAGACCCGAAAAATGGGCGGCTTGGCAGCGCCTGAAGATGATGGTTTTAGTAACTTGAACATGGTCTTGGGGCATGGTTTTGATGGACAGCTCTCTGCATCTGTATATCTTCCGCCATCAGGAAATGATGAGTACTCGATGCTGCACGTATGGGTTTTGCAAAGGGAAGGTCTGTCATTCCACTGGCACAAGTTGCATGCTTTCCGTTCAACTGTATTCAATGTTGAAGATGATTTCTTCATTCCGCTTGTGTGCTACTATGGCGTGGGAGACGATGGGGTCATTCATATACTCCTCCATAGGAACAAAGAAGAAATTGTGTGTGTGATACCGGCAACAAAGCAGGTTCTACCGGTGGAGGGTGCTGCGTTTCCACCAGCAGGAATCCTCGCCGTACCATCTGGAATTCCCATGGAAGTTGCAGATTCAAGGAAATTCAAAGCCACACTGGCTTCTCGGTTTTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
No domains found.

Protein Analysis

305

Amino Acids

34.01

Weight (kDa)

5.99

Isoelectric Point (pI)

38.82

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AanI TTATAA 1 cut(s) 255
AasI GACNNNNNNGTC 1 cut(s) 728
Acc36I ACCTGC 2 cut(s) 60, 784
AciI CCGC 3 cut(s) 468, 563, 695
AcoI YGGCCR 1 cut(s) 67
AcsI RAATTY 3 cut(s) 84, 855, 884
AcuI CTGAAG 2 cut(s) 76, 504
AfaI GTAC 2 cut(s) 584, 846
AfiI CCNNNNNNNGG 4 cut(s) 463, 569, 809, 830
AgeI ACCGGT 2 cut(s) 359, 802
AgsI TTSAA 9 cut(s) 59, 326, 349, 508, 660, 670, 677, 879, 889
AjnI CCWGG 1 cut(s) 311
AjuI GAANNNNNNNTTGG 2 cut(s) 500, 532
AluBI AGCT 3 cut(s) 189, 415, 541
AluI AGCT 3 cut(s) 189, 415, 541
Alw26I GTCTC 4 cut(s) 103, 385, 446, 714
AlwNI CAGNNNCTG 1 cut(s) 482
AoxI GGCC 2 cut(s) 67, 315
ApeKI GCWGC 4 cut(s) 338, 476, 592, 815
ApoI RAATTY 3 cut(s) 84, 855, 884
ArsI GACNNNNNNTTYG 2 cut(s) 604, 636
AsiGI ACCGGT 2 cut(s) 359, 802
AspLEI GCGC 1 cut(s) 481
AspS9I GGNCC 1 cut(s) 315
AsuHPI GGTGA 1 cut(s) 430
BaeGI GKGCMC 1 cut(s) 204
BalI TGGCCA 1 cut(s) 69
BbvI GCAGC 4 cut(s) 325, 488, 579, 802
BccI CCATC 6 cut(s) 413, 485, 527, 574, 719, 856
BceAI ACGGC 2 cut(s) 208, 827
BcgI CGANNNNNNTGC 2 cut(s) 165, 199
BciT130I CCWGG 1 cut(s) 313
BciVI GTATCC 1 cut(s) 266
BcoDI GTCTC 4 cut(s) 103, 385, 446, 714
BfaI CTAG 1 cut(s) 330
BfoI RGCGCY 1 cut(s) 482
BfuAI ACCTGC 2 cut(s) 60, 784
BfuI GTATCC 1 cut(s) 266
BglI GCCNNNNNGGC 1 cut(s) 899
BisI GCNGC 5 cut(s) 339, 469, 477, 593, 816
BlsI GCNGC 5 cut(s) 340, 470, 478, 594, 817
BmcAI AGTACT 1 cut(s) 584
Bme1390I CCNGG 1 cut(s) 313
BmgT120I GGNCC 1 cut(s) 315
BmrFI CCNGG 1 cut(s) 313
BmsI GCATC 3 cut(s) 232, 557, 579
BsaAI YACGTR 1 cut(s) 598
BsaBI GATNNNNATC 1 cut(s) 325
BsaI GGTCTC 2 cut(s) 385, 446
BsaJI CCNNGG 3 cut(s) 311, 312, 861
BsaWI WCCGGW 2 cut(s) 359, 802
Bsc4I CCNNNNNNNGG 4 cut(s) 463, 569, 809, 830
Bse118I RCCGGY 3 cut(s) 359, 781, 802
Bse1I ACTGG 3 cut(s) 407, 638, 903
Bse3DI GCAATG 1 cut(s) 70
Bse8I GATNNNNATC 1 cut(s) 325
BseBI CCWGG 1 cut(s) 313
BseDI CCNNGG 3 cut(s) 311, 312, 861
BseGI GGATG 3 cut(s) 169, 175, 247
BseJI GATNNNNATC 1 cut(s) 325
BseLI CCNNNNNNNGG 4 cut(s) 463, 569, 809, 830
BseMI GCAATG 1 cut(s) 70
BseMII CTCAG 1 cut(s) 375
BseNI ACTGG 3 cut(s) 407, 638, 903
BseRI GAGGAG 1 cut(s) 734
BseSI GKGCMC 1 cut(s) 204
BseXI GCAGC 4 cut(s) 325, 488, 579, 802
BsgI GTGCAG 1 cut(s) 578
BshFI GGCC 2 cut(s) 69, 317
BshTI ACCGGT 2 cut(s) 359, 802
BsiSI CCGG 3 cut(s) 360, 782, 803
BslFI GGGAC 2 cut(s) 21, 312
BslI CCNNNNNNNGG 4 cut(s) 463, 569, 809, 830
BsmAI GTCTC 4 cut(s) 103, 385, 446, 714
BsmBI CGTCTC 1 cut(s) 714
BsmFI GGGAC 2 cut(s) 21, 312
BsnI GGCC 2 cut(s) 69, 317
Bso31I GGTCTC 2 cut(s) 385, 446
Bsp1286I GDGCHC 1 cut(s) 204
Bsp19I CCATGG 1 cut(s) 861
BspACI CCGC 3 cut(s) 468, 563, 695
BspANI GGCC 2 cut(s) 69, 317
BspCNI CTCAG 1 cut(s) 376
BspMI ACCTGC 2 cut(s) 60, 784
BspTNI GGTCTC 2 cut(s) 385, 446
BsrDI GCAATG 1 cut(s) 70
BsrFI RCCGGY 3 cut(s) 359, 781, 802
BsrI ACTGG 3 cut(s) 407, 638, 903
BssAI RCCGGY 3 cut(s) 359, 781, 802
BssECI CCNNGG 3 cut(s) 311, 312, 861
BssT1I CCWWGG 1 cut(s) 861
Bst2UI CCWGG 1 cut(s) 313
Bst4CI ACNGT 2 cut(s) 154, 664
BstAPI GCANNNNNTGC 1 cut(s) 643
BstBAI YACGTR 1 cut(s) 598
BstC8I GCNNGC 4 cut(s) 103, 343, 395, 648
BstDEI CTNAG 1 cut(s) 384
BstDSI CCRYGG 1 cut(s) 861
BstF5I GGATG 3 cut(s) 169, 175, 247
BstH2I RGCGCY 1 cut(s) 482
BstHHI GCGC 1 cut(s) 481
BstMAI GTCTC 4 cut(s) 103, 385, 446, 714
BstMWI GCNNNNNNNGC 3 cut(s) 643, 711, 899
BstNI CCWGG 1 cut(s) 313
BstNSI RCATGY 2 cut(s) 397, 650
BstSCI CCNGG 1 cut(s) 311
BstSLI GKGCMC 1 cut(s) 204
BstV1I GCAGC 4 cut(s) 325, 488, 579, 802
BsuI GTATCC 1 cut(s) 266
BsuRI GGCC 2 cut(s) 69, 317
BtgI CCRYGG 1 cut(s) 861
BtsCI GGATG 3 cut(s) 169, 175, 247
BtsIMutI CAGTG 2 cut(s) 631, 896
BveI ACCTGC 2 cut(s) 60, 784
Cac8I GCNNGC 4 cut(s) 103, 343, 395, 648
CaiI CAGNNNCTG 1 cut(s) 482
CfoI GCGC 1 cut(s) 481
Cfr10I RCCGGY 3 cut(s) 359, 781, 802
Cfr13I GGNCC 1 cut(s) 315
Csp6I GTAC 2 cut(s) 583, 845
CspAI ACCGGT 2 cut(s) 359, 802
CviAII CATG 5 cut(s) 394, 511, 524, 647, 862
CviQI GTAC 2 cut(s) 583, 845
DdeI CTNAG 1 cut(s) 384
DrdI GACNNNNNNGTC 1 cut(s) 728
DseDI GACNNNNNNGTC 1 cut(s) 728
EaeI YGGCCR 1 cut(s) 67
EciI GGCGGA 1 cut(s) 552
Eco130I CCWWGG 1 cut(s) 861
Eco31I GGTCTC 2 cut(s) 385, 446
Eco57I CTGAAG 2 cut(s) 76, 504
EcoRI GAATTC 1 cut(s) 855
EcoRII CCWGG 1 cut(s) 311
EcoT14I CCWWGG 1 cut(s) 861
ErhI CCWWGG 1 cut(s) 861
Esp3I CGTCTC 1 cut(s) 714
FaeI CATG 5 cut(s) 397, 514, 527, 650, 865
FalI AAGNNNNNCTT 4 cut(s) 229, 261, 399, 431
FaqI GGGAC 2 cut(s) 21, 312
FatI CATG 5 cut(s) 393, 510, 523, 646, 861
Fnu4HI GCNGC 5 cut(s) 339, 469, 477, 593, 816
FokI GGATG 3 cut(s) 176, 182, 254
Fsp4HI GCNGC 5 cut(s) 339, 469, 477, 593, 816
FspBI CTAG 1 cut(s) 330
GlaI GCGC 1 cut(s) 480
GluI GCNGC 5 cut(s) 339, 469, 477, 593, 816
HaeII RGCGCY 1 cut(s) 482
HaeIII GGCC 2 cut(s) 69, 317
HapII CCGG 3 cut(s) 360, 782, 803
HhaI GCGC 1 cut(s) 481
Hin1II CATG 5 cut(s) 397, 514, 527, 650, 865
Hin6I GCGC 1 cut(s) 479
HinP1I GCGC 1 cut(s) 479
HinfI GANTC 3 cut(s) 326, 834, 875
HpaII CCGG 3 cut(s) 360, 782, 803
HphI GGTGA 1 cut(s) 430
Hpy188I TCNGA 3 cut(s) 95, 356, 385
Hpy188III TCNNGA 3 cut(s) 23, 570, 852
HpyAV CCTTC 2 cut(s) 231, 611
HpyCH4III ACNGT 2 cut(s) 154, 664
HpyCH4IV ACGT 1 cut(s) 597
HpyCH4V TGCA 8 cut(s) 75, 133, 371, 548, 595, 610, 646, 872
HpyF10VI GCNNNNNNNGC 3 cut(s) 643, 711, 899
HpyF3I CTNAG 1 cut(s) 384
HpySE526I ACGT 1 cut(s) 597
Hsp92II CATG 5 cut(s) 397, 514, 527, 650, 865
HspAI GCGC 1 cut(s) 479
Lsp1109I GCAGC 4 cut(s) 325, 488, 579, 802
LweI GCATC 3 cut(s) 232, 557, 579
MaeI CTAG 1 cut(s) 330
MaeII ACGT 1 cut(s) 597
MaeIII GTNAC 1 cut(s) 500
MboII GAAGA 5 cut(s) 497, 551, 679, 689, 773
MhlI GDGCHC 1 cut(s) 204
MlsI TGGCCA 1 cut(s) 69
MluCI AATT 6 cut(s) 84, 349, 445, 765, 855, 884
MluNI TGGCCA 1 cut(s) 69
MmeI TCCRAC 1 cut(s) 66
Mox20I TGGCCA 1 cut(s) 69
MscI TGGCCA 1 cut(s) 69
MslI CAYNNNNRTG 1 cut(s) 207
Msp20I TGGCCA 1 cut(s) 69
MspI CCGG 3 cut(s) 360, 782, 803
MspR9I CCNGG 1 cut(s) 313
MvaI CCWGG 1 cut(s) 313
MwoI GCNNNNNNNGC 3 cut(s) 643, 711, 899
NcoI CCATGG 1 cut(s) 861
NlaIII CATG 5 cut(s) 397, 514, 527, 650, 865
NspI RCATGY 2 cut(s) 397, 650
PaeI GCATGC 2 cut(s) 397, 650
PasI CCCWGGG 1 cut(s) 312
PfeI GAWTC 3 cut(s) 326, 834, 875
PinAI ACCGGT 2 cut(s) 359, 802
PkrI GCNGC 5 cut(s) 340, 470, 478, 594, 817
Ppu21I YACGTR 1 cut(s) 598
PsiI TTATAA 1 cut(s) 255
Psp6I CCWGG 1 cut(s) 311
PspGI CCWGG 1 cut(s) 311
PspPI GGNCC 1 cut(s) 315
PstNI CAGNNNCTG 1 cut(s) 482
RsaI GTAC 2 cut(s) 584, 846
RsaNI GTAC 2 cut(s) 583, 845
RseI CAYNNNNRTG 1 cut(s) 207
SatI GCNGC 5 cut(s) 339, 469, 477, 593, 816
Sau96I GGNCC 1 cut(s) 315
ScaI AGTACT 1 cut(s) 584
ScrFI CCNGG 1 cut(s) 313
SduI GDGCHC 1 cut(s) 204
SfaNI GCATC 3 cut(s) 232, 557, 579
SmiMI CAYNNNNRTG 1 cut(s) 207
SphI GCATGC 2 cut(s) 397, 650
Sse9I AATT 6 cut(s) 84, 349, 445, 765, 855, 884
SsiI CCGC 3 cut(s) 468, 563, 695
SspI AATATT 1 cut(s) 375
SspMI CTAG 1 cut(s) 330
StyD4I CCNGG 1 cut(s) 311
StyI CCWWGG 1 cut(s) 861
TaaI ACNGT 2 cut(s) 154, 664
TaiI ACGT 1 cut(s) 600
TaqI TCGA 2 cut(s) 185, 587
TasI AATT 6 cut(s) 84, 349, 445, 765, 855, 884
TatI WGTACW 1 cut(s) 582
TauI GCSGC 1 cut(s) 471
TfiI GAWTC 3 cut(s) 326, 834, 875
TscAI CASTG 2 cut(s) 638, 903
TseI GCWGC 4 cut(s) 338, 476, 592, 815
TspDTI ATGAA 3 cut(s) 186, 679, 725
TspGWI ACGGA 1 cut(s) 644
TspRI CASTG 2 cut(s) 638, 903
XapI RAATTY 3 cut(s) 84, 855, 884
XceI RCATGY 2 cut(s) 397, 650
XspI CTAG 1 cut(s) 330
ZrmI AGTACT 1 cut(s) 584
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.