Basic Information

Type: gene

Biological Identity

Species

rosa_multiflora

Chromosome

Rmu_ssc0000198.1

Orthogroup ID

OG0001373

Physical Location & Seq

Genomic Coordinates Reverse (-)

14072 .. 16418

Gene Structure 2347 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rmu_ssc0000198.1_g000003.1.cds

Sequence Viewer

CDS Protein Promoter (2k)

Length: 750 bp

atgggcgttggtgggccccggtttgtgacgtgcgccagtgaaactgttgccggccacctgtggattcgtttaggtgtcgtcgccaagctcacagcagcaaaagaaaagtttggcagagaaattcgtgtttttgaaacggcagcatcttcttcttcgcaaaatgtagagtccaatactgaggagccagatgacctttatgagttcactgctgaggattattatcggataatgaataccaagaaggaagataagttcctgaaaacacgaaagattagagaggcagaacaggcagctcgcaggtcaaggataacaaaggctgtgatcagggttcgctttcctgataatacaacattagaggccacttttcatccatcagaaacaattcagagcttggttgatctccttatgaaagtggttgctcgaccagaattatcattccacatatatactactcctcctaagaagctgataaaagacatgacacaggacttttactctgctggctttgctcctggtgcgattgtatatttttcatatgatattccaaaaggtgatgatactgcagatgtcaagtcaggtcctttcctccacgacgagatcatgtctttgaaaggtctggaacttgtgaaagagcatgcagagcctgctcagactgcaccagaacctatacacgaggcacccccccctgttgtccaagagaagaagcctgccgagaaaaaatctgttaagccaaagcggctgaaaatgtga

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0005488 GO:0005515 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0005654 GO:0005886 GO:0008150 GO:0009893 GO:0009987 GO:0010604 GO:0016020 GO:0016043 GO:0019222 GO:0019899 GO:0022411 GO:0031323 GO:0031325 GO:0031399 GO:0031401 GO:0031974 GO:0031981 GO:0032268 GO:0032270 GO:0032501 GO:0032502 GO:0032984 GO:0035265 GO:0040007 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043233 GO:0043933 GO:0044422 GO:0044424 GO:0044428 GO:0044446 GO:0044464 GO:0048518 GO:0048522 GO:0048589 GO:0050789 GO:0050794 GO:0051117 GO:0051171 GO:0051173 GO:0051246 GO:0051247 GO:0060255 GO:0065007 GO:0070013 GO:0071840 GO:0071944 GO:0080090

KEGG Pathways

Metabolic & Signaling

ko05202 map05202

Pfam Domains

Protein Families

UBX

Protein Analysis

249

Amino Acids

27.98

Weight (kDa)

8.44

Isoelectric Point (pI)

42.16

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0001373)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT3G27310
fragaria_vesca	FvH4_2g09210 FvH4_3g43800 FvH4_6g52650 FvH4_6g52820 FvH4_6g52860
malus_domestica	MD09G1017300.v1.1 MD10G1138200.v1.1 MD17G1018100.v1.1
prunus_persica	Prupe.3G299600_v2.0.a1 Prupe.3G299600_v2.0.a1 Prupe.8G176800_v2.0.a1
pyrus_communis	pycom05g12990 pycom111g01420
rosa_chinensis	RchiOBHm_Chr2g0174181 RchiOBHm_Chr2g0174441 RchiOBHm_Chr6g0265061
rosa_laevigata	RLG00000014212 RLG00000022254 RLG00000022266 RLG00000022272
rosa_multiflora	Rmu_sc0000954.1_g000001 Rmu_sc0001533.1_g000005 Rmu_sc0003649.1_g000013 Rmu_sc0003649.1_g000018 Rmu_sc0003649.1_g000021 Rmu_ssc0000198.1_g000003 Rmu_ssc0000359.1_g000079
rosa_roxburghii	Rroxscaffold_175G00432130 Rroxscaffold_2G00078080 Rroxscaffold_2G00078110 Rroxscaffold_2G00078140 Rroxscaffold_2G00078190 Rroxscaffold_2G00078380
rosa_rugosa	Rorug02G0575700 Rorug02G0577500 Rorug06G0013300
rosa_samantha	Rh2AG655100 Rh2AG658300 Rh2AG658500 Rh2BG666300 Rh2BG669300 Rh2BG669500 Rh2CG630500 Rh2CG632400 Rh2CG632500 Rh2DG680900 Rh2DG683100 Rh2DG683200
rosa_wichuraiana	Rw2G053770 Rw2G053910 Rw2G053930 Rw6G011780

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
Acc36I	ACCTGC	1 cut(s)	288
AccB1I	GGYRCC	1 cut(s)	676
AciI	CCGC	1 cut(s)	736
AcoI	YGGCCR	1 cut(s)	52
AcsI	RAATTY	1 cut(s)	120
AgsI	TTSAA	2 cut(s)	134, 610
AjiI	CACGTC	1 cut(s)	30
AjnI	CCWGG	1 cut(s)	511
AloI	GAACNNNNNNTCC	2 cut(s)	236, 268
AluBI	AGCT	4 cut(s)	88, 293, 390, 466
AluI	AGCT	4 cut(s)	88, 293, 390, 466
AlwNI	CAGNNNCTG	1 cut(s)	644
AoxI	GGCC	3 cut(s)	14, 52, 357
ApaI	GGGCCC	1 cut(s)	18
ApeKI	GCWGC	3 cut(s)	95, 140, 290
ApoI	RAATTY	1 cut(s)	120
Asp700I	GAANNNNTTC	1 cut(s)	381
AspLEI	GCGC	1 cut(s)	35
AspS9I	GGNCC	3 cut(s)	14, 15, 578
AsuC2I	CCSGG	1 cut(s)	19
AsuHPI	GGTGA	1 cut(s)	563
AvaII	GGWCC	1 cut(s)	578
BaeGI	GKGCMC	1 cut(s)	18
BanI	GGYRCC	1 cut(s)	676
BanII	GRGCYC	1 cut(s)	18
BauI	CACGAG	1 cut(s)	671
BbvCI	CCTCAGC	1 cut(s)	210
BbvI	GCAGC	3 cut(s)	107, 152, 302
BccI	CCATC	1 cut(s)	379
BceAI	ACGGC	1 cut(s)	153
BciT130I	CCWGG	1 cut(s)	513
BclI	TGATCA	1 cut(s)	321
BcnI	CCSGG	1 cut(s)	19
BfmI	CTRYAG	1 cut(s)	561
BfuAI	ACCTGC	1 cut(s)	288
BglI	GCCNNNNNGGC	1 cut(s)	736
BisI	GCNGC	4 cut(s)	96, 141, 291, 737
BlsI	GCNGC	4 cut(s)	97, 142, 292, 738
Bme1390I	CCNGG	2 cut(s)	19, 513
Bme18I	GGWCC	1 cut(s)	578
BmgBI	CACGTC	1 cut(s)	30
BmgT120I	GGNCC	3 cut(s)	14, 15, 578
BmiI	GGNNCC	4 cut(s)	16, 17, 183, 678
BmrFI	CCNGG	2 cut(s)	19, 513
BmsI	GCATC	1 cut(s)	152
Bpu10I	CCTNAGC	1 cut(s)	210
BpuMI	CCSGG	1 cut(s)	19
BsaBI	GATNNNNATC	1 cut(s)	219
BsaJI	CCNNGG	1 cut(s)	17
BsaXI	ACNNNNNCTCC	2 cut(s)	439, 469
Bse118I	RCCGGY	1 cut(s)	50
Bse1I	ACTGG	1 cut(s)	36
Bse8I	GATNNNNATC	1 cut(s)	219
BseBI	CCWGG	1 cut(s)	513
BseDI	CCNNGG	1 cut(s)	17
BseGI	GGATG	1 cut(s)	367
BseJI	GATNNNNATC	1 cut(s)	219
BseMII	CTCAG	3 cut(s)	168, 201, 662
BseNI	ACTGG	1 cut(s)	36
BseRI	GAGGAG	2 cut(s)	194, 444
BseSI	GKGCMC	1 cut(s)	18
BseXI	GCAGC	3 cut(s)	107, 152, 302
BsgI	GTGCAG	1 cut(s)	639
BshFI	GGCC	3 cut(s)	16, 54, 359
BshNI	GGYRCC	1 cut(s)	676
BsiSI	CCGG	2 cut(s)	19, 51
BsnI	GGCC	3 cut(s)	16, 54, 359
Bsp120I	GGGCCC	1 cut(s)	14
Bsp1286I	GDGCHC	1 cut(s)	18
Bsp143I	GATC	3 cut(s)	321, 397, 597
BspACI	CCGC	1 cut(s)	736
BspANI	GGCC	3 cut(s)	16, 54, 359
BspCNI	CTCAG	3 cut(s)	169, 202, 661
BspLI	GGNNCC	4 cut(s)	16, 17, 183, 678
BspMAI	CTGCAG	1 cut(s)	565
BspMI	ACCTGC	1 cut(s)	288
BspT107I	GGYRCC	1 cut(s)	676
BsrFI	RCCGGY	1 cut(s)	50
BsrI	ACTGG	1 cut(s)	36
BssAI	RCCGGY	1 cut(s)	50
BssECI	CCNNGG	1 cut(s)	17
BssMI	GATC	3 cut(s)	321, 397, 597
BssSI	CACGAG	1 cut(s)	671
Bst2BI	CACGAG	1 cut(s)	671
Bst2UI	CCWGG	1 cut(s)	513
Bst4CI	ACNGT	1 cut(s)	46
BstAPI	GCANNNNNTGC	1 cut(s)	644
BstC8I	GCNNGC	6 cut(s)	52, 295, 502, 636, 645, 708
BstDEI	CTNAG	4 cut(s)	177, 210, 459, 648
BstF5I	GGATG	1 cut(s)	367
BstHHI	GCGC	1 cut(s)	35
BstKTI	GATC	3 cut(s)	324, 400, 600
BstMBI	GATC	3 cut(s)	321, 397, 597
BstMWI	GCNNNNNNNGC	7 cut(s)	287, 506, 515, 640, 644, 653, 736
BstNI	CCWGG	1 cut(s)	513
BstNSI	RCATGY	1 cut(s)	638
BstSCI	CCNGG	2 cut(s)	17, 511
BstSFI	CTRYAG	1 cut(s)	561
BstSLI	GKGCMC	1 cut(s)	18
BstV1I	GCAGC	3 cut(s)	107, 152, 302
BsuRI	GGCC	3 cut(s)	16, 54, 359
BtrI	CACGTC	1 cut(s)	30
BtsCI	GGATG	1 cut(s)	367
BtsI	GCAGTG	1 cut(s)	204
BtsIMutI	CAGTG	2 cut(s)	43, 204
BveI	ACCTGC	1 cut(s)	288
Cac8I	GCNNGC	6 cut(s)	52, 295, 502, 636, 645, 708
CaiI	CAGNNNCTG	1 cut(s)	644
CfoI	GCGC	1 cut(s)	35
Cfr10I	RCCGGY	1 cut(s)	50
Cfr13I	GGNCC	3 cut(s)	14, 15, 578
CviAII	CATG	3 cut(s)	478, 601, 635
DdeI	CTNAG	4 cut(s)	177, 210, 459, 648
DpnI	GATC	3 cut(s)	323, 399, 599
DpnII	GATC	3 cut(s)	321, 397, 597
EaeI	YGGCCR	1 cut(s)	52
Eco24I	GRGCYC	1 cut(s)	18
Eco47I	GGWCC	1 cut(s)	578
EcoO109I	RGGNCCY	2 cut(s)	15, 578
EcoRII	CCWGG	1 cut(s)	511
EcoT38I	GRGCYC	1 cut(s)	18
FaeI	CATG	3 cut(s)	481, 604, 638
FatI	CATG	3 cut(s)	477, 600, 634
FauNDI	CATATG	1 cut(s)	535
FbaI	TGATCA	1 cut(s)	321
Fnu4HI	GCNGC	4 cut(s)	96, 141, 291, 737
FokI	GGATG	1 cut(s)	354
FriOI	GRGCYC	1 cut(s)	18
Fsp4HI	GCNGC	4 cut(s)	96, 141, 291, 737
GlaI	GCGC	1 cut(s)	34
GluI	GCNGC	4 cut(s)	96, 141, 291, 737
HaeIII	GGCC	3 cut(s)	16, 54, 359
HapII	CCGG	2 cut(s)	19, 51
HhaI	GCGC	1 cut(s)	35
Hin1II	CATG	3 cut(s)	481, 604, 638
Hin6I	GCGC	1 cut(s)	33
HinP1I	GCGC	1 cut(s)	33
HinfI	GANTC	2 cut(s)	64, 167
HpaII	CCGG	2 cut(s)	19, 51
HphI	GGTGA	1 cut(s)	563
Hpy166II	GTNNAC	1 cut(s)	204
Hpy188I	TCNGA	4 cut(s)	225, 376, 387, 651
Hpy188III	TCNNGA	3 cut(s)	256, 338, 617
Hpy8I	GTNNAC	1 cut(s)	204
Hpy99I	CGWCG	2 cut(s)	83, 596
HpyAV	CCTTC	1 cut(s)	235
HpyCH4III	ACNGT	1 cut(s)	46
HpyCH4IV	ACGT	1 cut(s)	29
HpyCH4V	TGCA	3 cut(s)	563, 638, 656
HpyF10VI	GCNNNNNNNGC	7 cut(s)	287, 506, 515, 640, 644, 653, 736
HpyF3I	CTNAG	4 cut(s)	177, 210, 459, 648
HpySE526I	ACGT	1 cut(s)	29
Hsp92II	CATG	3 cut(s)	481, 604, 638
HspAI	GCGC	1 cut(s)	33
KroI	GCCGGC	1 cut(s)	50
KroNI	GCCGGC	1 cut(s)	52
Ksp22I	TGATCA	1 cut(s)	321
Kzo9I	GATC	3 cut(s)	321, 397, 597
LmnI	GCTCC	2 cut(s)	181, 514
Lsp1109I	GCAGC	3 cut(s)	107, 152, 302
LweI	GCATC	1 cut(s)	152
MaeII	ACGT	1 cut(s)	29
MaeIII	GTNAC	1 cut(s)	25
MalI	GATC	3 cut(s)	323, 399, 599
MboI	GATC	3 cut(s)	321, 397, 597
MboII	GAAGA	5 cut(s)	138, 141, 144, 257, 712
MhlI	GDGCHC	1 cut(s)	18
MluCI	AATT	3 cut(s)	120, 381, 428
MlyI	GAGTC	1 cut(s)	176
MnlI	CCTC	7 cut(s)	172, 205, 271, 349, 465, 596, 667
MroNI	GCCGGC	1 cut(s)	50
MroXI	GAANNNNTTC	1 cut(s)	381
MseI	TTAA	1 cut(s)	726
MspI	CCGG	2 cut(s)	19, 51
MspR9I	CCNGG	2 cut(s)	19, 513
MvaI	CCWGG	1 cut(s)	513
MwoI	GCNNNNNNNGC	7 cut(s)	287, 506, 515, 640, 644, 653, 736
NaeI	GCCGGC	1 cut(s)	52
NciI	CCSGG	1 cut(s)	19
NdeI	CATATG	1 cut(s)	535
NdeII	GATC	3 cut(s)	321, 397, 597
NgoMIV	GCCGGC	1 cut(s)	50
NlaIII	CATG	3 cut(s)	481, 604, 638
NlaIV	GGNNCC	4 cut(s)	16, 17, 183, 678
NmeAIII	GCCGAG	1 cut(s)	736
NmuCI	GTSAC	1 cut(s)	25
NspI	RCATGY	1 cut(s)	638
PaeI	GCATGC	1 cut(s)	638
PdiI	GCCGGC	1 cut(s)	52
PdmI	GAANNNNTTC	1 cut(s)	381
PfeI	GAWTC	1 cut(s)	64
PkrI	GCNGC	4 cut(s)	97, 142, 292, 738
PleI	GAGTC	1 cut(s)	175
PpsI	GAGTC	1 cut(s)	175
PpuMI	RGGWCCY	1 cut(s)	578
Psp5II	RGGWCCY	1 cut(s)	578
Psp6I	CCWGG	1 cut(s)	511
PspGI	CCWGG	1 cut(s)	511
PspN4I	GGNNCC	4 cut(s)	16, 17, 183, 678
PspOMI	GGGCCC	1 cut(s)	14
PspPI	GGNCC	3 cut(s)	14, 15, 578
PspPPI	RGGWCCY	1 cut(s)	578
PstI	CTGCAG	1 cut(s)	565
PstNI	CAGNNNCTG	1 cut(s)	644
SaqAI	TTAA	1 cut(s)	726
SatI	GCNGC	4 cut(s)	96, 141, 291, 737
Sau3AI	GATC	3 cut(s)	321, 397, 597
Sau96I	GGNCC	3 cut(s)	14, 15, 578
SchI	GAGTC	1 cut(s)	176
ScrFI	CCNGG	2 cut(s)	19, 513
SduI	GDGCHC	1 cut(s)	18
SfaNI	GCATC	1 cut(s)	152
SfcI	CTRYAG	1 cut(s)	561
SinI	GGWCC	1 cut(s)	578
SphI	GCATGC	1 cut(s)	638
Sse9I	AATT	3 cut(s)	120, 381, 428
SsiI	CCGC	1 cut(s)	736
StyD4I	CCNGG	2 cut(s)	17, 511
TaaI	ACNGT	1 cut(s)	46
TaiI	ACGT	1 cut(s)	32
TaqI	TCGA	1 cut(s)	421
TasI	AATT	3 cut(s)	120, 381, 428
TauI	GCSGC	1 cut(s)	739
TfiI	GAWTC	1 cut(s)	64
Tru1I	TTAA	1 cut(s)	726
Tru9I	TTAA	1 cut(s)	726
TscAI	CASTG	2 cut(s)	43, 211
TseFI	GTSAC	1 cut(s)	25
TseI	GCWGC	3 cut(s)	95, 140, 290
Tsp45I	GTSAC	1 cut(s)	25
TspDTI	ATGAA	4 cut(s)	245, 356, 422, 522
TspRI	CASTG	2 cut(s)	43, 211
VpaK11BI	GGWCC	1 cut(s)	578
XapI	RAATTY	1 cut(s)	120
XceI	RCATGY	1 cut(s)	638
XmnI	GAANNNNTTC	1 cut(s)	381

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.