Basic Information

Type: gene

Biological Identity

Species

rosa_multiflora

Chromosome

Rmu_sc0003649.1

Orthogroup ID

OG0001373

Physical Location & Seq

Genomic Coordinates Forward (+)

63618 .. 65881

Gene Structure 2264 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rmu_sc0003649.1_g000013.1.cds

Sequence Viewer

CDS Protein Promoter (2k)

Length: 978 bp

atgaaatgccgaggagaatcctcttcaccggtctccgattgttccaagacgaatctcccaccactcgtctctctccccaaggctgtgatcagggttcgctttcctgataatacaacattagaggccactttccatccatcagaaacacttcagagcctggttgatctcctcatgaaagtggttgctcgaccagaattatcgttccagatatatactactcctcctaagaagctgataaaagacatgacacaggacttctactctgctggcttcgctcctggtgcaattatatatttttcatatgatattccaaaaggtgatgatactgcagatgtcaagtcaggtcctttccttcacgaaaagatcatgtctttgaatggtcaggaacttgtaaaagagcttgcagagcctgttcagactgcaccggaggctatacagcaggcatcaccccctgttgtccaagagaagaagcccgccaagaaaaaccttgtctatctccctaaaggcgaacccgtaggagaatcctcttcttccagctccaatcgttccaagacgaatctctcaccactcgtctttctccctacaggcatacctctagaagcaccacggaccattctcaatcaccttcctgcgcctccagcggaagaccgtatggtcaggagagaaaaagtttttctttttcaaggatatccaagagtcgaacccaaggtgttgcatgtgttttcagatgggagttacagtcttgagacaacagcccctccctctgcatcatacgtacttgaactcattggctattccaaaggcctagtctgtttcagaaatccagacttgagacagatatgcatttgggatttggaagagcaaacagtaagggagatgattgatgatgtcaatgaagaaggagaagcctcctatggatttgggcacaaaactgggggtttgtacatgatggtcaggcttggacgcccacctcactga

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0005488 GO:0005515 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0005654 GO:0005886 GO:0008150 GO:0009893 GO:0009987 GO:0010604 GO:0016020 GO:0016043 GO:0019222 GO:0019899 GO:0022411 GO:0031323 GO:0031325 GO:0031399 GO:0031401 GO:0031974 GO:0031981 GO:0032268 GO:0032270 GO:0032501 GO:0032502 GO:0032984 GO:0035265 GO:0040007 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043233 GO:0043933 GO:0044422 GO:0044424 GO:0044428 GO:0044446 GO:0044464 GO:0048518 GO:0048522 GO:0048589 GO:0050789 GO:0050794 GO:0051117 GO:0051171 GO:0051173 GO:0051246 GO:0051247 GO:0060255 GO:0065007 GO:0070013 GO:0071840 GO:0071944 GO:0080090

KEGG Pathways

Metabolic & Signaling

ko05202 map05202

Pfam Domains

Protein Families

UBX

Protein Analysis

325

Amino Acids

35.99

Weight (kDa)

6.13

Isoelectric Point (pI)

47.95

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0001373)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT3G27310
fragaria_vesca	FvH4_2g09210 FvH4_3g43800 FvH4_6g52650 FvH4_6g52820 FvH4_6g52860
malus_domestica	MD09G1017300.v1.1 MD10G1138200.v1.1 MD17G1018100.v1.1
prunus_persica	Prupe.3G299600_v2.0.a1 Prupe.3G299600_v2.0.a1 Prupe.8G176800_v2.0.a1
pyrus_communis	pycom05g12990 pycom111g01420
rosa_chinensis	RchiOBHm_Chr2g0174181 RchiOBHm_Chr2g0174441 RchiOBHm_Chr6g0265061
rosa_laevigata	RLG00000014212 RLG00000022254 RLG00000022266 RLG00000022272
rosa_multiflora	Rmu_sc0000954.1_g000001 Rmu_sc0001533.1_g000005 Rmu_sc0003649.1_g000013 Rmu_sc0003649.1_g000018 Rmu_sc0003649.1_g000021 Rmu_ssc0000198.1_g000003 Rmu_ssc0000359.1_g000079
rosa_roxburghii	Rroxscaffold_175G00432130 Rroxscaffold_2G00078080 Rroxscaffold_2G00078110 Rroxscaffold_2G00078140 Rroxscaffold_2G00078190 Rroxscaffold_2G00078380
rosa_rugosa	Rorug02G0575700 Rorug02G0577500 Rorug06G0013300
rosa_samantha	Rh2AG655100 Rh2AG658300 Rh2AG658500 Rh2BG666300 Rh2BG669300 Rh2BG669500 Rh2CG630500 Rh2CG632400 Rh2CG632500 Rh2DG680900 Rh2DG683100 Rh2DG683200
rosa_wichuraiana	Rw2G053770 Rw2G053910 Rw2G053930 Rw6G011780

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AasI	GACNNNNNNGTC	1 cut(s)	653
AciI	CCGC	2 cut(s)	474, 641
AcuI	CTGAAG	1 cut(s)	134
AcyI	GRCGYC	1 cut(s)	964
AfaI	GTAC	2 cut(s)	777, 944
AgeI	ACCGGT	1 cut(s)	28
AgsI	TTSAA	3 cut(s)	376, 683, 782
AjnI	CCWGG	2 cut(s)	156, 277
AluBI	AGCT	3 cut(s)	232, 400, 537
AluI	AGCT	3 cut(s)	232, 400, 537
Alw26I	GTCTC	4 cut(s)	37, 73, 740, 826
AlwNI	CAGNNNCTG	2 cut(s)	157, 410
AoxI	GGCC	2 cut(s)	123, 802
ArsI	GACNNNNNNTTYG	2 cut(s)	792, 824
AsiGI	ACCGGT	1 cut(s)	28
Asp700I	GAANNNNTTC	1 cut(s)	147
AspLEI	GCGC	1 cut(s)	634
AspS9I	GGNCC	2 cut(s)	344, 609
AsuHPI	GGTGA	5 cut(s)	18, 329, 438, 555, 614
AvaII	GGWCC	2 cut(s)	344, 609
BaeGI	GKGCMC	1 cut(s)	927
BbsI	GAAGAC	1 cut(s)	651
BccI	CCATC	4 cut(s)	141, 145, 722, 943
BciT130I	CCWGG	2 cut(s)	158, 279
BclI	TGATCA	1 cut(s)	87
BcoDI	GTCTC	4 cut(s)	37, 73, 740, 826
BfaI	CTAG	2 cut(s)	596, 806
BfmI	CTRYAG	2 cut(s)	327, 582
Bme1390I	CCNGG	2 cut(s)	158, 279
Bme18I	GGWCC	2 cut(s)	344, 609
BmgT120I	GGNCC	2 cut(s)	344, 609
BmrFI	CCNGG	2 cut(s)	158, 279
BmrI	ACTGGG	1 cut(s)	942
BmsI	GCATC	2 cut(s)	452, 776
BmuI	ACTGGG	1 cut(s)	942
BpiI	GAAGAC	1 cut(s)	651
BpmI	CTGGAG	1 cut(s)	621
BpuEI	CTTGAG	2 cut(s)	764, 850
BsaAI	YACGTR	1 cut(s)	775
BsaHI	GRCGYC	1 cut(s)	964
BsaI	GGTCTC	1 cut(s)	37
BsaJI	CCNNGG	4 cut(s)	10, 78, 605, 705
BsaWI	WCCGGW	2 cut(s)	28, 424
BsaXI	ACNNNNNCTCC	6 cut(s)	205, 235, 724, 742, 754, 772
Bse118I	RCCGGY	1 cut(s)	28
Bse1I	ACTGG	1 cut(s)	937
BseBI	CCWGG	2 cut(s)	158, 279
BseDI	CCNNGG	4 cut(s)	10, 78, 605, 705
BseGI	GGATG	1 cut(s)	133
BseNI	ACTGG	1 cut(s)	937
BseRI	GAGGAG	3 cut(s)	27, 158, 210
BseSI	GKGCMC	1 cut(s)	927
BsgI	GTGCAG	1 cut(s)	405
BshFI	GGCC	2 cut(s)	125, 804
BshTI	ACCGGT	1 cut(s)	28
BsiSI	CCGG	2 cut(s)	29, 425
BsmAI	GTCTC	4 cut(s)	37, 73, 740, 826
BsmBI	CGTCTC	1 cut(s)	73
BsnI	GGCC	2 cut(s)	125, 804
Bso31I	GGTCTC	1 cut(s)	37
Bsp1286I	GDGCHC	1 cut(s)	927
Bsp1407I	TGTACA	1 cut(s)	942
Bsp143I	GATC	3 cut(s)	87, 163, 363
BspACI	CCGC	2 cut(s)	474, 641
BspANI	GGCC	2 cut(s)	125, 804
BspHI	TCATGA	1 cut(s)	171
BspMAI	CTGCAG	1 cut(s)	331
BspQI	GCTCTTC	1 cut(s)	852
BspTNI	GGTCTC	1 cut(s)	37
BsrFI	RCCGGY	1 cut(s)	28
BsrGI	TGTACA	1 cut(s)	942
BsrI	ACTGG	1 cut(s)	937
BssAI	RCCGGY	1 cut(s)	28
BssECI	CCNNGG	4 cut(s)	10, 78, 605, 705
BssMI	GATC	3 cut(s)	87, 163, 363
BssNI	GRCGYC	1 cut(s)	964
BssT1I	CCWWGG	2 cut(s)	78, 705
Bst2UI	CCWGG	2 cut(s)	158, 279
Bst4CI	ACNGT	3 cut(s)	650, 740, 868
Bst6I	CTCTTC	3 cut(s)	28, 532, 852
BstACI	GRCGYC	1 cut(s)	964
BstAUI	TGTACA	1 cut(s)	942
BstBAI	YACGTR	1 cut(s)	775
BstC8I	GCNNGC	4 cut(s)	268, 402, 441, 474
BstDEI	CTNAG	1 cut(s)	225
BstDSI	CCRYGG	1 cut(s)	605
BstF5I	GGATG	1 cut(s)	133
BstHHI	GCGC	1 cut(s)	634
BstKTI	GATC	3 cut(s)	90, 166, 366
BstMAI	GTCTC	4 cut(s)	37, 73, 740, 826
BstMBI	GATC	3 cut(s)	87, 163, 363
BstMWI	GCNNNNNNNGC	5 cut(s)	272, 281, 406, 428, 638
BstNI	CCWGG	2 cut(s)	158, 279
BstNSI	RCATGY	1 cut(s)	719
BstSCI	CCNGG	2 cut(s)	156, 277
BstSFI	CTRYAG	2 cut(s)	327, 582
BstSLI	GKGCMC	1 cut(s)	927
BstSNI	TACGTA	1 cut(s)	775
BstV2I	GAAGAC	1 cut(s)	651
BsuRI	GGCC	2 cut(s)	125, 804
BtgI	CCRYGG	1 cut(s)	605
BtsCI	GGATG	1 cut(s)	133
BtsIMutI	CAGTG	1 cut(s)	973
Cac8I	GCNNGC	4 cut(s)	268, 402, 441, 474
CaiI	CAGNNNCTG	2 cut(s)	157, 410
CciI	TCATGA	1 cut(s)	171
CfoI	GCGC	1 cut(s)	634
Cfr10I	RCCGGY	1 cut(s)	28
Cfr13I	GGNCC	2 cut(s)	344, 609
CseI	GACGC	1 cut(s)	972
Csp6I	GTAC	2 cut(s)	776, 943
CspAI	ACCGGT	1 cut(s)	28
CviAII	CATG	5 cut(s)	172, 244, 367, 716, 946
CviQI	GTAC	2 cut(s)	776, 943
DdeI	CTNAG	1 cut(s)	225
DpnI	GATC	3 cut(s)	89, 165, 365
DpnII	GATC	3 cut(s)	87, 163, 363
DrdI	GACNNNNNNGTC	1 cut(s)	653
DseDI	GACNNNNNNGTC	1 cut(s)	653
Eam1104I	CTCTTC	3 cut(s)	28, 532, 852
EarI	CTCTTC	3 cut(s)	28, 532, 852
Eco105I	TACGTA	1 cut(s)	775
Eco130I	CCWWGG	2 cut(s)	78, 705
Eco147I	AGGCCT	1 cut(s)	804
Eco31I	GGTCTC	1 cut(s)	37
Eco32I	GATATC	1 cut(s)	689
Eco47I	GGWCC	2 cut(s)	344, 609
Eco57I	CTGAAG	1 cut(s)	134
EcoO109I	RGGNCCY	1 cut(s)	344
EcoRII	CCWGG	2 cut(s)	156, 277
EcoRV	GATATC	1 cut(s)	689
EcoT14I	CCWWGG	2 cut(s)	78, 705
EcoT22I	ATGCAT	1 cut(s)	845
ErhI	CCWWGG	2 cut(s)	78, 705
Esp3I	CGTCTC	1 cut(s)	73
FaeI	CATG	5 cut(s)	175, 247, 370, 719, 949
FalI	AAGNNNNNCTT	2 cut(s)	660, 692
FatI	CATG	5 cut(s)	171, 243, 366, 715, 945
FauI	CCCGC	1 cut(s)	481
FauNDI	CATATG	1 cut(s)	301
FbaI	TGATCA	1 cut(s)	87
FokI	GGATG	1 cut(s)	120
FspBI	CTAG	2 cut(s)	596, 806
GlaI	GCGC	1 cut(s)	633
GsuI	CTGGAG	1 cut(s)	621
HaeIII	GGCC	2 cut(s)	125, 804
HapII	CCGG	2 cut(s)	29, 425
HgaI	GACGC	1 cut(s)	972
HhaI	GCGC	1 cut(s)	634
Hin1I	GRCGYC	1 cut(s)	964
Hin1II	CATG	5 cut(s)	175, 247, 370, 719, 949
Hin6I	GCGC	1 cut(s)	632
HinP1I	GCGC	1 cut(s)	632
HinfI	GANTC	5 cut(s)	17, 52, 521, 556, 696
HpaII	CCGG	2 cut(s)	29, 425
HphI	GGTGA	5 cut(s)	18, 329, 438, 555, 614
Hpy188I	TCNGA	6 cut(s)	37, 142, 153, 417, 727, 818
Hpy188III	TCNNGA	9 cut(s)	104, 172, 205, 356, 383, 596, 658, 743, 824
HpyAV	CCTTC	3 cut(s)	362, 635, 893
HpyCH4III	ACNGT	3 cut(s)	650, 740, 868
HpyCH4IV	ACGT	1 cut(s)	774
HpyCH4V	TGCA	7 cut(s)	284, 329, 404, 422, 715, 767, 843
HpyF10VI	GCNNNNNNNGC	5 cut(s)	272, 281, 406, 428, 638
HpyF3I	CTNAG	1 cut(s)	225
HpySE526I	ACGT	1 cut(s)	774
Hsp92I	GRCGYC	1 cut(s)	964
Hsp92II	CATG	5 cut(s)	175, 247, 370, 719, 949
HspAI	GCGC	1 cut(s)	632
Ksp22I	TGATCA	1 cut(s)	87
Kzo9I	GATC	3 cut(s)	87, 163, 363
LguI	GCTCTTC	1 cut(s)	852
LmnI	GCTCC	2 cut(s)	280, 542
LweI	GCATC	2 cut(s)	452, 776
MaeI	CTAG	2 cut(s)	596, 806
MaeII	ACGT	1 cut(s)	774
MaeIII	GTNAC	1 cut(s)	734
MalI	GATC	3 cut(s)	89, 165, 365
MboI	GATC	3 cut(s)	87, 163, 363
MboII	GAAGA	7 cut(s)	15, 478, 519, 522, 656, 869, 908
MhlI	GDGCHC	1 cut(s)	927
MluCI	AATT	2 cut(s)	194, 285
MlyI	GAGTC	1 cut(s)	705
Mph1103I	ATGCAT	1 cut(s)	845
MroXI	GAANNNNTTC	1 cut(s)	147
MslI	CAYNNNNRTG	1 cut(s)	176
MspA1I	CMGCKG	1 cut(s)	641
MspI	CCGG	2 cut(s)	29, 425
MspR9I	CCNGG	2 cut(s)	158, 279
MvaI	CCWGG	2 cut(s)	158, 279
MwoI	GCNNNNNNNGC	5 cut(s)	272, 281, 406, 428, 638
NdeI	CATATG	1 cut(s)	301
NdeII	GATC	3 cut(s)	87, 163, 363
NlaIII	CATG	5 cut(s)	175, 247, 370, 719, 949
NmeAIII	GCCGAG	1 cut(s)	35
NsiI	ATGCAT	1 cut(s)	845
NspI	RCATGY	1 cut(s)	719
PagI	TCATGA	1 cut(s)	171
PceI	AGGCCT	1 cut(s)	804
PciSI	GCTCTTC	1 cut(s)	852
PdmI	GAANNNNTTC	1 cut(s)	147
PfeI	GAWTC	4 cut(s)	17, 52, 521, 556
PinAI	ACCGGT	1 cut(s)	28
PleI	GAGTC	1 cut(s)	704
PpsI	GAGTC	1 cut(s)	704
Ppu21I	YACGTR	1 cut(s)	775
PpuMI	RGGWCCY	1 cut(s)	344
Psp5II	RGGWCCY	1 cut(s)	344
Psp6I	CCWGG	2 cut(s)	156, 277
PspGI	CCWGG	2 cut(s)	156, 277
PspPI	GGNCC	2 cut(s)	344, 609
PspPPI	RGGWCCY	1 cut(s)	344
PstI	CTGCAG	1 cut(s)	331
PstNI	CAGNNNCTG	2 cut(s)	157, 410
RsaI	GTAC	2 cut(s)	777, 944
RsaNI	GTAC	2 cut(s)	776, 943
RseI	CAYNNNNRTG	1 cut(s)	176
SapI	GCTCTTC	1 cut(s)	852
Sau3AI	GATC	3 cut(s)	87, 163, 363
Sau96I	GGNCC	2 cut(s)	344, 609
SchI	GAGTC	1 cut(s)	705
ScrFI	CCNGG	2 cut(s)	158, 279
SduI	GDGCHC	1 cut(s)	927
SfaNI	GCATC	2 cut(s)	452, 776
SfcI	CTRYAG	2 cut(s)	327, 582
SinI	GGWCC	2 cut(s)	344, 609
SmiMI	CAYNNNNRTG	1 cut(s)	176
SmlI	CTYRAG	2 cut(s)	743, 829
SmoI	CTYRAG	2 cut(s)	743, 829
SnaBI	TACGTA	1 cut(s)	775
Sse9I	AATT	2 cut(s)	194, 285
SseBI	AGGCCT	1 cut(s)	804
SsiI	CCGC	2 cut(s)	474, 641
SspMI	CTAG	2 cut(s)	596, 806
StuI	AGGCCT	1 cut(s)	804
StyD4I	CCNGG	2 cut(s)	156, 277
StyI	CCWWGG	2 cut(s)	78, 705
TaaI	ACNGT	3 cut(s)	650, 740, 868
TaiI	ACGT	1 cut(s)	777
TaqI	TCGA	2 cut(s)	187, 699
TasI	AATT	2 cut(s)	194, 285
TatI	WGTACW	1 cut(s)	942
TfiI	GAWTC	4 cut(s)	17, 52, 521, 556
TspDTI	ATGAA	4 cut(s)	17, 188, 288, 909
TspGWI	ACGGA	1 cut(s)	622
VpaK11BI	GGWCC	2 cut(s)	344, 609
XbaI	TCTAGA	1 cut(s)	595
XceI	RCATGY	1 cut(s)	719
XmnI	GAANNNNTTC	1 cut(s)	147
XspI	CTAG	2 cut(s)	596, 806
Zsp2I	ATGCAT	1 cut(s)	845

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.