Basic Information

Type: gene

Biological Identity

Species

rosa_chinensis

Chromosome

Orthogroup ID

OG0001373

Physical Location & Seq

Genomic Coordinates Reverse (-)

87004793 .. 87007558

Gene Structure 2766 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

PRQ54159

Sequence Viewer

CDS Protein Promoter (2k)

Length: 483 bp

ATGCCAACCTCTATTTCACAACATGCAGGATTACGGATACTACCTTTATCGAGAGAGAACAGTGGACCAGAGTTGAGGTTAGGTTGGAGGCTCTGTATGATTTTAGAACCTGCGATATTGGTCTCTCAGAATGGCATGCTTTACTGGAAAGCGGTGAGTGCAGAACGTGCTTACATTATTACATATGATTTACAGACTGAACTAGTTGGCCGCTTGGTAGCCCCTGGAGAAGATCATCTTAATAATGTGGAGTTAGTGCTGGGCCATGGGTTCAAAGGTCAACTAGCTGCGTCAGTATATGTACCTCCTGCACATCAAGAAGGACATTCTTATTTGCACATTTGGGTCCTCCTGAAAGAACTTGCCATGTACCATTGGCACAAGCTAGTGGCTTTACCTTGCCATGATTACACTAGTGATGGTGAAGTGTTTGTGACAGAGAAGTGGTCGTGCACAGGAACAAGGAGGAAGTCGTGCATATGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

No domains found.

Protein Analysis

160

Amino Acids

18.05

Weight (kDa)

6.74

Isoelectric Point (pI)

53.31

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Publication-ready

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Orthologous Genes (Group: OG0001373)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT3G27310
fragaria_vesca	FvH4_2g09210 FvH4_3g43800 FvH4_6g52650 FvH4_6g52820 FvH4_6g52860
malus_domestica	MD09G1017300.v1.1 MD10G1138200.v1.1 MD17G1018100.v1.1
prunus_persica	Prupe.3G299600_v2.0.a1 Prupe.3G299600_v2.0.a1 Prupe.8G176800_v2.0.a1
pyrus_communis	pycom05g12990 pycom111g01420
rosa_chinensis	RchiOBHm_Chr2g0174181 RchiOBHm_Chr2g0174441 RchiOBHm_Chr6g0265061
rosa_laevigata	RLG00000014212 RLG00000022254 RLG00000022266 RLG00000022272
rosa_multiflora	Rmu_sc0000954.1_g000001 Rmu_sc0001533.1_g000005 Rmu_sc0003649.1_g000013 Rmu_sc0003649.1_g000018 Rmu_sc0003649.1_g000021 Rmu_ssc0000198.1_g000003 Rmu_ssc0000359.1_g000079
rosa_roxburghii	Rroxscaffold_175G00432130 Rroxscaffold_2G00078080 Rroxscaffold_2G00078110 Rroxscaffold_2G00078140 Rroxscaffold_2G00078190 Rroxscaffold_2G00078380
rosa_rugosa	Rorug02G0575700 Rorug02G0577500 Rorug06G0013300
rosa_samantha	Rh2AG655100 Rh2AG658300 Rh2AG658500 Rh2BG666300 Rh2BG669300 Rh2BG669500 Rh2CG630500 Rh2CG632400 Rh2CG632500 Rh2DG680900 Rh2DG683100 Rh2DG683200
rosa_wichuraiana	Rw2G053770 Rw2G053910 Rw2G053930 Rw6G011780

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
Acc36I	ACCTGC	1 cut(s)	118
AciI	CCGC	2 cut(s)	152, 211
AcoI	YGGCCR	1 cut(s)	208
AfaI	GTAC	2 cut(s)	303, 371
AgsI	TTSAA	1 cut(s)	274
AhlI	ACTAGT	2 cut(s)	202, 413
AjnI	CCWGG	1 cut(s)	223
AjuI	GAANNNNNNNTTGG	1 cut(s)	30
AluBI	AGCT	2 cut(s)	287, 385
AluI	AGCT	2 cut(s)	287, 385
Alw21I	GWGCWC	1 cut(s)	455
Alw26I	GTCTC	1 cut(s)	127
Alw44I	GTGCAC	1 cut(s)	451
AoxI	GGCC	2 cut(s)	208, 262
ApaLI	GTGCAC	1 cut(s)	451
ApeKI	GCWGC	1 cut(s)	287
AspS9I	GGNCC	3 cut(s)	65, 262, 346
AsuHPI	GGTGA	2 cut(s)	166, 434
AvaII	GGWCC	2 cut(s)	65, 346
BaeGI	GKGCMC	1 cut(s)	455
Bbv12I	GWGCWC	1 cut(s)	455
BbvI	GCAGC	1 cut(s)	274
BccI	CCATC	1 cut(s)	413
BciT130I	CCWGG	1 cut(s)	225
BciVI	GTATCC	1 cut(s)	30
BcoDI	GTCTC	1 cut(s)	127
BcuI	ACTAGT	2 cut(s)	202, 413
BfaI	CTAG	4 cut(s)	203, 284, 386, 414
BfuAI	ACCTGC	1 cut(s)	118
BfuI	GTATCC	1 cut(s)	30
BisI	GCNGC	2 cut(s)	211, 288
BlsI	GCNGC	2 cut(s)	212, 289
Bme1390I	CCNGG	1 cut(s)	225
Bme18I	GGWCC	2 cut(s)	65, 346
BmgT120I	GGNCC	3 cut(s)	65, 262, 346
BmiI	GGNNCC	1 cut(s)	347
BmrFI	CCNGG	1 cut(s)	225
BpmI	CTGGAG	1 cut(s)	246
BsaI	GGTCTC	1 cut(s)	127
BsaJI	CCNNGG	2 cut(s)	223, 265
BsaXI	ACNNNNNCTCC	2 cut(s)	79, 109
Bse1I	ACTGG	1 cut(s)	149
BseBI	CCWGG	1 cut(s)	225
BseDI	CCNNGG	2 cut(s)	223, 265
BseMII	CTCAG	1 cut(s)	140
BseNI	ACTGG	1 cut(s)	149
BseSI	GKGCMC	1 cut(s)	455
BseXI	GCAGC	1 cut(s)	274
BseYI	CCCAGC	1 cut(s)	259
BsgI	GTGCAG	2 cut(s)	180, 294
BshFI	GGCC	2 cut(s)	210, 264
BsiHKAI	GWGCWC	1 cut(s)	455
BsmAI	GTCTC	1 cut(s)	127
BsnI	GGCC	2 cut(s)	210, 264
Bso31I	GGTCTC	1 cut(s)	127
Bsp1286I	GDGCHC	1 cut(s)	455
Bsp143I	GATC	1 cut(s)	232
Bsp19I	CCATGG	1 cut(s)	265
BspACI	CCGC	2 cut(s)	152, 211
BspANI	GGCC	2 cut(s)	210, 264
BspCNI	CTCAG	1 cut(s)	139
BspLI	GGNNCC	1 cut(s)	347
BspMI	ACCTGC	1 cut(s)	118
BspTNI	GGTCTC	1 cut(s)	127
BsrI	ACTGG	1 cut(s)	149
BssECI	CCNNGG	2 cut(s)	223, 265
BssMI	GATC	1 cut(s)	232
BssT1I	CCWWGG	1 cut(s)	265
Bst2UI	CCWGG	1 cut(s)	225
Bst4CI	ACNGT	1 cut(s)	62
BstAPI	GCANNNNNTGC	1 cut(s)	167
BstC8I	GCNNGC	1 cut(s)	137
BstDEI	CTNAG	1 cut(s)	126
BstDSI	CCRYGG	1 cut(s)	265
BstKTI	GATC	1 cut(s)	235
BstMAI	GTCTC	1 cut(s)	127
BstMBI	GATC	1 cut(s)	232
BstMWI	GCNNNNNNNGC	2 cut(s)	158, 167
BstNI	CCWGG	1 cut(s)	225
BstNSI	RCATGY	2 cut(s)	26, 139
BstSCI	CCNGG	1 cut(s)	223
BstSLI	GKGCMC	1 cut(s)	455
BstV1I	GCAGC	1 cut(s)	274
BsuI	GTATCC	1 cut(s)	30
BsuRI	GGCC	2 cut(s)	210, 264
BtgI	CCRYGG	1 cut(s)	265
BtsIMutI	CAGTG	1 cut(s)	67
BveI	ACCTGC	1 cut(s)	118
Cac8I	GCNNGC	1 cut(s)	137
Cfr13I	GGNCC	3 cut(s)	65, 262, 346
CseI	GACGC	1 cut(s)	279
Csp6I	GTAC	2 cut(s)	302, 370
CviAII	CATG	5 cut(s)	23, 136, 266, 367, 404
CviJI	RGCY	7 cut(s)	91, 210, 221, 264, 287, 385, 392
CviKI_1	RGCY	7 cut(s)	91, 210, 221, 264, 287, 385, 392
CviQI	GTAC	2 cut(s)	302, 370
DdeI	CTNAG	1 cut(s)	126
DpnI	GATC	1 cut(s)	234
DpnII	GATC	1 cut(s)	232
EaeI	YGGCCR	1 cut(s)	208
Eco130I	CCWWGG	1 cut(s)	265
Eco31I	GGTCTC	1 cut(s)	127
Eco47I	GGWCC	2 cut(s)	65, 346
EcoO109I	RGGNCCY	1 cut(s)	346
EcoRII	CCWGG	1 cut(s)	223
EcoT14I	CCWWGG	1 cut(s)	265
ErhI	CCWWGG	1 cut(s)	265
FaeI	CATG	5 cut(s)	26, 139, 269, 370, 407
FalI	AAGNNNNNCTT	2 cut(s)	222, 254
FatI	CATG	5 cut(s)	22, 135, 265, 366, 403
FauNDI	CATATG	2 cut(s)	184, 479
Fnu4HI	GCNGC	2 cut(s)	211, 288
Fsp4HI	GCNGC	2 cut(s)	211, 288
FspBI	CTAG	4 cut(s)	203, 284, 386, 414
GluI	GCNGC	2 cut(s)	211, 288
GsaI	CCCAGC	1 cut(s)	263
GsuI	CTGGAG	1 cut(s)	246
HaeIII	GGCC	2 cut(s)	210, 264
HgaI	GACGC	1 cut(s)	279
Hin1II	CATG	5 cut(s)	26, 139, 269, 370, 407
HincII	GTYRAC	1 cut(s)	281
HindII	GTYRAC	1 cut(s)	281
HphI	GGTGA	2 cut(s)	166, 434
Hpy166II	GTNNAC	3 cut(s)	65, 281, 453
Hpy188I	TCNGA	1 cut(s)	129
Hpy188III	TCNNGA	3 cut(s)	51, 317, 352
Hpy8I	GTNNAC	3 cut(s)	65, 281, 453
HpyAV	CCTTC	1 cut(s)	314
HpyCH4III	ACNGT	1 cut(s)	62
HpyCH4IV	ACGT	1 cut(s)	166
HpyCH4V	TGCA	6 cut(s)	26, 161, 311, 337, 453, 477
HpyF10VI	GCNNNNNNNGC	2 cut(s)	158, 167
HpyF3I	CTNAG	1 cut(s)	126
HpySE526I	ACGT	1 cut(s)	166
Hsp92II	CATG	5 cut(s)	26, 139, 269, 370, 407
Kzo9I	GATC	1 cut(s)	232
Lsp1109I	GCAGC	1 cut(s)	274
MaeI	CTAG	4 cut(s)	203, 284, 386, 414
MaeII	ACGT	1 cut(s)	166
MaeIII	GTNAC	1 cut(s)	433
MalI	GATC	1 cut(s)	234
MboI	GATC	1 cut(s)	232
MboII	GAAGA	1 cut(s)	242
MhlI	GDGCHC	1 cut(s)	455
MmeI	TCCRAC	1 cut(s)	65
MnlI	CCTC	6 cut(s)	19, 69, 81, 315, 359, 459
MseI	TTAA	1 cut(s)	240
MspR9I	CCNGG	1 cut(s)	225
MvaI	CCWGG	1 cut(s)	225
MwoI	GCNNNNNNNGC	2 cut(s)	158, 167
NcoI	CCATGG	1 cut(s)	265
NdeI	CATATG	2 cut(s)	184, 479
NdeII	GATC	1 cut(s)	232
NlaIII	CATG	5 cut(s)	26, 139, 269, 370, 407
NlaIV	GGNNCC	1 cut(s)	347
NmuCI	GTSAC	1 cut(s)	433
NspI	RCATGY	2 cut(s)	26, 139
PaeI	GCATGC	1 cut(s)	139
PkrI	GCNGC	2 cut(s)	212, 289
PpuMI	RGGWCCY	1 cut(s)	346
Psp5II	RGGWCCY	1 cut(s)	346
Psp6I	CCWGG	1 cut(s)	223
PspFI	CCCAGC	1 cut(s)	259
PspGI	CCWGG	1 cut(s)	223
PspN4I	GGNNCC	1 cut(s)	347
PspPI	GGNCC	3 cut(s)	65, 262, 346
PspPPI	RGGWCCY	1 cut(s)	346
RsaI	GTAC	2 cut(s)	303, 371
RsaNI	GTAC	2 cut(s)	302, 370
SaqAI	TTAA	1 cut(s)	240
SatI	GCNGC	2 cut(s)	211, 288
Sau3AI	GATC	1 cut(s)	232
Sau96I	GGNCC	3 cut(s)	65, 262, 346
ScrFI	CCNGG	1 cut(s)	225
SduI	GDGCHC	1 cut(s)	455
SinI	GGWCC	2 cut(s)	65, 346
SpeI	ACTAGT	2 cut(s)	202, 413
SphI	GCATGC	1 cut(s)	139
SsiI	CCGC	2 cut(s)	152, 211
SspMI	CTAG	4 cut(s)	203, 284, 386, 414
StyD4I	CCNGG	1 cut(s)	223
StyI	CCWWGG	1 cut(s)	265
TaaI	ACNGT	1 cut(s)	62
TaiI	ACGT	1 cut(s)	169
TaqI	TCGA	1 cut(s)	50
TauI	GCSGC	1 cut(s)	213
Tru1I	TTAA	1 cut(s)	240
Tru9I	TTAA	1 cut(s)	240
TscAI	CASTG	1 cut(s)	67
TseFI	GTSAC	1 cut(s)	433
TseI	GCWGC	1 cut(s)	287
Tsp45I	GTSAC	1 cut(s)	433
TspGWI	ACGGA	1 cut(s)	49
TspRI	CASTG	1 cut(s)	67
VneI	GTGCAC	1 cut(s)	451
VpaK11BI	GGWCC	2 cut(s)	65, 346
XceI	RCATGY	2 cut(s)	26, 139
XspI	CTAG	4 cut(s)	203, 284, 386, 414

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.