Rroxscaffold_2G00078080

No description available

Basic Information

Type: gene
Biological Identity
rosa_roxburghii
GWHEROQ00000002
Physical Location & Seq
Forward (+)
1497790 .. 1500530
2741 bp
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UTR
Exon/CDS
Intron
Rroxscaffold_2G00078080.1

Sequence Viewer

Length: 372 bp
ATGCCCTTGTACTCATCGGCCGAACCGTTCTCAAAGCTCAATGTTTGGACTCTTGAGGAGAACCAAGCAGAAGGTGATGGTGAATTTTGGCACAAGTTGCTCACTCTTCCACTAGATGATACTGCATATCAGATTTTTCAAATTGTTGTGAGGGGTAGTGATATTGTAAGTGAAGCGATCGTTCCCACTTTTAGCTACCGTGAAAAATCACTCTACCTGCCTTTGGTTTGTAGCACATTTCATGCCACTCCTCTGGCTCCAAAAACACTCTTCCTGCTAGAGCCTTCAATGCCAATAACTGAGAAGGAGAACAAGGAGGAGAAGGAGAACTGGGACTCCACCAGACTCAGTTTTGCAGATGACCTTGAATAG
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
No domains found.

Protein Analysis

123

Amino Acids

14.1

Weight (kDa)

4.5

Isoelectric Point (pI)

38.22

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

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Publication-ready

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
Acc36I ACCTGC 1 cut(s) 225
AcoI YGGCCR 1 cut(s) 18
AcsI RAATTY 1 cut(s) 83
AfaI GTAC 1 cut(s) 11
AfiI CCNNNNNNNGG 1 cut(s) 223
AgsI TTSAA 3 cut(s) 140, 288, 368
AloI GAACNNNNNNTCC 2 cut(s) 320, 352
AluBI AGCT 2 cut(s) 37, 195
AluI AGCT 2 cut(s) 37, 195
AoxI GGCC 1 cut(s) 18
ApoI RAATTY 1 cut(s) 83
AsuHPI GGTGA 2 cut(s) 86, 92
BccI CCATC 1 cut(s) 71
BfaI CTAG 2 cut(s) 113, 278
BfuAI ACCTGC 1 cut(s) 225
BmiI GGNNCC 1 cut(s) 258
BmrI ACTGGG 1 cut(s) 340
BmuI ACTGGG 1 cut(s) 340
BpuEI CTTGAG 1 cut(s) 74
BsaXI ACNNNNNCTCC 2 cut(s) 320, 350
Bsc4I CCNNNNNNNGG 1 cut(s) 223
Bse1I ACTGG 1 cut(s) 335
BseLI CCNNNNNNNGG 1 cut(s) 223
BseMII CTCAG 2 cut(s) 291, 361
BseNI ACTGG 1 cut(s) 335
BseRI GAGGAG 3 cut(s) 71, 240, 332
BseX3I CGGCCG 1 cut(s) 18
Bsh1285I CGRYCG 2 cut(s) 21, 180
BshFI GGCC 1 cut(s) 20
BsiEI CGRYCG 2 cut(s) 21, 180
BslFI GGGAC 1 cut(s) 347
BslI CCNNNNNNNGG 1 cut(s) 223
BsmFI GGGAC 1 cut(s) 347
BsnI GGCC 1 cut(s) 20
Bsp143I GATC 1 cut(s) 177
BspANI GGCC 1 cut(s) 20
BspCNI CTCAG 2 cut(s) 292, 360
BspLI GGNNCC 1 cut(s) 258
BspMI ACCTGC 1 cut(s) 225
BsrI ACTGG 1 cut(s) 335
BssMI GATC 1 cut(s) 177
Bst4CI ACNGT 2 cut(s) 27, 200
Bst6I CTCTTC 2 cut(s) 111, 275
BstAPI GCANNNNNTGC 1 cut(s) 97
BstDEI CTNAG 2 cut(s) 300, 347
BstKTI GATC 1 cut(s) 180
BstMBI GATC 1 cut(s) 177
BstMCI CGRYCG 2 cut(s) 21, 180
BstMWI GCNNNNNNNGC 2 cut(s) 97, 289
BstXI CCANNNNNNTGG 1 cut(s) 253
BstZI CGGCCG 1 cut(s) 18
BsuRI GGCC 1 cut(s) 20
BveI ACCTGC 1 cut(s) 225
Csp6I GTAC 1 cut(s) 10
CviAII CATG 1 cut(s) 242
CviJI RGCY 5 cut(s) 20, 37, 195, 257, 283
CviKI_1 RGCY 5 cut(s) 20, 37, 195, 257, 283
CviQI GTAC 1 cut(s) 10
DdeI CTNAG 2 cut(s) 300, 347
DpnI GATC 1 cut(s) 179
DpnII GATC 1 cut(s) 177
EaeI YGGCCR 1 cut(s) 18
EagI CGGCCG 1 cut(s) 18
Eam1104I CTCTTC 2 cut(s) 111, 275
EarI CTCTTC 2 cut(s) 111, 275
EclXI CGGCCG 1 cut(s) 18
Eco52I CGGCCG 1 cut(s) 18
FaeI CATG 1 cut(s) 245
FaiI YATR 2 cut(s) 127, 243
FaqI GGGAC 1 cut(s) 347
FatI CATG 1 cut(s) 241
FspBI CTAG 2 cut(s) 113, 278
HaeIII GGCC 1 cut(s) 20
Hin1II CATG 1 cut(s) 245
HinfI GANTC 3 cut(s) 49, 335, 345
HphI GGTGA 2 cut(s) 86, 92
Hpy188I TCNGA 1 cut(s) 132
Hpy188III TCNNGA 1 cut(s) 53
HpyAV CCTTC 4 cut(s) 65, 294, 298, 316
HpyCH4III ACNGT 2 cut(s) 27, 200
HpyCH4V TGCA 2 cut(s) 125, 356
HpyF10VI GCNNNNNNNGC 2 cut(s) 97, 289
HpyF3I CTNAG 2 cut(s) 300, 347
Hsp92II CATG 1 cut(s) 245
Kzo9I GATC 1 cut(s) 177
LmnI GCTCC 1 cut(s) 262
LpnPI CCDG 5 cut(s) 230, 239, 287, 316, 355
MaeI CTAG 2 cut(s) 113, 278
MalI GATC 1 cut(s) 179
MboI GATC 1 cut(s) 177
MboII GAAGA 2 cut(s) 98, 262
MluCI AATT 2 cut(s) 83, 141
MlyI GAGTC 3 cut(s) 43, 329, 339
MnlI CCTC 4 cut(s) 49, 144, 261, 310
MwoI GCNNNNNNNGC 2 cut(s) 97, 289
NdeII GATC 1 cut(s) 177
NlaIII CATG 1 cut(s) 245
NlaIV GGNNCC 1 cut(s) 258
PcsI WCGNNNNNNNCGW 1 cut(s) 23
Ple19I CGATCG 1 cut(s) 180
PleI GAGTC 3 cut(s) 43, 329, 339
PpsI GAGTC 3 cut(s) 43, 329, 339
PspN4I GGNNCC 1 cut(s) 258
PvuI CGATCG 1 cut(s) 180
RsaI GTAC 1 cut(s) 11
RsaNI GTAC 1 cut(s) 10
Sau3AI GATC 1 cut(s) 177
SchI GAGTC 3 cut(s) 43, 329, 339
SetI ASST 5 cut(s) 39, 76, 197, 219, 366
SmlI CTYRAG 1 cut(s) 53
SmoI CTYRAG 1 cut(s) 53
Sse9I AATT 2 cut(s) 83, 141
SspMI CTAG 2 cut(s) 113, 278
TaaI ACNGT 2 cut(s) 27, 200
TasI AATT 2 cut(s) 83, 141
TatI WGTACW 1 cut(s) 9
TspDTI ATGAA 1 cut(s) 230
XapI RAATTY 1 cut(s) 83
XspI CTAG 2 cut(s) 113, 278
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.