Rorug02G0577500

No description available

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_rugosa
GWHBQTZ00000002
OG0001373
Physical Location & Seq
Reverse (-)
70148149 .. 70149916
1768 bp
Loading structure...
UTR
Exon/CDS
Intron
Rorug02G0577500.1

Sequence Viewer

Length: 309 bp
ATGAGTGTAGCAGCGGCTTCAGCTCCGTCGCGAGCGGAGGTGCTCCACCTCTACCGCTCCTTCCTCCGCGTCGCTCGAAAATTCACAGACTACAACATCCGAGAGTACACCAAACGCAGAGCCGTCGACGCCTTTCACCACAACCGAAACCTCTCCGACCCGTCGGCGATTTCTTCCGCCTTCTCCGACGGCAAGGCTCAGCTCGAGGTCGCCACTCGCCAGGCGGTGGTTTACTCTCTCTACGCGCCCAAGCTCAAGAGCGTCATGGAGGCTCAGATTCCCATCCACAGATCGGAGTGCACTGATTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
No domains found.

Protein Analysis

102

Amino Acids

11.49

Weight (kDa)

9.66

Isoelectric Point (pI)

60.02

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
Complex1_LYR PF05347 13 - 70 2.2e-21 Complex 1 protein (LYR family)
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccB7I CCANNNNNTGG 1 cut(s) 226
AccBSI CCGCTC 2 cut(s) 35, 57
AccI GTMKAC 1 cut(s) 126
AccII CGCG 3 cut(s) 31, 69, 245
AciI CCGC 6 cut(s) 14, 35, 55, 67, 177, 224
AcsI RAATTY 1 cut(s) 80
AcyI GRCGYC 1 cut(s) 129
AfaI GTAC 1 cut(s) 107
AfiI CCNNNNNNNGG 2 cut(s) 226, 292
AjnI CCWGG 1 cut(s) 219
AluBI AGCT 3 cut(s) 23, 202, 253
AluI AGCT 3 cut(s) 23, 202, 253
Alw21I GWGCWC 2 cut(s) 45, 302
Alw44I GTGCAC 1 cut(s) 298
Ama87I CYCGRG 1 cut(s) 203
ApaLI GTGCAC 1 cut(s) 298
ApeKI GCWGC 1 cut(s) 11
ApoI RAATTY 1 cut(s) 80
AspLEI GCGC 1 cut(s) 247
AsuHPI GGTGA 1 cut(s) 128
AvaI CYCGRG 1 cut(s) 203
BaeGI GKGCMC 1 cut(s) 302
Bbv12I GWGCWC 2 cut(s) 45, 302
BbvI GCAGC 1 cut(s) 23
BccI CCATC 1 cut(s) 290
BceAI ACGGC 2 cut(s) 107, 205
BcgI CGANNNNNNTGC 2 cut(s) 106, 140
BciT130I CCWGG 1 cut(s) 221
BisI GCNGC 2 cut(s) 12, 15
BlpI GCTNAGC 1 cut(s) 198
BlsI GCNGC 2 cut(s) 13, 16
Bme1390I CCNGG 1 cut(s) 221
BmeT110I CYCGRG 1 cut(s) 203
BmrFI CCNGG 1 cut(s) 221
Bpu1102I GCTNAGC 1 cut(s) 198
BpuEI CTTGAG 1 cut(s) 239
BsaBI GATNNNNATC 1 cut(s) 281
BsaHI GRCGYC 1 cut(s) 129
Bsc4I CCNNNNNNNGG 2 cut(s) 226, 292
Bse8I GATNNNNATC 1 cut(s) 281
BseBI CCWGG 1 cut(s) 221
BseGI GGATG 2 cut(s) 96, 282
BseJI GATNNNNATC 1 cut(s) 281
BseLI CCNNNNNNNGG 2 cut(s) 226, 292
BseMII CTCAG 2 cut(s) 212, 287
BseSI GKGCMC 1 cut(s) 302
BseXI GCAGC 1 cut(s) 23
Bsh1236I CGCG 3 cut(s) 31, 69, 245
BsiHKAI GWGCWC 2 cut(s) 45, 302
BsiHKCI CYCGRG 1 cut(s) 203
BslI CCNNNNNNNGG 2 cut(s) 226, 292
BsoBI CYCGRG 1 cut(s) 203
Bsp1286I GDGCHC 2 cut(s) 45, 302
Bsp143I GATC 1 cut(s) 290
Bsp1720I GCTNAGC 1 cut(s) 198
Bsp68I TCGCGA 1 cut(s) 31
BspACI CCGC 6 cut(s) 14, 35, 55, 67, 177, 224
BspCNI CTCAG 2 cut(s) 211, 286
BspFNI CGCG 3 cut(s) 31, 69, 245
BsrBI CCGCTC 2 cut(s) 35, 57
BssMI GATC 1 cut(s) 290
BssNI GRCGYC 1 cut(s) 129
Bst2UI CCWGG 1 cut(s) 221
BstACI GRCGYC 1 cut(s) 129
BstC8I GCNNGC 1 cut(s) 33
BstDEI CTNAG 2 cut(s) 198, 273
BstF5I GGATG 2 cut(s) 96, 282
BstFNI CGCG 3 cut(s) 31, 69, 245
BstHHI GCGC 1 cut(s) 247
BstKTI GATC 1 cut(s) 293
BstMBI GATC 1 cut(s) 290
BstMWI GCNNNNNNNGC 2 cut(s) 20, 128
BstNI CCWGG 1 cut(s) 221
BstSCI CCNGG 1 cut(s) 219
BstSLI GKGCMC 1 cut(s) 302
BstUI CGCG 3 cut(s) 31, 69, 245
BstV1I GCAGC 1 cut(s) 23
BtsCI GGATG 2 cut(s) 96, 282
BtsIMutI CAGTG 1 cut(s) 300
BtuMI TCGCGA 1 cut(s) 31
Cac8I GCNNGC 1 cut(s) 33
CfoI GCGC 1 cut(s) 247
CseI GACGC 3 cut(s) 58, 137, 250
Csp6I GTAC 1 cut(s) 106
CviAII CATG 1 cut(s) 265
CviJI RGCY 7 cut(s) 17, 23, 122, 197, 202, 253, 272
CviKI_1 RGCY 7 cut(s) 17, 23, 122, 197, 202, 253, 272
CviQI GTAC 1 cut(s) 106
DdeI CTNAG 2 cut(s) 198, 273
DpnI GATC 1 cut(s) 292
DpnII GATC 1 cut(s) 290
EciI GGCGGA 1 cut(s) 166
Eco88I CYCGRG 1 cut(s) 203
EcoRII CCWGG 1 cut(s) 219
FaeI CATG 1 cut(s) 268
FaiI YATR 1 cut(s) 266
FatI CATG 1 cut(s) 264
FblI GTMKAC 1 cut(s) 126
Fnu4HI GCNGC 2 cut(s) 12, 15
FokI GGATG 2 cut(s) 83, 269
Fsp4HI GCNGC 2 cut(s) 12, 15
GlaI GCGC 1 cut(s) 246
GluI GCNGC 2 cut(s) 12, 15
HgaI GACGC 3 cut(s) 58, 137, 250
HhaI GCGC 1 cut(s) 247
Hin1I GRCGYC 1 cut(s) 129
Hin1II CATG 1 cut(s) 268
Hin6I GCGC 1 cut(s) 245
HinP1I GCGC 1 cut(s) 245
HincII GTYRAC 1 cut(s) 127
HindII GTYRAC 1 cut(s) 127
HinfI GANTC 1 cut(s) 277
HphI GGTGA 1 cut(s) 128
Hpy166II GTNNAC 4 cut(s) 108, 127, 232, 300
Hpy188I TCNGA 5 cut(s) 101, 157, 187, 276, 295
Hpy188III TCNNGA 2 cut(s) 30, 256
Hpy8I GTNNAC 4 cut(s) 108, 127, 232, 300
Hpy99I CGWCG 6 cut(s) 31, 74, 128, 131, 166, 191
HpyAV CCTTC 2 cut(s) 70, 190
HpyCH4V TGCA 1 cut(s) 300
HpyF10VI GCNNNNNNNGC 2 cut(s) 20, 128
HpyF3I CTNAG 2 cut(s) 198, 273
Hsp92I GRCGYC 1 cut(s) 129
Hsp92II CATG 1 cut(s) 268
HspAI GCGC 1 cut(s) 245
Kzo9I GATC 1 cut(s) 290
LmnI GCTCC 3 cut(s) 28, 48, 62
LpnPI CCDG 2 cut(s) 206, 233
Lsp1109I GCAGC 1 cut(s) 23
MalI GATC 1 cut(s) 292
MbiI CCGCTC 2 cut(s) 35, 57
MboI GATC 1 cut(s) 290
MboII GAAGA 1 cut(s) 165
MhlI GDGCHC 2 cut(s) 45, 302
MluCI AATT 1 cut(s) 80
MmeI TCCRAC 2 cut(s) 180, 210
MnlI CCTC 6 cut(s) 31, 59, 74, 161, 199, 262
MspA1I CMGCKG 1 cut(s) 14
MspR9I CCNGG 1 cut(s) 221
MvaI CCWGG 1 cut(s) 221
MvnI CGCG 3 cut(s) 31, 69, 245
MwoI GCNNNNNNNGC 2 cut(s) 20, 128
NdeII GATC 1 cut(s) 290
NlaIII CATG 1 cut(s) 268
NruI TCGCGA 1 cut(s) 31
PaeR7I CTCGAG 1 cut(s) 203
PfeI GAWTC 1 cut(s) 277
PflMI CCANNNNNTGG 1 cut(s) 226
PkrI GCNGC 2 cut(s) 13, 16
Psp6I CCWGG 1 cut(s) 219
PspGI CCWGG 1 cut(s) 219
PspXI VCTCGAGB 1 cut(s) 203
RruI TCGCGA 1 cut(s) 31
RsaI GTAC 1 cut(s) 107
RsaNI GTAC 1 cut(s) 106
SalI GTCGAC 1 cut(s) 125
SatI GCNGC 2 cut(s) 12, 15
Sau3AI GATC 1 cut(s) 290
ScrFI CCNGG 1 cut(s) 221
SduI GDGCHC 2 cut(s) 45, 302
SetI ASST 7 cut(s) 25, 42, 51, 153, 204, 210, 255
Sfr274I CTCGAG 1 cut(s) 203
SgrDI CGTCGACG 1 cut(s) 125
SlaI CTCGAG 1 cut(s) 203
SmlI CTYRAG 2 cut(s) 203, 254
SmoI CTYRAG 2 cut(s) 203, 254
Sse9I AATT 1 cut(s) 80
SsiI CCGC 6 cut(s) 14, 35, 55, 67, 177, 224
StyD4I CCNGG 1 cut(s) 219
TaqI TCGA 3 cut(s) 76, 126, 204
TasI AATT 1 cut(s) 80
TatI WGTACW 1 cut(s) 105
TauI GCSGC 1 cut(s) 17
TfiI GAWTC 1 cut(s) 277
TscAI CASTG 1 cut(s) 307
TseI GCWGC 1 cut(s) 11
TspGWI ACGGA 1 cut(s) 15
TspRI CASTG 1 cut(s) 307
Van91I CCANNNNNTGG 1 cut(s) 226
VneI GTGCAC 1 cut(s) 298
XapI RAATTY 1 cut(s) 80
XhoI CTCGAG 1 cut(s) 203
XmiI GTMKAC 1 cut(s) 126
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.