Basic Information

Type: gene

Biological Identity

Species

rosa_multiflora

Chromosome

Rmu_ssc0000359.1

Orthogroup ID

OG0001373

Physical Location & Seq

Genomic Coordinates Forward (+)

395159 .. 397877

Gene Structure 2719 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

Rmu_ssc0000359.1_g000079.1.cds

Sequence Viewer

CDS Protein Promoter (2k)

Length: 576 bp

atgtgcctaactacgaaagaaggtgatatggaggctgaggacgatgaaatttttgaattcaccgcagaggattattatcgggttttggactcccggaagatgagaggggcagaagaacaggtggcttgcaggtcaaggatcacgaaggcaatgattagggttcgatgtcctgataatgatgagacattgttagaggccagttttcatccatcggaaaagattcagagcttgcttgatcttctcaacaaagtggtcgctcgcccgttccagatctatactactcctcctaagaagctgataagagacatggcacaggatttttactctgctggggcactccaacgtcgttttccaaacaaaggagaacgagacttcgatctcgggttgagttgtggtcgactccggttttggttctttcgagctgagttgtggtcgacggctgtggtcggcatcaggcttggggggaggctcttcctgcataatcggcgtctggcttcggactttgaagcgggtcgtccagcttcggactttgacgagggtcgtgttttagcggcggcgtctctttcgcaggcttag

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0005488 GO:0005515 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0005654 GO:0005886 GO:0008150 GO:0009893 GO:0009987 GO:0010604 GO:0016020 GO:0016043 GO:0019222 GO:0019899 GO:0022411 GO:0031323 GO:0031325 GO:0031399 GO:0031401 GO:0031974 GO:0031981 GO:0032268 GO:0032270 GO:0032501 GO:0032502 GO:0032984 GO:0035265 GO:0040007 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043233 GO:0043933 GO:0044422 GO:0044424 GO:0044428 GO:0044446 GO:0044464 GO:0048518 GO:0048522 GO:0048589 GO:0050789 GO:0050794 GO:0051117 GO:0051171 GO:0051173 GO:0051246 GO:0051247 GO:0060255 GO:0065007 GO:0070013 GO:0071840 GO:0071944 GO:0080090

KEGG Pathways

Metabolic & Signaling

ko05202 map05202

Pfam Domains

Protein Families

UBX

Protein Analysis

191

Amino Acids

21.85

Weight (kDa)

6.19

Isoelectric Point (pI)

51.1

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0001373)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT3G27310
fragaria_vesca	FvH4_2g09210 FvH4_3g43800 FvH4_6g52650 FvH4_6g52820 FvH4_6g52860
malus_domestica	MD09G1017300.v1.1 MD10G1138200.v1.1 MD17G1018100.v1.1
prunus_persica	Prupe.3G299600_v2.0.a1 Prupe.3G299600_v2.0.a1 Prupe.8G176800_v2.0.a1
pyrus_communis	pycom05g12990 pycom111g01420
rosa_chinensis	RchiOBHm_Chr2g0174181 RchiOBHm_Chr2g0174441 RchiOBHm_Chr6g0265061
rosa_laevigata	RLG00000014212 RLG00000022254 RLG00000022266 RLG00000022272
rosa_multiflora	Rmu_sc0000954.1_g000001 Rmu_sc0001533.1_g000005 Rmu_sc0003649.1_g000013 Rmu_sc0003649.1_g000018 Rmu_sc0003649.1_g000021 Rmu_ssc0000198.1_g000003 Rmu_ssc0000359.1_g000079
rosa_roxburghii	Rroxscaffold_175G00432130 Rroxscaffold_2G00078080 Rroxscaffold_2G00078110 Rroxscaffold_2G00078140 Rroxscaffold_2G00078190 Rroxscaffold_2G00078380
rosa_rugosa	Rorug02G0575700 Rorug02G0577500 Rorug06G0013300
rosa_samantha	Rh2AG655100 Rh2AG658300 Rh2AG658500 Rh2BG666300 Rh2BG669300 Rh2BG669500 Rh2CG630500 Rh2CG632400 Rh2CG632500 Rh2DG680900 Rh2DG683100 Rh2DG683200
rosa_wichuraiana	Rw2G053770 Rw2G053910 Rw2G053930 Rw6G011780

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
Acc36I	ACCTGC	1 cut(s)	120
AccI	GTMKAC	2 cut(s)	397, 434
AciI	CCGC	4 cut(s)	63, 509, 551, 554
AclWI	GGATC	1 cut(s)	146
AcsI	RAATTY	2 cut(s)	48, 56
AcyI	GRCGYC	2 cut(s)	487, 557
AfiI	CCNNNNNNNGG	1 cut(s)	359
AgsI	TTSAA	2 cut(s)	56, 506
AjuI	GAANNNNNNNTTGG	2 cut(s)	333, 365
AluBI	AGCT	4 cut(s)	228, 295, 422, 521
AluI	AGCT	4 cut(s)	228, 295, 422, 521
Alw26I	GTCTC	4 cut(s)	176, 297, 363, 564
AlwI	GGATC	1 cut(s)	146
Ama87I	CYCGRG	1 cut(s)	380
AoxI	GGCC	1 cut(s)	195
ApoI	RAATTY	2 cut(s)	48, 56
ArsI	GACNNNNNNTTYG	2 cut(s)	390, 422
Asp700I	GAANNNNTTC	1 cut(s)	219
AsuC2I	CCSGG	1 cut(s)	94
AsuHPI	GGTGA	2 cut(s)	35, 52
AvaI	CYCGRG	1 cut(s)	380
BaeGI	GKGCMC	1 cut(s)	337
BbvCI	CCTCAGC	1 cut(s)	36
BccI	CCATC	1 cut(s)	217
BceAI	ACGGC	1 cut(s)	453
BcnI	CCSGG	1 cut(s)	94
BcoDI	GTCTC	4 cut(s)	176, 297, 363, 564
BfuAI	ACCTGC	1 cut(s)	120
BglII	AGATCT	1 cut(s)	270
BisI	GCNGC	2 cut(s)	552, 555
BlsI	GCNGC	2 cut(s)	553, 556
Bme1390I	CCNGG	1 cut(s)	94
BmeT110I	CYCGRG	1 cut(s)	380
BmrFI	CCNGG	1 cut(s)	94
BmsI	GCATC	1 cut(s)	459
BoxI	GACNNNNGTC	1 cut(s)	537
Bpu10I	CCTNAGC	1 cut(s)	36
BpuMI	CCSGG	1 cut(s)	94
BsaBI	GATNNNNATC	1 cut(s)	75
BsaHI	GRCGYC	2 cut(s)	487, 557
BsaWI	WCCGGW	1 cut(s)	402
BsaXI	ACNNNNNCTCC	2 cut(s)	268, 298
Bsc4I	CCNNNNNNNGG	1 cut(s)	359
Bse1I	ACTGG	1 cut(s)	198
Bse3DI	GCAATG	1 cut(s)	156
Bse8I	GATNNNNATC	1 cut(s)	75
BseGI	GGATG	1 cut(s)	205
BseJI	GATNNNNATC	1 cut(s)	75
BseLI	CCNNNNNNNGG	1 cut(s)	359
BseMI	GCAATG	1 cut(s)	156
BseMII	CTCAG	2 cut(s)	27, 414
BseNI	ACTGG	1 cut(s)	198
BseRI	GAGGAG	1 cut(s)	273
BseSI	GKGCMC	1 cut(s)	337
BseYI	CCCAGC	1 cut(s)	329
BshFI	GGCC	1 cut(s)	197
BsiHKCI	CYCGRG	1 cut(s)	380
BsiSI	CCGG	2 cut(s)	94, 403
BslI	CCNNNNNNNGG	1 cut(s)	359
BsmAI	GTCTC	4 cut(s)	176, 297, 363, 564
BsmBI	CGTCTC	1 cut(s)	564
BsnI	GGCC	1 cut(s)	197
BsoBI	CYCGRG	1 cut(s)	380
Bsp1286I	GDGCHC	1 cut(s)	337
Bsp143I	GATC	4 cut(s)	138, 235, 270, 376
BspACI	CCGC	4 cut(s)	63, 509, 551, 554
BspANI	GGCC	1 cut(s)	197
BspCNI	CTCAG	2 cut(s)	28, 415
BspMI	ACCTGC	1 cut(s)	120
BspPI	GGATC	1 cut(s)	146
BspQI	GCTCTTC	1 cut(s)	476
BsrDI	GCAATG	1 cut(s)	156
BsrI	ACTGG	1 cut(s)	198
BssMI	GATC	4 cut(s)	138, 235, 270, 376
BssNI	GRCGYC	2 cut(s)	487, 557
Bst6I	CTCTTC	1 cut(s)	476
BstACI	GRCGYC	2 cut(s)	487, 557
BstC8I	GCNNGC	4 cut(s)	127, 230, 259, 570
BstDEI	CTNAG	4 cut(s)	36, 288, 423, 573
BstF5I	GGATG	1 cut(s)	205
BstKTI	GATC	4 cut(s)	141, 238, 273, 379
BstMAI	GTCTC	4 cut(s)	176, 297, 363, 564
BstMBI	GATC	4 cut(s)	138, 235, 270, 376
BstMWI	GCNNNNNNNGC	2 cut(s)	475, 484
BstPAI	GACNNNNGTC	1 cut(s)	537
BstSCI	CCNGG	1 cut(s)	92
BstSLI	GKGCMC	1 cut(s)	337
BstX2I	RGATCY	1 cut(s)	270
BstYI	RGATCY	1 cut(s)	270
BsuRI	GGCC	1 cut(s)	197
BtsCI	GGATG	1 cut(s)	205
BveI	ACCTGC	1 cut(s)	120
Cac8I	GCNNGC	4 cut(s)	127, 230, 259, 570
CseI	GACGC	2 cut(s)	476, 546
CviAII	CATG	1 cut(s)	307
DdeI	CTNAG	4 cut(s)	36, 288, 423, 573
DpnI	GATC	4 cut(s)	140, 237, 272, 378
DpnII	GATC	4 cut(s)	138, 235, 270, 376
Eam1104I	CTCTTC	1 cut(s)	476
EarI	CTCTTC	1 cut(s)	476
Eco88I	CYCGRG	1 cut(s)	380
EcoRI	GAATTC	1 cut(s)	56
Esp3I	CGTCTC	1 cut(s)	564
FaeI	CATG	1 cut(s)	310
FaiI	YATR	4 cut(s)	29, 276, 308, 480
FatI	CATG	1 cut(s)	306
FauI	CCCGC	1 cut(s)	502
FblI	GTMKAC	2 cut(s)	397, 434
Fnu4HI	GCNGC	2 cut(s)	552, 555
FokI	GGATG	1 cut(s)	192
Fsp4HI	GCNGC	2 cut(s)	552, 555
GluI	GCNGC	2 cut(s)	552, 555
GsaI	CCCAGC	1 cut(s)	333
HaeIII	GGCC	1 cut(s)	197
HapII	CCGG	2 cut(s)	94, 403
HgaI	GACGC	2 cut(s)	476, 546
Hin1I	GRCGYC	2 cut(s)	487, 557
Hin1II	CATG	1 cut(s)	310
HincII	GTYRAC	2 cut(s)	398, 435
HindII	GTYRAC	2 cut(s)	398, 435
HinfI	GANTC	3 cut(s)	89, 220, 399
HpaII	CCGG	2 cut(s)	94, 403
HphI	GGTGA	2 cut(s)	35, 52
Hpy166II	GTNNAC	2 cut(s)	398, 435
Hpy188I	TCNGA	4 cut(s)	214, 225, 499, 526
Hpy188III	TCNNGA	3 cut(s)	142, 170, 268
Hpy8I	GTNNAC	2 cut(s)	398, 435
Hpy99I	CGWCG	2 cut(s)	348, 439
HpyAV	CCTTC	2 cut(s)	14, 139
HpyCH4IV	ACGT	1 cut(s)	343
HpyCH4V	TGCA	2 cut(s)	129, 478
HpyF10VI	GCNNNNNNNGC	2 cut(s)	475, 484
HpyF3I	CTNAG	4 cut(s)	36, 288, 423, 573
HpySE526I	ACGT	1 cut(s)	343
Hsp92I	GRCGYC	2 cut(s)	487, 557
Hsp92II	CATG	1 cut(s)	310
Kzo9I	GATC	4 cut(s)	138, 235, 270, 376
LguI	GCTCTTC	1 cut(s)	476
LweI	GCATC	1 cut(s)	459
MaeII	ACGT	1 cut(s)	343
MalI	GATC	4 cut(s)	140, 237, 272, 378
MboI	GATC	4 cut(s)	138, 235, 270, 376
MboII	GAAGA	4 cut(s)	109, 125, 230, 463
MflI	RGATCY	1 cut(s)	270
MhlI	GDGCHC	1 cut(s)	337
MluCI	AATT	2 cut(s)	48, 56
MlyI	GAGTC	2 cut(s)	83, 393
MmeI	TCCRAC	1 cut(s)	364
MnlI	CCTC	8 cut(s)	25, 31, 61, 98, 187, 294, 459, 529
MroXI	GAANNNNTTC	1 cut(s)	219
MspI	CCGG	2 cut(s)	94, 403
MspR9I	CCNGG	1 cut(s)	94
MwoI	GCNNNNNNNGC	2 cut(s)	475, 484
NciI	CCSGG	1 cut(s)	94
NdeII	GATC	4 cut(s)	138, 235, 270, 376
NlaIII	CATG	1 cut(s)	310
PciSI	GCTCTTC	1 cut(s)	476
PdmI	GAANNNNTTC	1 cut(s)	219
PfeI	GAWTC	1 cut(s)	220
PfoI	TCCNGGA	1 cut(s)	92
PkrI	GCNGC	2 cut(s)	553, 556
PleI	GAGTC	2 cut(s)	83, 393
PpsI	GAGTC	2 cut(s)	83, 393
PshAI	GACNNNNGTC	1 cut(s)	537
PspFI	CCCAGC	1 cut(s)	329
PsuI	RGATCY	1 cut(s)	270
SalI	GTCGAC	2 cut(s)	396, 433
SapI	GCTCTTC	1 cut(s)	476
SatI	GCNGC	2 cut(s)	552, 555
Sau3AI	GATC	4 cut(s)	138, 235, 270, 376
SchI	GAGTC	2 cut(s)	83, 393
ScrFI	CCNGG	1 cut(s)	94
SduI	GDGCHC	1 cut(s)	337
SetI	ASST	8 cut(s)	25, 123, 134, 230, 297, 346, 424, 523
SfaNI	GCATC	1 cut(s)	459
Sse9I	AATT	2 cut(s)	48, 56
SsiI	CCGC	4 cut(s)	63, 509, 551, 554
StyD4I	CCNGG	1 cut(s)	92
TaiI	ACGT	1 cut(s)	346
TaqI	TCGA	5 cut(s)	163, 375, 397, 418, 434
TasI	AATT	2 cut(s)	48, 56
TauI	GCSGC	2 cut(s)	554, 557
TfiI	GAWTC	1 cut(s)	220
TspDTI	ATGAA	2 cut(s)	60, 194
XapI	RAATTY	2 cut(s)	48, 56
XmiI	GTMKAC	2 cut(s)	397, 434
XmnI	GAANNNNTTC	1 cut(s)	219

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.