Basic Information

Type: gene

Biological Identity

Species

prunus_persica

Chromosome

Pp08

Orthogroup ID

OG0001373

Physical Location & Seq

Genomic Coordinates Reverse (-)

17873588 .. 17874061

Gene Structure 474 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Prupe.8G176800.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 474 bp

ATGGCTGATGTTTCTTCTCCAATCTCTTTCAAAAGACGGCGGCTCATCGGCAACCTTCATCACACGGTGGCCGAAGAAGCCAAGCGCAACCCTACTGTGGAGGGTGCAGATGGCTTTTATGAGTTCACCGCAGAGGATTATTACCGGCTTCGGAAGACCAAGAAGGAAGACAAGTTTTTGAAAACACAGAAGATGAGGGAGGCAGAGCAGGCAAAGTGCAGGTCAAGGTTGACCAAGGCTGTGATTAGGGTTAGGTTTCCTGATAATCACACATTGGAGGCAACTTTTCATCCGTCGGATAAAATCCAGAGCTTGGTTGATCATCTGAAGAAAGTTGCTGCTCGACCAGAATTACCCTTTTACTTATTTACTGCTCCTCCCAAGGAAGTGATCAGAGACATGTCAATGGATTTTTACTCTGCTGGGTTTGTTCCTGGGGCGAATGTGCATCTTTCATATGGTATACCTAATTAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0005488 GO:0005515 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0005654 GO:0005886 GO:0008150 GO:0009893 GO:0009987 GO:0010604 GO:0016020 GO:0016043 GO:0019222 GO:0019899 GO:0022411 GO:0031323 GO:0031325 GO:0031399 GO:0031401 GO:0031974 GO:0031981 GO:0032268 GO:0032270 GO:0032501 GO:0032502 GO:0032984 GO:0035265 GO:0040007 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043233 GO:0043933 GO:0044422 GO:0044424 GO:0044428 GO:0044446 GO:0044464 GO:0048518 GO:0048522 GO:0048589 GO:0050789 GO:0050794 GO:0051117 GO:0051171 GO:0051173 GO:0051246 GO:0051247 GO:0060255 GO:0065007 GO:0070013 GO:0071840 GO:0071944 GO:0080090

KEGG Pathways

Metabolic & Signaling

ko05202 map05202

Pfam Domains

Protein Families

UBX

Protein Analysis

158

Amino Acids

18.07

Weight (kDa)

9.54

Isoelectric Point (pI)

50.45

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

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Publication-ready

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Orthologous Genes (Group: OG0001373)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT3G27310
fragaria_vesca	FvH4_2g09210 FvH4_3g43800 FvH4_6g52650 FvH4_6g52820 FvH4_6g52860
malus_domestica	MD09G1017300.v1.1 MD10G1138200.v1.1 MD17G1018100.v1.1
prunus_persica	Prupe.3G299600_v2.0.a1 Prupe.3G299600_v2.0.a1 Prupe.8G176800_v2.0.a1
pyrus_communis	pycom05g12990 pycom111g01420
rosa_chinensis	RchiOBHm_Chr2g0174181 RchiOBHm_Chr2g0174441 RchiOBHm_Chr6g0265061
rosa_laevigata	RLG00000014212 RLG00000022254 RLG00000022266 RLG00000022272
rosa_multiflora	Rmu_sc0000954.1_g000001 Rmu_sc0001533.1_g000005 Rmu_sc0003649.1_g000013 Rmu_sc0003649.1_g000018 Rmu_sc0003649.1_g000021 Rmu_ssc0000198.1_g000003 Rmu_ssc0000359.1_g000079
rosa_roxburghii	Rroxscaffold_175G00432130 Rroxscaffold_2G00078080 Rroxscaffold_2G00078110 Rroxscaffold_2G00078140 Rroxscaffold_2G00078190 Rroxscaffold_2G00078380
rosa_rugosa	Rorug02G0575700 Rorug02G0577500 Rorug06G0013300
rosa_samantha	Rh2AG655100 Rh2AG658300 Rh2AG658500 Rh2BG666300 Rh2BG669300 Rh2BG669500 Rh2CG630500 Rh2CG632400 Rh2CG632500 Rh2DG680900 Rh2DG683100 Rh2DG683200
rosa_wichuraiana	Rw2G053770 Rw2G053910 Rw2G053930 Rw6G011780

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
Acc36I	ACCTGC	1 cut(s)	210
AccB7I	CCANNNNNTGG	1 cut(s)	313
AccI	GTMKAC	1 cut(s)	463
AciI	CCGC	2 cut(s)	40, 129
AcoI	YGGCCR	1 cut(s)	69
AcuI	CTGAAG	1 cut(s)	347
AdeI	CACNNNGTG	1 cut(s)	67
AfiI	CCNNNNNNNGG	2 cut(s)	97, 313
AflIII	ACRYGT	1 cut(s)	399
AgsI	TTSAA	2 cut(s)	31, 181
AjnI	CCWGG	1 cut(s)	433
AluBI	AGCT	1 cut(s)	312
AluI	AGCT	1 cut(s)	312
Alw26I	GTCTC	1 cut(s)	390
AoxI	GGCC	1 cut(s)	69
ApeKI	GCWGC	1 cut(s)	338
ArsI	GACNNNNNNTTYG	2 cut(s)	206, 238
AspLEI	GCGC	1 cut(s)	87
AsuHPI	GGTGA	1 cut(s)	118
BbsI	GAAGAC	2 cut(s)	161, 174
BbvI	GCAGC	1 cut(s)	325
BccI	CCATC	1 cut(s)	104
BceAI	ACGGC	1 cut(s)	53
BciT130I	CCWGG	1 cut(s)	435
BclI	TGATCA	2 cut(s)	319, 390
BcoDI	GTCTC	1 cut(s)	390
BfuAI	ACCTGC	1 cut(s)	210
BisI	GCNGC	2 cut(s)	41, 339
BlsI	GCNGC	2 cut(s)	42, 340
Bme1390I	CCNGG	1 cut(s)	435
BmrFI	CCNGG	1 cut(s)	435
BmsI	GCATC	1 cut(s)	457
BpiI	GAAGAC	2 cut(s)	161, 174
BsaJI	CCNNGG	3 cut(s)	234, 381, 434
BsaXI	ACNNNNNCTCC	2 cut(s)	361, 391
Bsc4I	CCNNNNNNNGG	2 cut(s)	97, 313
Bse118I	RCCGGY	1 cut(s)	144
BseBI	CCWGG	1 cut(s)	435
BseDI	CCNNGG	3 cut(s)	234, 381, 434
BseGI	GGATG	1 cut(s)	289
BseLI	CCNNNNNNNGG	2 cut(s)	97, 313
BseRI	GAGGAG	1 cut(s)	366
BseXI	GCAGC	1 cut(s)	325
BseYI	CCCAGC	1 cut(s)	422
BsgI	GTGCAG	2 cut(s)	126, 238
BshFI	GGCC	1 cut(s)	71
BsiSI	CCGG	1 cut(s)	145
BslI	CCNNNNNNNGG	2 cut(s)	97, 313
BsmAI	GTCTC	1 cut(s)	390
BsnI	GGCC	1 cut(s)	71
Bsp143I	GATC	2 cut(s)	319, 390
BspACI	CCGC	2 cut(s)	40, 129
BspANI	GGCC	1 cut(s)	71
BspMI	ACCTGC	1 cut(s)	210
BsrFI	RCCGGY	1 cut(s)	144
BssAI	RCCGGY	1 cut(s)	144
BssECI	CCNNGG	3 cut(s)	234, 381, 434
BssMI	GATC	2 cut(s)	319, 390
BssNAI	GTATAC	1 cut(s)	464
BssT1I	CCWWGG	2 cut(s)	234, 381
Bst1107I	GTATAC	1 cut(s)	464
Bst2UI	CCWGG	1 cut(s)	435
Bst4CI	ACNGT	2 cut(s)	67, 97
BstC8I	GCNNGC	1 cut(s)	210
BstF5I	GGATG	1 cut(s)	289
BstHHI	GCGC	1 cut(s)	87
BstKTI	GATC	2 cut(s)	322, 393
BstMAI	GTCTC	1 cut(s)	390
BstMBI	GATC	2 cut(s)	319, 390
BstMWI	GCNNNNNNNGC	2 cut(s)	77, 209
BstNI	CCWGG	1 cut(s)	435
BstNSI	RCATGY	1 cut(s)	403
BstSCI	CCNGG	1 cut(s)	433
BstV1I	GCAGC	1 cut(s)	325
BstV2I	GAAGAC	2 cut(s)	161, 174
BstZ17I	GTATAC	1 cut(s)	464
BsuRI	GGCC	1 cut(s)	71
BtsCI	GGATG	1 cut(s)	289
BveI	ACCTGC	1 cut(s)	210
Cac8I	GCNNGC	1 cut(s)	210
CfoI	GCGC	1 cut(s)	87
Cfr10I	RCCGGY	1 cut(s)	144
CviAII	CATG	1 cut(s)	400
CviJI	RGCY	8 cut(s)	5, 43, 71, 80, 114, 148, 239, 312
CviKI_1	RGCY	8 cut(s)	5, 43, 71, 80, 114, 148, 239, 312
DpnI	GATC	2 cut(s)	321, 392
DpnII	GATC	2 cut(s)	319, 390
DraIII	CACNNNGTG	1 cut(s)	67
EaeI	YGGCCR	1 cut(s)	69
Eco130I	CCWWGG	2 cut(s)	234, 381
Eco57I	CTGAAG	1 cut(s)	347
EcoRII	CCWGG	1 cut(s)	433
EcoT14I	CCWWGG	2 cut(s)	234, 381
ErhI	CCWWGG	2 cut(s)	234, 381
FaeI	CATG	1 cut(s)	403
FaiI	YATR	5 cut(s)	120, 401, 457, 459, 464
FatI	CATG	1 cut(s)	399
FauNDI	CATATG	1 cut(s)	457
FbaI	TGATCA	2 cut(s)	319, 390
FblI	GTMKAC	1 cut(s)	463
Fnu4HI	GCNGC	2 cut(s)	41, 339
FokI	GGATG	1 cut(s)	276
Fsp4HI	GCNGC	2 cut(s)	41, 339
GlaI	GCGC	1 cut(s)	86
GluI	GCNGC	2 cut(s)	41, 339
GsaI	CCCAGC	1 cut(s)	426
HaeIII	GGCC	1 cut(s)	71
HapII	CCGG	1 cut(s)	145
HhaI	GCGC	1 cut(s)	87
Hin1II	CATG	1 cut(s)	403
Hin6I	GCGC	1 cut(s)	85
HinP1I	GCGC	1 cut(s)	85
HincII	GTYRAC	1 cut(s)	231
HindII	GTYRAC	1 cut(s)	231
HpaII	CCGG	1 cut(s)	145
HphI	GGTGA	1 cut(s)	118
Hpy166II	GTNNAC	3 cut(s)	126, 231, 464
Hpy188I	TCNGA	4 cut(s)	153, 298, 327, 395
Hpy188III	TCNNGA	2 cut(s)	260, 307
Hpy8I	GTNNAC	3 cut(s)	126, 231, 464
Hpy99I	CGWCG	1 cut(s)	298
HpyAV	CCTTC	2 cut(s)	65, 157
HpyCH4III	ACNGT	2 cut(s)	67, 97
HpyCH4V	TGCA	3 cut(s)	107, 219, 448
HpyF10VI	GCNNNNNNNGC	2 cut(s)	77, 209
Hsp92II	CATG	1 cut(s)	403
HspAI	GCGC	1 cut(s)	85
Ksp22I	TGATCA	2 cut(s)	319, 390
Kzo9I	GATC	2 cut(s)	319, 390
LmnI	GCTCC	1 cut(s)	379
LpnPI	CCDG	9 cut(s)	158, 194, 205, 273, 320, 360, 408, 420, 447
Lsp1109I	GCAGC	1 cut(s)	325
LweI	GCATC	1 cut(s)	457
MalI	GATC	2 cut(s)	321, 392
MboI	GATC	2 cut(s)	319, 390
MboII	GAAGA	6 cut(s)	6, 86, 166, 179, 202, 340
MluCI	AATT	2 cut(s)	350, 469
MmeI	TCCRAC	1 cut(s)	276
MnlI	CCTC	6 cut(s)	94, 127, 189, 193, 271, 387
MslI	CAYNNNNRTG	1 cut(s)	404
MspI	CCGG	1 cut(s)	145
MspR9I	CCNGG	1 cut(s)	435
MvaI	CCWGG	1 cut(s)	435
MwoI	GCNNNNNNNGC	2 cut(s)	77, 209
NdeI	CATATG	1 cut(s)	457
NdeII	GATC	2 cut(s)	319, 390
NlaIII	CATG	1 cut(s)	403
NspI	RCATGY	1 cut(s)	403
PciI	ACATGT	1 cut(s)	399
PflMI	CCANNNNNTGG	1 cut(s)	313
PkrI	GCNGC	2 cut(s)	42, 340
PscI	ACATGT	1 cut(s)	399
Psp6I	CCWGG	1 cut(s)	433
PspFI	CCCAGC	1 cut(s)	422
PspGI	CCWGG	1 cut(s)	433
RseI	CAYNNNNRTG	1 cut(s)	404
SatI	GCNGC	2 cut(s)	41, 339
Sau3AI	GATC	2 cut(s)	319, 390
ScrFI	CCNGG	1 cut(s)	435
SetI	ASST	6 cut(s)	57, 224, 230, 257, 314, 469
SfaNI	GCATC	1 cut(s)	457
SmiMI	CAYNNNNRTG	1 cut(s)	404
Sse9I	AATT	2 cut(s)	350, 469
SsiI	CCGC	2 cut(s)	40, 129
StyD4I	CCNGG	1 cut(s)	433
StyI	CCWWGG	2 cut(s)	234, 381
TaaI	ACNGT	2 cut(s)	67, 97
TaqI	TCGA	1 cut(s)	343
TasI	AATT	2 cut(s)	350, 469
TauI	GCSGC	1 cut(s)	43
TseI	GCWGC	1 cut(s)	338
TspDTI	ATGAA	3 cut(s)	47, 278, 444
TspGWI	ACGGA	1 cut(s)	282
Van91I	CCANNNNNTGG	1 cut(s)	313
XceI	RCATGY	1 cut(s)	403
XmiI	GTMKAC	1 cut(s)	463

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.