Basic Information

Type: gene

Biological Identity

Species

fragaria_vesca

Chromosome

Fvb2

Orthogroup ID

OG0001373

Physical Location & Seq

Genomic Coordinates Reverse (-)

8140416 .. 8141077

Gene Structure 662 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

FvH4_2g09210.t1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 462 bp

ATGATGACTGATGTTTCCTCATCCACTTTATCCTTCAAAAGCAGGAGGCTCACCGCCAACCTCGGTTGTTCAGAAGCTCATGACATTTTTCAAGCTTCGCCATATTCTTCTTCACAGTACTGTGATCAGGACGATGAACTTTATGAATTCACCGCAGATGATTATTATCGGATCTTGAATAGCCGGAAGATGAGAGGCGCAGAAGAAGAACAGCAGAGAGCTTGCAGGTCGACGATCACGAAGACGGTAATTAGGGTTCGATGTCCTGATAAACAGTTAGAGCCCATGACTTTTCATCCATCGGAAAAGATTCAGAGCTTGCTAGATCGTCTCAGCAAAGAAGTCGCTCGGCCGTTCCAGATCTACACCACTCCTCCTAAGAAGCTGATAAGAGACATGGCACAGGATTTTTACTCTGCTGGGTTTGTTCCTGGTGCCATTGTTTATCTATCATGCCAGTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0005488 GO:0005515 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0005654 GO:0005886 GO:0008150 GO:0009893 GO:0009987 GO:0010604 GO:0016020 GO:0016043 GO:0019222 GO:0019899 GO:0022411 GO:0031323 GO:0031325 GO:0031399 GO:0031401 GO:0031974 GO:0031981 GO:0032268 GO:0032270 GO:0032501 GO:0032502 GO:0032984 GO:0035265 GO:0040007 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043233 GO:0043933 GO:0044422 GO:0044424 GO:0044428 GO:0044446 GO:0044464 GO:0048518 GO:0048522 GO:0048589 GO:0050789 GO:0050794 GO:0051117 GO:0051171 GO:0051173 GO:0051246 GO:0051247 GO:0060255 GO:0065007 GO:0070013 GO:0071840 GO:0071944 GO:0080090

KEGG Pathways

Metabolic & Signaling

ko05202 map05202

Pfam Domains

Protein Families

UBX

Protein Analysis

154

Amino Acids

17.59

Weight (kDa)

6.72

Isoelectric Point (pI)

54.65

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

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Publication-ready

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Orthologous Genes (Group: OG0001373)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT3G27310
fragaria_vesca	FvH4_2g09210 FvH4_3g43800 FvH4_6g52650 FvH4_6g52820 FvH4_6g52860
malus_domestica	MD09G1017300.v1.1 MD10G1138200.v1.1 MD17G1018100.v1.1
prunus_persica	Prupe.3G299600_v2.0.a1 Prupe.3G299600_v2.0.a1 Prupe.8G176800_v2.0.a1
pyrus_communis	pycom05g12990 pycom111g01420
rosa_chinensis	RchiOBHm_Chr2g0174181 RchiOBHm_Chr2g0174441 RchiOBHm_Chr6g0265061
rosa_laevigata	RLG00000014212 RLG00000022254 RLG00000022266 RLG00000022272
rosa_multiflora	Rmu_sc0000954.1_g000001 Rmu_sc0001533.1_g000005 Rmu_sc0003649.1_g000013 Rmu_sc0003649.1_g000018 Rmu_sc0003649.1_g000021 Rmu_ssc0000198.1_g000003 Rmu_ssc0000359.1_g000079
rosa_roxburghii	Rroxscaffold_175G00432130 Rroxscaffold_2G00078080 Rroxscaffold_2G00078110 Rroxscaffold_2G00078140 Rroxscaffold_2G00078190 Rroxscaffold_2G00078380
rosa_rugosa	Rorug02G0575700 Rorug02G0577500 Rorug06G0013300
rosa_samantha	Rh2AG655100 Rh2AG658300 Rh2AG658500 Rh2BG666300 Rh2BG669300 Rh2BG669500 Rh2CG630500 Rh2CG632400 Rh2CG632500 Rh2DG680900 Rh2DG683100 Rh2DG683200
rosa_wichuraiana	Rw2G053770 Rw2G053910 Rw2G053930 Rw6G011780

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
Acc36I	ACCTGC	1 cut(s)	216
AccB1I	GGYRCC	1 cut(s)	434
AccI	GTMKAC	1 cut(s)	230
AciI	CCGC	2 cut(s)	54, 153
AclWI	GGATC	1 cut(s)	179
AcoI	YGGCCR	1 cut(s)	350
AcsI	RAATTY	1 cut(s)	146
AfaI	GTAC	1 cut(s)	119
AgsI	TTSAA	3 cut(s)	37, 92, 178
AjnI	CCWGG	1 cut(s)	430
AluBI	AGCT	5 cut(s)	77, 95, 221, 318, 385
AluI	AGCT	5 cut(s)	77, 95, 221, 318, 385
Alw26I	GTCTC	2 cut(s)	335, 387
AlwI	GGATC	1 cut(s)	179
AoxI	GGCC	1 cut(s)	350
ApoI	RAATTY	1 cut(s)	146
Asp700I	GAANNNNTTC	1 cut(s)	309
AspLEI	GCGC	1 cut(s)	200
AsuHPI	GGTGA	2 cut(s)	43, 142
BanI	GGYRCC	1 cut(s)	434
BanII	GRGCYC	1 cut(s)	285
BbsI	GAAGAC	1 cut(s)	248
BccI	CCATC	1 cut(s)	307
BceAI	ACGGC	1 cut(s)	337
BcgI	CGANNNNNNTGC	2 cut(s)	325, 359
BciT130I	CCWGG	1 cut(s)	432
BclI	TGATCA	1 cut(s)	124
BcoDI	GTCTC	2 cut(s)	335, 387
BfaI	CTAG	1 cut(s)	323
BfuAI	ACCTGC	1 cut(s)	216
BglII	AGATCT	1 cut(s)	360
BmcAI	AGTACT	1 cut(s)	119
Bme1390I	CCNGG	1 cut(s)	432
BmiI	GGNNCC	1 cut(s)	436
BmrFI	CCNGG	1 cut(s)	432
BpiI	GAAGAC	1 cut(s)	248
BsaBI	GATNNNNATC	1 cut(s)	165
BsaJI	CCNNGG	1 cut(s)	61
BsaXI	ACNNNNNCTCC	2 cut(s)	358, 388
Bse1I	ACTGG	1 cut(s)	457
Bse8I	GATNNNNATC	1 cut(s)	165
BseBI	CCWGG	1 cut(s)	432
BseDI	CCNNGG	1 cut(s)	61
BseGI	GGATG	2 cut(s)	20, 295
BseJI	GATNNNNATC	1 cut(s)	165
BseMII	CTCAG	1 cut(s)	346
BseNI	ACTGG	1 cut(s)	457
BseRI	GAGGAG	1 cut(s)	363
BseX3I	CGGCCG	1 cut(s)	350
BseYI	CCCAGC	1 cut(s)	419
Bsh1285I	CGRYCG	1 cut(s)	353
BshFI	GGCC	1 cut(s)	352
BshNI	GGYRCC	1 cut(s)	434
BsiEI	CGRYCG	1 cut(s)	353
BsiSI	CCGG	1 cut(s)	184
BsmAI	GTCTC	2 cut(s)	335, 387
BsmBI	CGTCTC	1 cut(s)	335
BsnI	GGCC	1 cut(s)	352
Bsp1286I	GDGCHC	1 cut(s)	285
Bsp143I	GATC	5 cut(s)	124, 171, 234, 325, 360
BspACI	CCGC	2 cut(s)	54, 153
BspANI	GGCC	1 cut(s)	352
BspCNI	CTCAG	1 cut(s)	345
BspHI	TCATGA	1 cut(s)	79
BspLI	GGNNCC	1 cut(s)	436
BspMI	ACCTGC	1 cut(s)	216
BspPI	GGATC	1 cut(s)	179
BspT107I	GGYRCC	1 cut(s)	434
BsrI	ACTGG	1 cut(s)	457
BssECI	CCNNGG	1 cut(s)	61
BssMI	GATC	5 cut(s)	124, 171, 234, 325, 360
Bst2UI	CCWGG	1 cut(s)	432
Bst4CI	ACNGT	4 cut(s)	117, 122, 247, 276
BstC8I	GCNNGC	2 cut(s)	223, 320
BstDEI	CTNAG	2 cut(s)	332, 378
BstF5I	GGATG	2 cut(s)	20, 295
BstHHI	GCGC	1 cut(s)	200
BstKTI	GATC	5 cut(s)	127, 174, 237, 328, 363
BstMAI	GTCTC	2 cut(s)	335, 387
BstMBI	GATC	5 cut(s)	124, 171, 234, 325, 360
BstMCI	CGRYCG	1 cut(s)	353
BstNI	CCWGG	1 cut(s)	432
BstSCI	CCNGG	1 cut(s)	430
BstV2I	GAAGAC	1 cut(s)	248
BstX2I	RGATCY	2 cut(s)	171, 360
BstYI	RGATCY	2 cut(s)	171, 360
BstZI	CGGCCG	1 cut(s)	350
BsuRI	GGCC	1 cut(s)	352
BtsCI	GGATG	2 cut(s)	20, 295
BveI	ACCTGC	1 cut(s)	216
Cac8I	GCNNGC	2 cut(s)	223, 320
CciI	TCATGA	1 cut(s)	79
CfoI	GCGC	1 cut(s)	200
Csp6I	GTAC	1 cut(s)	118
CviAII	CATG	4 cut(s)	80, 286, 397, 453
CviJI	RGCY	9 cut(s)	49, 77, 95, 183, 221, 283, 318, 352, 385
CviKI_1	RGCY	9 cut(s)	49, 77, 95, 183, 221, 283, 318, 352, 385
CviQI	GTAC	1 cut(s)	118
DdeI	CTNAG	2 cut(s)	332, 378
DpnI	GATC	5 cut(s)	126, 173, 236, 327, 362
DpnII	GATC	5 cut(s)	124, 171, 234, 325, 360
EaeI	YGGCCR	1 cut(s)	350
EagI	CGGCCG	1 cut(s)	350
EclXI	CGGCCG	1 cut(s)	350
Eco24I	GRGCYC	1 cut(s)	285
Eco52I	CGGCCG	1 cut(s)	350
EcoRI	GAATTC	1 cut(s)	146
EcoRII	CCWGG	1 cut(s)	430
EcoT38I	GRGCYC	1 cut(s)	285
Esp3I	CGTCTC	1 cut(s)	335
FaeI	CATG	4 cut(s)	83, 289, 400, 456
FaiI	YATR	6 cut(s)	81, 103, 144, 287, 398, 454
FatI	CATG	4 cut(s)	79, 285, 396, 452
FbaI	TGATCA	1 cut(s)	124
FblI	GTMKAC	1 cut(s)	230
FokI	GGATG	2 cut(s)	7, 282
FriOI	GRGCYC	1 cut(s)	285
FspBI	CTAG	1 cut(s)	323
GlaI	GCGC	1 cut(s)	199
GsaI	CCCAGC	1 cut(s)	423
HaeIII	GGCC	1 cut(s)	352
HapII	CCGG	1 cut(s)	184
HhaI	GCGC	1 cut(s)	200
Hin1II	CATG	4 cut(s)	83, 289, 400, 456
Hin6I	GCGC	1 cut(s)	198
HinP1I	GCGC	1 cut(s)	198
HincII	GTYRAC	1 cut(s)	231
HindII	GTYRAC	1 cut(s)	231
HindIII	AAGCTT	1 cut(s)	93
HinfI	GANTC	1 cut(s)	310
HpaII	CCGG	1 cut(s)	184
HphI	GGTGA	2 cut(s)	43, 142
Hpy166II	GTNNAC	1 cut(s)	231
Hpy188I	TCNGA	4 cut(s)	73, 171, 304, 315
Hpy188III	TCNNGA	6 cut(s)	80, 128, 175, 238, 266, 358
Hpy8I	GTNNAC	1 cut(s)	231
Hpy99I	CGWCG	1 cut(s)	235
HpyAV	CCTTC	1 cut(s)	43
HpyCH4III	ACNGT	4 cut(s)	117, 122, 247, 276
HpyCH4V	TGCA	1 cut(s)	225
HpyF3I	CTNAG	2 cut(s)	332, 378
Hsp92II	CATG	4 cut(s)	83, 289, 400, 456
HspAI	GCGC	1 cut(s)	198
Ksp22I	TGATCA	1 cut(s)	124
Kzo9I	GATC	5 cut(s)	124, 171, 234, 325, 360
MaeI	CTAG	1 cut(s)	323
MalI	GATC	5 cut(s)	126, 173, 236, 327, 362
MboI	GATC	5 cut(s)	124, 171, 234, 325, 360
MboII	GAAGA	6 cut(s)	99, 102, 199, 215, 218, 253
MflI	RGATCY	2 cut(s)	171, 360
MhlI	GDGCHC	1 cut(s)	285
MluCI	AATT	2 cut(s)	146, 249
MnlI	CCTC	5 cut(s)	28, 39, 71, 188, 384
MroXI	GAANNNNTTC	1 cut(s)	309
MspI	CCGG	1 cut(s)	184
MspR9I	CCNGG	1 cut(s)	432
MvaI	CCWGG	1 cut(s)	432
NdeII	GATC	5 cut(s)	124, 171, 234, 325, 360
NlaIII	CATG	4 cut(s)	83, 289, 400, 456
NlaIV	GGNNCC	1 cut(s)	436
NmeAIII	GCCGAG	1 cut(s)	328
PagI	TCATGA	1 cut(s)	79
PcsI	WCGNNNNNNNCGW	1 cut(s)	236
PdmI	GAANNNNTTC	1 cut(s)	309
PfeI	GAWTC	1 cut(s)	310
Psp6I	CCWGG	1 cut(s)	430
PspFI	CCCAGC	1 cut(s)	419
PspGI	CCWGG	1 cut(s)	430
PspN4I	GGNNCC	1 cut(s)	436
PsrI	GAACNNNNNNTAC	2 cut(s)	240, 272
PsuI	RGATCY	2 cut(s)	171, 360
RsaI	GTAC	1 cut(s)	119
RsaNI	GTAC	1 cut(s)	118
SalI	GTCGAC	1 cut(s)	229
Sau3AI	GATC	5 cut(s)	124, 171, 234, 325, 360
ScaI	AGTACT	1 cut(s)	119
ScrFI	CCNGG	1 cut(s)	432
SduI	GDGCHC	1 cut(s)	285
SetI	ASST	7 cut(s)	63, 79, 97, 223, 230, 320, 387
Sse9I	AATT	2 cut(s)	146, 249
SsiI	CCGC	2 cut(s)	54, 153
SspMI	CTAG	1 cut(s)	323
StyD4I	CCNGG	1 cut(s)	430
TaaI	ACNGT	4 cut(s)	117, 122, 247, 276
TaqI	TCGA	2 cut(s)	230, 259
TasI	AATT	2 cut(s)	146, 249
TatI	WGTACW	1 cut(s)	117
TfiI	GAWTC	1 cut(s)	310
TspDTI	ATGAA	3 cut(s)	150, 159, 284
XapI	RAATTY	1 cut(s)	146
XmiI	GTMKAC	1 cut(s)	230
XmnI	GAANNNNTTC	1 cut(s)	309
XspI	CTAG	1 cut(s)	323
ZrmI	AGTACT	1 cut(s)	119

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.