Basic Information

Type: gene

Biological Identity

Species

arabidopsis_thaliana

Chromosome

Orthogroup ID

OG0000797

Physical Location & Seq

Genomic Coordinates Forward (+)

19083980 .. 19086300

Gene Structure 2321 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

AT3G51420.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1113 bp

ATGGTTCTCTTCTTCTCCACTCGTTTTCTCTTCTTCTCCATCTTCTTCCCTTGCCTCATCTCTATCACTCTCTACCAACTCGACTCATTCGAGCCAGCTTCACTTCCCGCGGACTCACTCATCACCTCTCCCACTTCAATCCCGCCACTTCTCAACGACAGATTTCTCACCGGAGCTGAGTTTATCGGCGTCGGTCTTCTCAATAACCCCGAGGATATCGCCTACCATAAGGACTCTAATCTCATCTATACTGGTTGTGTTGATGGATGGGTGAAACGAGTCAGTGTTCACGACTCAGCTAATGACTCAATCGTAGAGGATTGGGTCAATACCGGTGGTAGACCTCTCGGTATCGCTTTTGGACTTCACGGCGAAGTCATTGTCGCCGACGCAAACAAGGGATTGTTGAGTATAAGCGATGGCGGGAAGAAGACGGAATTGTTGACGGATGAAGCAGACGGTGTTAGATTTAAGCTGACGGATGCAGTTACCGTTGCTGATAACGGCGTTTTGTATTTCACAGATGCTTCTTCGAAATACGATTTCTATCAATTTATCTTTGATTTCTTGGAAGGCAAACCACACGGTCGTGTCATGAGCTTTGATCCTACCACACGTGCCACACGTGTTCTTCTCAAAGACCTCTACTTCGCTAATGGCATATCAATGTCCCCTGATCAAACACATTTCGTCTTCTGCGAAACCATCATGAGAAGATGCAGTAAGTATTATATTAGTGAGGAGCGTGTTGAGGTATTTATTCAGGGCTTACCAGGTTATCCAGATAACATTCGGTACGACGGAGATGGACATTACTGGATTGCATTGATTTCGGAAGTAACAACGTCATGGAAACTCTCGATGAAATACCTTTTCTTGAGGAAACTCATATACATGGCGGCTAAGTATGGCGTGGAACTACTGTCTATAAAGAATGCAGCCGTTTTGCAAGTGGATTTGGATGGGAATCCTATCGCAATGTACCATGATCATCCATTCTCTCACATAACAAGCGGAGTCAAGATTGGGAACCATCTCTATTTTGGGAGCCTCTTGCATTCCTACATTACTAGACTCGATCTTTTAAAGTATCCCGCACAAAAGAAGCTTTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0001101 GO:0003674 GO:0003824 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005783 GO:0006950 GO:0008150 GO:0009605 GO:0009607 GO:0009611 GO:0009615 GO:0009620 GO:0009719 GO:0009723 GO:0009725 GO:0009751 GO:0009753 GO:0010033 GO:0012505 GO:0014070 GO:0016020 GO:0016787 GO:0016788 GO:0042221 GO:0042493 GO:0043207 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044424 GO:0044444 GO:0044464 GO:0046677 GO:0050896 GO:0051704 GO:0051707 GO:1901700

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

Str_synth

Protein Analysis

370

Amino Acids

41.6

Weight (kDa)

5.65

Isoelectric Point (pI)

29.79

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
SGL	PF08450	78 - 278	7.5e-13	SMP-30/Gluconolactonase/LRE-like region
Str_synth	PF03088	161 - 248	2.8e-40	Strictosidine synthase

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0000797)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT3G51420 AT3G51430 AT3G51430 AT3G51440 AT3G51450
fragaria_vesca	FvH4_1g10570 FvH4_1g10571 FvH4_1g10572
malus_domestica	MD02G1119800.v1.1 MD02G1119900.v1.1
prunus_persica	Prupe.7G178800_v2.0.a1 Prupe.7G179100_v2.0.a1
pyrus_communis	pycom02g09330 pycom02g09340 pycom02g09350 pycom15g20840
rosa_chinensis	RchiOBHm_Chr2g0097641 RchiOBHm_Chr2g0173351 RchiOBHm_Chr3g0449291 RchiOBHm_Chr3g0492501 RchiOBHm_Chr3g0492521 RchiOBHm_Chr3g0492531
rosa_laevigata	RLG00000016730 RLG00000016731 RLG00000022762 RLG00000025842
rosa_multiflora	Rmu_co8425041.1_g000001 Rmu_sc0000971.1_g000010 Rmu_sc0000971.1_g000016 Rmu_sc0004874.1_g000001 Rmu_sc0010088.1_g000002 Rmu_sc0010088.1_g000009 Rmu_sc0016955.1_g000001 Rmu_sc0020190.1_g000005 Rmu_sc0026896.1_g000001 Rmu_ssc0000282.1_g000007
rosa_roxburghii	Rroxscaffold_2G00144630 Rroxscaffold_2G00144640 Rroxscaffold_6G00392230 Rroxscaffold_6G00427290
rosa_rugosa	Rorug02G0068000 Rorug02G0068100 Rorug02G0619400 Rorug02G0619400 Rorug03G0254300
rosa_samantha	Rh2AG114400 Rh2AG114500 Rh2AG647900 Rh2BG117100 Rh2BG117300 Rh2BG658400 Rh2CG119100 Rh2CG119300 Rh2DG118100 Rh2DG673800 Rh3AG017400 Rh3AG304700 Rh3BG017500 Rh3BG340600 Rh3CG016500 Rh3CG338000 Rh3CG338100 Rh3DG017800 Rh3DG339800
rosa_wichuraiana	Rw2G008940 Rw2G008960 Rw2G053190 Rw3G001330 Rw3G026840

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccI	GTMKAC	1 cut(s)	340
AccII	CGCG	1 cut(s)	110
AciI	CCGC	7 cut(s)	108, 110, 143, 423, 899, 1014, 1095
AclWI	GGATC	1 cut(s)	599
AcvI	CACGTG	2 cut(s)	617, 626
AcyI	GRCGYC	1 cut(s)	189
AfaI	GTAC	2 cut(s)	797, 983
AflIII	ACRYGT	3 cut(s)	614, 623, 625
AgeI	ACCGGT	1 cut(s)	332
AgsI	TTSAA	1 cut(s)	138
AjnI	CCWGG	1 cut(s)	772
AleI	CACNNNNGTG	1 cut(s)	588
AluBI	AGCT	6 cut(s)	98, 176, 299, 475, 600, 1108
AluI	AGCT	6 cut(s)	98, 176, 299, 475, 600, 1108
AlwI	GGATC	1 cut(s)	599
Ama87I	CYCGRG	1 cut(s)	209
ApeKI	GCWGC	1 cut(s)	938
ArsI	GACNNNNNNTTYG	4 cut(s)	366, 398, 632, 664
AsiGI	ACCGGT	1 cut(s)	332
AsuHPI	GGTGA	3 cut(s)	115, 160, 283
AsuII	TTCGAA	1 cut(s)	533
AvaI	CYCGRG	1 cut(s)	209
BbrPI	CACGTG	2 cut(s)	617, 626
BbsI	GAAGAC	3 cut(s)	188, 437, 685
BbvI	GCAGC	1 cut(s)	950
BccI	CCATC	8 cut(s)	47, 257, 261, 413, 713, 800, 956, 1041
BceAI	ACGGC	3 cut(s)	385, 520, 926
BcgI	CGANNNNNNTGC	2 cut(s)	813, 847
BciT130I	CCWGG	1 cut(s)	774
BciVI	GTATCC	1 cut(s)	1101
BclI	TGATCA	2 cut(s)	676, 988
BfaI	CTAG	1 cut(s)	1071
BfuI	GTATCC	1 cut(s)	1101
BisI	GCNGC	2 cut(s)	900, 939
BlsI	GCNGC	2 cut(s)	901, 940
Bme1390I	CCNGG	1 cut(s)	774
BmeT110I	CYCGRG	1 cut(s)	209
BmiI	GGNNCC	2 cut(s)	1031, 1049
BmrFI	CCNGG	1 cut(s)	774
BmsI	GCATC	3 cut(s)	472, 514, 707
BpiI	GAAGAC	3 cut(s)	188, 437, 685
Bpu14I	TTCGAA	1 cut(s)	533
BpuEI	CTTGAG	1 cut(s)	898
BsaAI	YACGTR	2 cut(s)	617, 626
BsaBI	GATNNNNATC	2 cut(s)	546, 966
BsaHI	GRCGYC	1 cut(s)	189
BsaJI	CCNNGG	2 cut(s)	108, 210
BsaWI	WCCGGW	2 cut(s)	170, 332
Bse118I	RCCGGY	1 cut(s)	332
Bse1I	ACTGG	2 cut(s)	256, 821
Bse3DI	GCAATG	1 cut(s)	984
Bse8I	GATNNNNATC	2 cut(s)	546, 966
BseBI	CCWGG	1 cut(s)	774
BseDI	CCNNGG	2 cut(s)	108, 210
BseGI	GGATG	5 cut(s)	272, 454, 487, 967, 991
BseJI	GATNNNNATC	2 cut(s)	546, 966
BseMI	GCAATG	1 cut(s)	984
BseMII	CTCAG	2 cut(s)	168, 309
BseNI	ACTGG	2 cut(s)	256, 821
BseRI	GAGGAG	1 cut(s)	755
BseXI	GCAGC	1 cut(s)	950
Bsh1236I	CGCG	1 cut(s)	110
Bsh1285I	CGRYCG	1 cut(s)	589
BshTI	ACCGGT	1 cut(s)	332
BsiEI	CGRYCG	1 cut(s)	589
BsiHKCI	CYCGRG	1 cut(s)	209
BsiSI	CCGG	2 cut(s)	171, 333
BslFI	GGGAC	1 cut(s)	655
BsmFI	GGGAC	1 cut(s)	655
BsmI	GAATGC	2 cut(s)	940, 1057
BsoBI	CYCGRG	1 cut(s)	209
Bsp119I	TTCGAA	1 cut(s)	533
Bsp143I	GATC	4 cut(s)	604, 676, 988, 1078
BspACI	CCGC	7 cut(s)	108, 110, 143, 423, 899, 1014, 1095
BspCNI	CTCAG	2 cut(s)	169, 308
BspFNI	CGCG	1 cut(s)	110
BspHI	TCATGA	2 cut(s)	594, 708
BspLI	GGNNCC	2 cut(s)	1031, 1049
BspPI	GGATC	1 cut(s)	599
BspT104I	TTCGAA	1 cut(s)	533
BsrDI	GCAATG	1 cut(s)	984
BsrFI	RCCGGY	1 cut(s)	332
BsrI	ACTGG	2 cut(s)	256, 821
BssAI	RCCGGY	1 cut(s)	332
BssECI	CCNNGG	2 cut(s)	108, 210
BssMI	GATC	4 cut(s)	604, 676, 988, 1078
BssNI	GRCGYC	1 cut(s)	189
Bst2UI	CCWGG	1 cut(s)	774
Bst4CI	ACNGT	4 cut(s)	461, 493, 587, 924
Bst6I	CTCTTC	2 cut(s)	14, 35
BstACI	GRCGYC	1 cut(s)	189
BstBAI	YACGTR	2 cut(s)	617, 626
BstBI	TTCGAA	1 cut(s)	533
BstC8I	GCNNGC	1 cut(s)	96
BstDEI	CTNAG	3 cut(s)	177, 295, 903
BstDSI	CCRYGG	1 cut(s)	108
BstF5I	GGATG	5 cut(s)	272, 454, 487, 967, 991
BstFNI	CGCG	1 cut(s)	110
BstKTI	GATC	4 cut(s)	607, 679, 991, 1081
BstMBI	GATC	4 cut(s)	604, 676, 988, 1078
BstMCI	CGRYCG	1 cut(s)	589
BstNI	CCWGG	1 cut(s)	774
BstSCI	CCNGG	1 cut(s)	772
BstUI	CGCG	1 cut(s)	110
BstV1I	GCAGC	1 cut(s)	950
BstV2I	GAAGAC	3 cut(s)	188, 437, 685
BsuI	GTATCC	1 cut(s)	1101
BtgI	CCRYGG	1 cut(s)	108
BtgZI	GCGATG	1 cut(s)	432
BtsCI	GGATG	5 cut(s)	272, 454, 487, 967, 991
BtsIMutI	CAGTG	1 cut(s)	289
Cac8I	GCNNGC	1 cut(s)	96
CciI	TCATGA	2 cut(s)	594, 708
Cfr10I	RCCGGY	1 cut(s)	332
Cfr42I	CCGCGG	1 cut(s)	111
CseI	GACGC	2 cut(s)	178, 398
CsiI	ACCWGGT	1 cut(s)	772
Csp6I	GTAC	2 cut(s)	796, 982
CspAI	ACCGGT	1 cut(s)	332
CspCI	CAANNNNNGTGG	2 cut(s)	316, 351
CviAII	CATG	5 cut(s)	595, 709, 849, 895, 986
CviQI	GTAC	2 cut(s)	796, 982
DdeI	CTNAG	3 cut(s)	177, 295, 903
DpnI	GATC	4 cut(s)	606, 678, 990, 1080
DpnII	GATC	4 cut(s)	604, 676, 988, 1078
DraI	TTTAAA	1 cut(s)	1086
Eam1104I	CTCTTC	2 cut(s)	14, 35
EarI	CTCTTC	2 cut(s)	14, 35
Eco32I	GATATC	1 cut(s)	217
Eco72I	CACGTG	2 cut(s)	617, 626
Eco88I	CYCGRG	1 cut(s)	209
EcoRII	CCWGG	1 cut(s)	772
EcoRV	GATATC	1 cut(s)	217
FaeI	CATG	5 cut(s)	598, 712, 852, 898, 989
FaqI	GGGAC	1 cut(s)	655
FatI	CATG	5 cut(s)	594, 708, 848, 894, 985
FauI	CCCGC	4 cut(s)	115, 150, 416, 1102
FbaI	TGATCA	2 cut(s)	676, 988
FblI	GTMKAC	1 cut(s)	340
Fnu4HI	GCNGC	2 cut(s)	900, 939
FokI	GGATG	5 cut(s)	279, 461, 494, 974, 978
Fsp4HI	GCNGC	2 cut(s)	900, 939
FspBI	CTAG	1 cut(s)	1071
GluI	GCNGC	2 cut(s)	900, 939
HapII	CCGG	2 cut(s)	171, 333
HgaI	GACGC	2 cut(s)	178, 398
Hin1I	GRCGYC	1 cut(s)	189
Hin1II	CATG	5 cut(s)	598, 712, 852, 898, 989
HincII	GTYRAC	1 cut(s)	444
HindII	GTYRAC	1 cut(s)	444
HindIII	AAGCTT	1 cut(s)	1106
HinfI	GANTC	9 cut(s)	83, 113, 233, 279, 293, 305, 967, 1017, 1074
HpaII	CCGG	2 cut(s)	171, 333
HphI	GGTGA	3 cut(s)	115, 160, 283
Hpy166II	GTNNAC	3 cut(s)	289, 341, 444
Hpy188I	TCNGA	1 cut(s)	835
Hpy188III	TCNNGA	7 cut(s)	290, 595, 709, 782, 859, 877, 1021
Hpy8I	GTNNAC	3 cut(s)	289, 341, 444
Hpy99I	CGWCG	3 cut(s)	194, 392, 803
HpyAV	CCTTC	1 cut(s)	566
HpyCH4III	ACNGT	4 cut(s)	461, 493, 587, 924
HpyCH4IV	ACGT	3 cut(s)	616, 625, 845
HpyCH4V	TGCA	6 cut(s)	485, 720, 824, 938, 949, 1057
HpyF3I	CTNAG	3 cut(s)	177, 295, 903
HpySE526I	ACGT	3 cut(s)	616, 625, 845
Hsp92I	GRCGYC	1 cut(s)	189
Hsp92II	CATG	5 cut(s)	598, 712, 852, 898, 989
Ksp22I	TGATCA	2 cut(s)	676, 988
KspI	CCGCGG	1 cut(s)	111
Kzo9I	GATC	4 cut(s)	604, 676, 988, 1078
LmnI	GCTCC	3 cut(s)	173, 742, 1047
Lsp1109I	GCAGC	1 cut(s)	950
LweI	GCATC	3 cut(s)	472, 514, 707
MabI	ACCWGGT	1 cut(s)	772
MaeI	CTAG	1 cut(s)	1071
MaeII	ACGT	3 cut(s)	616, 625, 845
MaeIII	GTNAC	2 cut(s)	487, 838
MalI	GATC	4 cut(s)	606, 678, 990, 1080
MboI	GATC	4 cut(s)	604, 676, 988, 1078
MluCI	AATT	2 cut(s)	437, 551
MlyI	GAGTC	8 cut(s)	77, 107, 227, 287, 288, 299, 1026, 1068
MseI	TTAA	3 cut(s)	471, 1085, 1111
MslI	CAYNNNNRTG	3 cut(s)	588, 665, 893
MspA1I	CMGCKG	1 cut(s)	110
MspI	CCGG	2 cut(s)	171, 333
MspR9I	CCNGG	1 cut(s)	774
Mva1269I	GAATGC	2 cut(s)	940, 1057
MvaI	CCWGG	1 cut(s)	774
MvnI	CGCG	1 cut(s)	110
NdeII	GATC	4 cut(s)	604, 676, 988, 1078
NlaIII	CATG	5 cut(s)	598, 712, 852, 898, 989
NlaIV	GGNNCC	2 cut(s)	1031, 1049
NspV	TTCGAA	1 cut(s)	533
OliI	CACNNNNGTG	1 cut(s)	588
PagI	TCATGA	2 cut(s)	594, 708
PcsI	WCGNNNNNNNCGW	3 cut(s)	87, 622, 696
PctI	GAATGC	2 cut(s)	940, 1057
PfeI	GAWTC	1 cut(s)	967
PinAI	ACCGGT	1 cut(s)	332
PkrI	GCNGC	2 cut(s)	901, 940
PleI	GAGTC	8 cut(s)	77, 107, 227, 287, 287, 299, 1025, 1068
PmaCI	CACGTG	2 cut(s)	617, 626
PmlI	CACGTG	2 cut(s)	617, 626
PpsI	GAGTC	8 cut(s)	77, 107, 227, 287, 287, 299, 1025, 1068
Ppu21I	YACGTR	2 cut(s)	617, 626
Psp6I	CCWGG	1 cut(s)	772
PspCI	CACGTG	2 cut(s)	617, 626
PspGI	CCWGG	1 cut(s)	772
PspN4I	GGNNCC	2 cut(s)	1031, 1049
RsaI	GTAC	2 cut(s)	797, 983
RsaNI	GTAC	2 cut(s)	796, 982
RseI	CAYNNNNRTG	3 cut(s)	588, 665, 893
SacII	CCGCGG	1 cut(s)	111
SaqAI	TTAA	3 cut(s)	471, 1085, 1111
SatI	GCNGC	2 cut(s)	900, 939
Sau3AI	GATC	4 cut(s)	604, 676, 988, 1078
SchI	GAGTC	8 cut(s)	77, 107, 227, 287, 288, 299, 1026, 1068
ScrFI	CCNGG	1 cut(s)	774
SexAI	ACCWGGT	1 cut(s)	772
SfaNI	GCATC	3 cut(s)	472, 514, 707
Sfr303I	CCGCGG	1 cut(s)	111
SfuI	TTCGAA	1 cut(s)	533
SgrBI	CCGCGG	1 cut(s)	111
SmiMI	CAYNNNNRTG	3 cut(s)	588, 665, 893
SmlI	CTYRAG	1 cut(s)	877
SmoI	CTYRAG	1 cut(s)	877
Sse9I	AATT	2 cut(s)	437, 551
SsiI	CCGC	7 cut(s)	108, 110, 143, 423, 899, 1014, 1095
SspMI	CTAG	1 cut(s)	1071
StyD4I	CCNGG	1 cut(s)	772
TaaI	ACNGT	4 cut(s)	461, 493, 587, 924
TaiI	ACGT	3 cut(s)	619, 628, 848
TaqI	TCGA	5 cut(s)	81, 90, 533, 860, 1077
TaqII	GACCGA	1 cut(s)	182
TasI	AATT	2 cut(s)	437, 551
TauI	GCSGC	1 cut(s)	902
TfiI	GAWTC	1 cut(s)	967
Tru1I	TTAA	3 cut(s)	471, 1085, 1111
Tru9I	TTAA	3 cut(s)	471, 1085, 1111
TscAI	CASTG	1 cut(s)	289
TseI	GCWGC	1 cut(s)	938
TspDTI	ATGAA	2 cut(s)	465, 878
TspGWI	ACGGA	4 cut(s)	449, 461, 494, 816
TspRI	CASTG	1 cut(s)	289
XcmI	CCANNNNNNNNNTGG	1 cut(s)	1040
XmiI	GTMKAC	1 cut(s)	340
XspI	CTAG	1 cut(s)	1071

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.