Rh2BG658400

Adipocyte plasma membrane-associated

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_samantha
Chr2B
OG0000797
Physical Location & Seq
Forward (+)
87479409 .. 87482820
3412 bp
Loading structure...
UTR
Exon/CDS
Intron
Rh2BG658400.1

Sequence Viewer

Length: 1047 bp
ATGCCCGAGTCAAACAACCATAACTCACCTTCCCCTTCAACTCAAGCTAGTAGAAGATCATCGTCATCTTCATCATGGCCTTTGAACTTTCTCTTCTTCTCAATACTGGTTCCTGTGGCGGCAGCTCTGCTAATCCTCTACCAGCTCGACTCGTTCGACCCGGCTCCTCTGCCGCTTCACGAGTTAAGCCACCGAGTCACAGCTGCCCCCGCGCGTAATGCTCACATGCTCAAAGGGTCGGAGTTTATAGGTATTGGGGCTTTAATGGCGCCGGAAGACATTGCTTATGATTCAAAGTCGGGACTCATTTACACGGGCTGTGCGGACGGGTGGGTCAAGCGAGTCACGTTGAACGAGTCGGCTGCTGACTCGGTGGTTGAGAACTGGGTTAACACCGGCGGGAGACCACTCGGACTCGCTCACGGTCATGACGGTCAGCTCTTGGTCGCGGATACAGAGAAGGGACTACTGAGTATAACTGAGGATGGAGAAGTGGAGCTGTTGACTGATGAGGCTGACGGTGTGAAATTCAAGCTTACAGATGCTGTGGATGTAGCAAAAGATGGCATGATTTACTTCACAGATGCTTCGTATGTGTACAGCTTAAAAGACTGCATCTTGGACATTCTGGAGGGCAAACCCCATGGTAGATTACTCAGCTACGATCCAACTATGAAAGAGACCAAAGTGCTAGTCCCCGACCTATACTTTGCTAATGGAGTTGCAGTCTCTCCGGATCAGAATTTTGTGATCTTCTGTGAAAGTGTCATGAGAAGATGTAAAAAGTACTACCTGCAAGGCGAGAAGAAAGGAAACGTAGAGAACTTCATTGACAACTTGCCGGGCACCCCTGATAATATTCGATATGATGGAGAAGGTCATTACTGGATTGCATTTGCTACGGTAATTCATTTTCTTTCTCTTCTAAGTTCTAAACAACGAGAGGATTGTGAAAGCTTCTTGCTAATTTGGAGAGCAATTGTGCAAATAACACCAACCCTAAAGGATCGTTTCGATTGTTGTGCTGTTATGAATGAAACAAGCTAG
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
GO:0003674 GO:0003824 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005783 GO:0012505 GO:0016020 GO:0016787 GO:0016788 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044424 GO:0044444 GO:0044464
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
Str_synth

Protein Analysis

348

Amino Acids

38.41

Weight (kDa)

4.95

Isoelectric Point (pI)

37.58

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
SSL_N PF20067 77 - 115 2e-06 Strictosidine synthase-like, N-terminal
SGL PF08450 130 - 299 7.5e-15 SMP-30/Gluconolactonase/LRE-like region
Str_synth PF03088 181 - 267 5e-34 Strictosidine synthase
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AasI GACNNNNNNGTC 1 cut(s) 332
Acc36I ACCTGC 1 cut(s) 801
AccB1I GGYRCC 2 cut(s) 268, 845
AccII CGCG 3 cut(s) 212, 214, 449
AccIII TCCGGA 1 cut(s) 733
AciI CCGC 6 cut(s) 119, 173, 210, 323, 399, 449
AclWI GGATC 3 cut(s) 659, 744, 1014
AcsI RAATTY 2 cut(s) 527, 742
AcyI GRCGYC 1 cut(s) 269
AfaI GTAC 2 cut(s) 599, 788
AgsI TTSAA 5 cut(s) 39, 85, 294, 352, 532
Alw26I GTCTC 3 cut(s) 397, 674, 733
AlwI GGATC 3 cut(s) 659, 744, 1014
AlwNI CAGNNNCTG 1 cut(s) 545
Ama87I CYCGRG 1 cut(s) 5
Aor13HI TCCGGA 1 cut(s) 733
AoxI GGCC 1 cut(s) 77
ApeKI GCWGC 3 cut(s) 122, 203, 362
ApoI RAATTY 2 cut(s) 527, 742
ArsI GACNNNNNNTTYG 4 cut(s) 678, 692, 710, 724
AspLEI GCGC 2 cut(s) 214, 271
AsuC2I CCSGG 2 cut(s) 161, 843
AsuHPI GGTGA 1 cut(s) 18
AvaI CYCGRG 1 cut(s) 5
BaeGI GKGCMC 1 cut(s) 848
BanI GGYRCC 2 cut(s) 268, 845
BauI CACGAG 1 cut(s) 179
BbsI GAAGAC 1 cut(s) 282
BbvI GCAGC 3 cut(s) 134, 190, 349
BccI CCATC 3 cut(s) 479, 557, 863
BcgI CGANNNNNNTGC 4 cut(s) 344, 378, 1004, 1038
BciVI GTATCC 1 cut(s) 445
BcnI CCSGG 2 cut(s) 161, 843
BcoDI GTCTC 3 cut(s) 397, 674, 733
BfaI CTAG 3 cut(s) 48, 692, 1045
BfoI RGCGCY 1 cut(s) 272
BfuAI ACCTGC 1 cut(s) 801
BfuI GTATCC 1 cut(s) 445
BisI GCNGC 5 cut(s) 120, 123, 173, 204, 363
BlsI GCNGC 5 cut(s) 121, 124, 174, 205, 364
BmcAI AGTACT 1 cut(s) 788
Bme1390I CCNGG 2 cut(s) 161, 843
BmeT110I CYCGRG 1 cut(s) 5
BmiI GGNNCC 4 cut(s) 111, 165, 270, 847
BmrFI CCNGG 2 cut(s) 161, 843
BmrI ACTGGG 1 cut(s) 394
BmsI GCATC 3 cut(s) 532, 574, 624
BmuI ACTGGG 1 cut(s) 394
BpiI GAAGAC 1 cut(s) 282
BpmI CTGGAG 1 cut(s) 650
BpuEI CTTGAG 1 cut(s) 27
BpuMI CCSGG 2 cut(s) 161, 843
BsaHI GRCGYC 1 cut(s) 269
BsaI GGTCTC 2 cut(s) 397, 674
BsaJI CCNNGG 1 cut(s) 643
BsaWI WCCGGW 1 cut(s) 733
BsaXI ACNNNNNCTCC 2 cut(s) 711, 741
Bse118I RCCGGY 1 cut(s) 395
Bse1I ACTGG 3 cut(s) 111, 389, 890
Bse3DI GCAATG 1 cut(s) 279
BseAI TCCGGA 1 cut(s) 733
BseDI CCNNGG 1 cut(s) 643
BseGI GGATG 2 cut(s) 490, 556
BseMI GCAATG 1 cut(s) 279
BseMII CTCAG 3 cut(s) 461, 471, 670
BseNI ACTGG 3 cut(s) 111, 389, 890
BseRI GAGGAG 1 cut(s) 156
BseSI GKGCMC 1 cut(s) 848
BseXI GCAGC 3 cut(s) 134, 190, 349
Bsh1236I CGCG 3 cut(s) 212, 214, 449
BshFI GGCC 1 cut(s) 79
BshNI GGYRCC 2 cut(s) 268, 845
BsiHKCI CYCGRG 1 cut(s) 5
BsiSI CCGG 5 cut(s) 161, 272, 396, 734, 842
BslFI GGGAC 3 cut(s) 315, 477, 680
BsmAI GTCTC 3 cut(s) 397, 674, 733
BsmFI GGGAC 3 cut(s) 315, 477, 680
BsnI GGCC 1 cut(s) 79
Bso31I GGTCTC 2 cut(s) 397, 674
BsoBI CYCGRG 1 cut(s) 5
Bsp1286I GDGCHC 1 cut(s) 848
Bsp13I TCCGGA 1 cut(s) 733
Bsp1407I TGTACA 1 cut(s) 597
Bsp143I GATC 5 cut(s) 56, 664, 736, 750, 1006
Bsp19I CCATGG 1 cut(s) 643
BspACI CCGC 6 cut(s) 119, 173, 210, 323, 399, 449
BspANI GGCC 1 cut(s) 79
BspCNI CTCAG 3 cut(s) 462, 472, 669
BspEI TCCGGA 1 cut(s) 733
BspFNI CGCG 3 cut(s) 212, 214, 449
BspHI TCATGA 2 cut(s) 427, 768
BspLI GGNNCC 4 cut(s) 111, 165, 270, 847
BspMI ACCTGC 1 cut(s) 801
BspPI GGATC 3 cut(s) 659, 744, 1014
BspT107I GGYRCC 2 cut(s) 268, 845
BspTNI GGTCTC 2 cut(s) 397, 674
BsrDI GCAATG 1 cut(s) 279
BsrFI RCCGGY 1 cut(s) 395
BsrGI TGTACA 1 cut(s) 597
BsrI ACTGG 3 cut(s) 111, 389, 890
BssAI RCCGGY 1 cut(s) 395
BssECI CCNNGG 1 cut(s) 643
BssMI GATC 5 cut(s) 56, 664, 736, 750, 1006
BssNI GRCGYC 1 cut(s) 269
BssSI CACGAG 1 cut(s) 179
BssT1I CCWWGG 1 cut(s) 643
Bst2BI CACGAG 1 cut(s) 179
Bst4CI ACNGT 4 cut(s) 425, 434, 521, 904
Bst6I CTCTTC 2 cut(s) 98, 927
BstACI GRCGYC 1 cut(s) 269
BstAUI TGTACA 1 cut(s) 597
BstDEI CTNAG 4 cut(s) 470, 480, 656, 926
BstDSI CCRYGG 1 cut(s) 643
BstF5I GGATG 2 cut(s) 490, 556
BstFNI CGCG 3 cut(s) 212, 214, 449
BstH2I RGCGCY 1 cut(s) 272
BstHHI GCGC 2 cut(s) 214, 271
BstKTI GATC 5 cut(s) 59, 667, 739, 753, 1009
BstMAI GTCTC 3 cut(s) 397, 674, 733
BstMBI GATC 5 cut(s) 56, 664, 736, 750, 1006
BstMWI GCNNNNNNNGC 3 cut(s) 209, 218, 266
BstNSI RCATGY 1 cut(s) 229
BstSCI CCNGG 2 cut(s) 159, 841
BstSLI GKGCMC 1 cut(s) 848
BstUI CGCG 3 cut(s) 212, 214, 449
BstV1I GCAGC 3 cut(s) 134, 190, 349
BstV2I GAAGAC 1 cut(s) 282
BsuI GTATCC 1 cut(s) 445
BsuRI GGCC 1 cut(s) 79
BtgI CCRYGG 1 cut(s) 643
BtsCI GGATG 2 cut(s) 490, 556
BveI ACCTGC 1 cut(s) 801
CaiI CAGNNNCTG 1 cut(s) 545
CciI TCATGA 2 cut(s) 427, 768
CfoI GCGC 2 cut(s) 214, 271
Cfr10I RCCGGY 1 cut(s) 395
Csp6I GTAC 2 cut(s) 598, 787
CviAII CATG 6 cut(s) 75, 226, 428, 568, 644, 769
CviQI GTAC 2 cut(s) 598, 787
DdeI CTNAG 4 cut(s) 470, 480, 656, 926
DinI GGCGCC 1 cut(s) 270
DpnI GATC 5 cut(s) 58, 666, 738, 752, 1008
DpnII GATC 5 cut(s) 56, 664, 736, 750, 1006
DrdI GACNNNNNNGTC 1 cut(s) 332
DseDI GACNNNNNNGTC 1 cut(s) 332
Eam1104I CTCTTC 2 cut(s) 98, 927
EarI CTCTTC 2 cut(s) 98, 927
Eco130I CCWWGG 1 cut(s) 643
Eco31I GGTCTC 2 cut(s) 397, 674
Eco88I CYCGRG 1 cut(s) 5
EcoT14I CCWWGG 1 cut(s) 643
EgeI GGCGCC 1 cut(s) 270
EheI GGCGCC 1 cut(s) 270
ErhI CCWWGG 1 cut(s) 643
FaeI CATG 6 cut(s) 78, 229, 431, 571, 647, 772
FaqI GGGAC 3 cut(s) 315, 477, 680
FatI CATG 6 cut(s) 74, 225, 427, 567, 643, 768
FauI CCCGC 2 cut(s) 217, 392
Fnu4HI GCNGC 5 cut(s) 120, 123, 173, 204, 363
FokI GGATG 2 cut(s) 497, 563
Fsp4HI GCNGC 5 cut(s) 120, 123, 173, 204, 363
FspBI CTAG 3 cut(s) 48, 692, 1045
GlaI GCGC 2 cut(s) 213, 270
GluI GCNGC 5 cut(s) 120, 123, 173, 204, 363
GsuI CTGGAG 1 cut(s) 650
HaeII RGCGCY 1 cut(s) 272
HaeIII GGCC 1 cut(s) 79
HapII CCGG 5 cut(s) 161, 272, 396, 734, 842
HhaI GCGC 2 cut(s) 214, 271
Hin1I GRCGYC 1 cut(s) 269
Hin1II CATG 6 cut(s) 78, 229, 431, 571, 647, 772
Hin6I GCGC 2 cut(s) 212, 269
HinP1I GCGC 2 cut(s) 212, 269
HincII GTYRAC 2 cut(s) 391, 504
HindII GTYRAC 2 cut(s) 391, 504
HindIII AAGCTT 2 cut(s) 533, 955
HinfI GANTC 9 cut(s) 8, 149, 195, 290, 303, 342, 356, 368, 414
HpaI GTTAAC 1 cut(s) 391
HpaII CCGG 5 cut(s) 161, 272, 396, 734, 842
HphI GGTGA 1 cut(s) 18
Hpy166II GTNNAC 3 cut(s) 391, 504, 598
Hpy188I TCNGA 3 cut(s) 241, 413, 741
Hpy188III TCNNGA 6 cut(s) 179, 300, 428, 629, 734, 769
Hpy8I GTNNAC 3 cut(s) 391, 504, 598
HpyAV CCTTC 4 cut(s) 39, 45, 454, 869
HpyCH4III ACNGT 4 cut(s) 425, 434, 521, 904
HpyCH4IV ACGT 2 cut(s) 347, 816
HpyCH4V TGCA 5 cut(s) 615, 725, 796, 893, 985
HpyF10VI GCNNNNNNNGC 3 cut(s) 209, 218, 266
HpyF3I CTNAG 4 cut(s) 470, 480, 656, 926
HpySE526I ACGT 2 cut(s) 347, 816
Hsp92I GRCGYC 1 cut(s) 269
Hsp92II CATG 6 cut(s) 78, 229, 431, 571, 647, 772
HspAI GCGC 2 cut(s) 212, 269
KasI GGCGCC 1 cut(s) 268
Kpn2I TCCGGA 1 cut(s) 733
KspAI GTTAAC 1 cut(s) 391
Kzo9I GATC 5 cut(s) 56, 664, 736, 750, 1006
LmnI GCTCC 2 cut(s) 169, 496
Lsp1109I GCAGC 3 cut(s) 134, 190, 349
LweI GCATC 3 cut(s) 532, 574, 624
MaeI CTAG 3 cut(s) 48, 692, 1045
MaeII ACGT 2 cut(s) 347, 816
MaeIII GTNAC 2 cut(s) 196, 343
MalI GATC 5 cut(s) 58, 666, 738, 752, 1008
MboI GATC 5 cut(s) 56, 664, 736, 750, 1006
MboII GAAGA 9 cut(s) 60, 66, 85, 88, 287, 745, 786, 817, 914
MfeI CAATTG 1 cut(s) 978
MhlI GDGCHC 1 cut(s) 848
MluCI AATT 5 cut(s) 527, 742, 906, 966, 978
Mly113I GGCGCC 1 cut(s) 269
MlyI GAGTC 8 cut(s) 17, 143, 204, 297, 351, 362, 365, 408
MmeI TCCRAC 2 cut(s) 219, 692
MnlI CCTC 6 cut(s) 146, 177, 475, 505, 625, 937
MroI TCCGGA 1 cut(s) 733
MseI TTAA 4 cut(s) 185, 263, 390, 605
MslI CAYNNNNRTG 1 cut(s) 426
MspA1I CMGCKG 1 cut(s) 203
MspI CCGG 5 cut(s) 161, 272, 396, 734, 842
MspR9I CCNGG 2 cut(s) 161, 843
MunI CAATTG 1 cut(s) 978
MvnI CGCG 3 cut(s) 212, 214, 449
MwoI GCNNNNNNNGC 3 cut(s) 209, 218, 266
NarI GGCGCC 1 cut(s) 269
NciI CCSGG 2 cut(s) 161, 843
NcoI CCATGG 1 cut(s) 643
NdeII GATC 5 cut(s) 56, 664, 736, 750, 1006
NlaIII CATG 6 cut(s) 78, 229, 431, 571, 647, 772
NlaIV GGNNCC 4 cut(s) 111, 165, 270, 847
NmuCI GTSAC 2 cut(s) 196, 343
NspI RCATGY 1 cut(s) 229
PagI TCATGA 2 cut(s) 427, 768
PcsI WCGNNNNNNNCGW 1 cut(s) 153
PfeI GAWTC 1 cut(s) 290
PkrI GCNGC 5 cut(s) 121, 124, 174, 205, 364
PleI GAGTC 8 cut(s) 16, 143, 203, 297, 350, 362, 364, 408
PluTI GGCGCC 1 cut(s) 272
PpsI GAGTC 8 cut(s) 16, 143, 203, 297, 350, 362, 364, 408
PspN4I GGNNCC 4 cut(s) 111, 165, 270, 847
PstNI CAGNNNCTG 1 cut(s) 545
PvuII CAGCTG 1 cut(s) 203
RsaI GTAC 2 cut(s) 599, 788
RsaNI GTAC 2 cut(s) 598, 787
RseI CAYNNNNRTG 1 cut(s) 426
SaqAI TTAA 4 cut(s) 185, 263, 390, 605
SatI GCNGC 5 cut(s) 120, 123, 173, 204, 363
Sau3AI GATC 5 cut(s) 56, 664, 736, 750, 1006
ScaI AGTACT 1 cut(s) 788
SchI GAGTC 8 cut(s) 17, 143, 204, 297, 351, 362, 365, 408
ScrFI CCNGG 2 cut(s) 161, 843
SduI GDGCHC 1 cut(s) 848
SfaNI GCATC 3 cut(s) 532, 574, 624
SfoI GGCGCC 1 cut(s) 270
SgrAI CRCCGGYG 1 cut(s) 395
SmiMI CAYNNNNRTG 1 cut(s) 426
SmlI CTYRAG 1 cut(s) 42
SmoI CTYRAG 1 cut(s) 42
Sse9I AATT 5 cut(s) 527, 742, 906, 966, 978
SsiI CCGC 6 cut(s) 119, 173, 210, 323, 399, 449
SspDI GGCGCC 1 cut(s) 268
SspI AATATT 1 cut(s) 859
SspMI CTAG 3 cut(s) 48, 692, 1045
StyD4I CCNGG 2 cut(s) 159, 841
StyI CCWWGG 1 cut(s) 643
TaaI ACNGT 4 cut(s) 425, 434, 521, 904
TaiI ACGT 2 cut(s) 350, 819
TaqI TCGA 4 cut(s) 147, 156, 862, 1014
TasI AATT 5 cut(s) 527, 742, 906, 966, 978
TatI WGTACW 2 cut(s) 597, 786
TauI GCSGC 2 cut(s) 122, 175
TfiI GAWTC 1 cut(s) 290
Tru1I TTAA 4 cut(s) 185, 263, 390, 605
Tru9I TTAA 4 cut(s) 185, 263, 390, 605
TseFI GTSAC 2 cut(s) 196, 343
TseI GCWGC 3 cut(s) 122, 203, 362
Tsp45I GTSAC 2 cut(s) 196, 343
TspDTI ATGAA 5 cut(s) 60, 689, 817, 899, 1046
XapI RAATTY 2 cut(s) 527, 742
XceI RCATGY 1 cut(s) 229
XspI CTAG 3 cut(s) 48, 692, 1045
ZrmI AGTACT 1 cut(s) 788
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.