Rh3CG338000

Adipocyte plasma membrane-associated

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_samantha
Chr3C
OG0000797
Physical Location & Seq
Forward (+)
37778448 .. 37794262
15815 bp
Loading structure...
UTR
Exon/CDS
Intron
Rh3CG338000.1

Sequence Viewer

Length: 1329 bp
ATGCATCGATACTCTATACTATTTAACATAAAATATATCCTAATTAACATAAAATATATCAATGATGCGCAGACTCTCTCTCGTTGTCCAAGCACAATCCATCCATTTAACATTCTGTTCCGAGTTGCCTCCATAACTCGCCACCCAATCCACAAGTCAAGCAACCAAGACTCACCTTCCTCTGCAACTCAATCCACCAGAAGATCGTTATCGATCATCATGGCCGTCTTAAACACTCTCTTTTTCTCAATACTGGTTCCAGTCGCGGCGGCTGTGCTCCTCTACCAGCTCGACTCGTTCGACCCGGCTCCTCTGCCGCTTCACGAGTTGAGTGAGCAAGTCGCGGCTGCCCCGAGGCGTAATGGTCACATGCTCAAAGAGTCGGAGTTTTTGGGTGTTGGAACTTTAGCAGGGCCAGAAGACGTTGCTTATGATTCCAAGTCGGGACTCATTTACACGGGATGTGCGGACGGGTGGATCAAGCGAGTCAAGCTGAACGAGTCGGCTGATGACTCGGTGGTGGAGAACTGGGTTAATACCGGCGGGAGACCACTCGGACTCGCTCACGAACATGGCGGAAAGCTTTTGGTAGCTGACGCGGAAAAGGGACTATTGAGAATAGCTGAGGATGGAGCAGTGGAGCTGCTGACGGATGAGGCTGAGGGTGTAAAATTCAAGCTAACAAATTGTGTAGATGTAGCGAAAGATGGTATGATTTACTTCACAGATGCTTCATATAAATACAGCTTACAAGACTTCATCTGGGACTTTCTAGAGGGCAGACCCCATGGTAGGTTACTAAGCTACAATCCATTTACCAAAGAGACCAAAGTGCTCATTCGCAACCTCTTCTTTGCTAATGGAGTAGCACTCTCTCCATATCAGAATTATGTGATCTTCTGCGAAACTTTCATGAAAAGATGTAGAAAGTACTACCTACAAGGCGAGAAGAAAGGGAGCATAGAGAACTTCATTGACAACTTGCCAGGCTCTCCGGATAATATACGATATGATGGGGAAGGCCATTACTGGATCGCAATACCTATGGGGACTTCAACTATTTTGGATCTAGCACTTAGGTACCCTTTTATCCGAAAAGGGCTGGCAATCGTGGAGAAGTATATAGTGAGCAAACCATATAAGGAGAAGAATTCTGGTGTACTTGCTGTGAACCTGGAAGGGGAACCTACTGCCCATTATTTTGATCCAAATTTGTCACTCATTACAAGTGGGATCAAGATCGGAAATTACCTCTACTGTGGCTCCGTTCTCAATCCATACATTATCCGCCTAGATCTGGAACAACATCCTGCACATGCCACTACTTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
GO:0003674 GO:0003824 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005783 GO:0012505 GO:0016020 GO:0016787 GO:0016788 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044424 GO:0044444 GO:0044464
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
Str_synth

Protein Analysis

442

Amino Acids

49.41

Weight (kDa)

6.68

Isoelectric Point (pI)

39.68

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
SSL_N PF20067 125 - 163 1.9e-07 Strictosidine synthase-like, N-terminal
SGL PF08450 162 - 351 2.5e-12 SMP-30/Gluconolactonase/LRE-like region
Str_synth PF03088 229 - 315 1.1e-31 Strictosidine synthase
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
Acc16I TGCGCA 1 cut(s) 69
Acc65I GGTACC 1 cut(s) 1080
AccB1I GGYRCC 1 cut(s) 1080
AccII CGCG 3 cut(s) 266, 344, 599
AccIII TCCGGA 1 cut(s) 994
AciI CCGC 9 cut(s) 266, 269, 317, 344, 467, 543, 576, 599, 1288
AclWI GGATC 5 cut(s) 485, 1040, 1074, 1199, 1241
AcoI YGGCCR 1 cut(s) 222
AcsI RAATTY 3 cut(s) 671, 1150, 1210
AfaI GTAC 3 cut(s) 932, 1082, 1161
AfiI CCNNNNNNNGG 3 cut(s) 792, 1180, 1297
AgsI TTSAA 2 cut(s) 676, 1056
AjnI CCWGG 2 cut(s) 985, 1173
AluBI AGCT 9 cut(s) 289, 493, 583, 593, 623, 643, 679, 747, 804
AluI AGCT 9 cut(s) 289, 493, 583, 593, 623, 643, 679, 747, 804
Alw21I GWGCWC 2 cut(s) 279, 837
Alw26I GTCTC 2 cut(s) 541, 818
AlwI GGATC 5 cut(s) 485, 1040, 1074, 1199, 1241
Ama87I CYCGRG 1 cut(s) 352
Aor13HI TCCGGA 1 cut(s) 994
AoxI GGCC 3 cut(s) 222, 413, 1021
ApeKI GCWGC 2 cut(s) 347, 643
ApoI RAATTY 3 cut(s) 671, 1150, 1210
Asp718I GGTACC 1 cut(s) 1080
AspLEI GCGC 1 cut(s) 70
AspS9I GGNCC 1 cut(s) 413
AsuC2I CCSGG 1 cut(s) 305
AsuHPI GGTGA 1 cut(s) 165
AvaI CYCGRG 1 cut(s) 352
BaeI ACNNNNGTAYC 2 cut(s) 1064, 1097
BanI GGYRCC 1 cut(s) 1080
BauI CACGAG 1 cut(s) 323
BbsI GAAGAC 1 cut(s) 426
Bbv12I GWGCWC 2 cut(s) 279, 837
BbvCI CCTCAGC 2 cut(s) 624, 660
BbvI GCAGC 2 cut(s) 334, 630
BccI CCATC 4 cut(s) 108, 623, 701, 1007
BceAI ACGGC 1 cut(s) 209
BciT130I CCWGG 2 cut(s) 987, 1175
BcnI CCSGG 1 cut(s) 305
BcoDI GTCTC 2 cut(s) 541, 818
BfaI CTAG 3 cut(s) 773, 1070, 1292
BglII AGATCT 1 cut(s) 1294
BisI GCNGC 6 cut(s) 267, 270, 317, 345, 348, 644
BlsI GCNGC 6 cut(s) 268, 271, 318, 346, 349, 645
BmcAI AGTACT 1 cut(s) 932
Bme1390I CCNGG 3 cut(s) 305, 987, 1175
BmeT110I CYCGRG 1 cut(s) 352
BmgT120I GGNCC 1 cut(s) 413
BmiI GGNNCC 5 cut(s) 258, 309, 1082, 1185, 1264
BmrFI CCNGG 3 cut(s) 305, 987, 1175
BmrI ACTGGG 1 cut(s) 538
BmsI GCATC 3 cut(s) 13, 55, 718
BmuI ACTGGG 1 cut(s) 538
BpiI GAAGAC 1 cut(s) 426
BplI GAGNNNNNCTC 2 cut(s) 855, 887
Bpu10I CCTNAGC 2 cut(s) 624, 660
BpuMI CCSGG 1 cut(s) 305
Bsa29I ATCGAT 2 cut(s) 7, 212
BsaBI GATNNNNATC 2 cut(s) 208, 1238
BsaI GGTCTC 2 cut(s) 541, 818
BsaJI CCNNGG 2 cut(s) 353, 787
BsaWI WCCGGW 1 cut(s) 994
BsaXI ACNNNNNCTCC 2 cut(s) 1247, 1277
Bsc4I CCNNNNNNNGG 3 cut(s) 792, 1180, 1297
Bse118I RCCGGY 1 cut(s) 539
Bse1I ACTGG 4 cut(s) 258, 260, 533, 1034
Bse8I GATNNNNATC 2 cut(s) 208, 1238
BseAI TCCGGA 1 cut(s) 994
BseBI CCWGG 2 cut(s) 987, 1175
BseCI ATCGAT 2 cut(s) 7, 212
BseDI CCNNGG 2 cut(s) 353, 787
BseGI GGATG 5 cut(s) 100, 467, 634, 658, 1306
BseJI GATNNNNATC 2 cut(s) 208, 1238
BseLI CCNNNNNNNGG 3 cut(s) 792, 1180, 1297
BseMII CTCAG 2 cut(s) 615, 651
BseNI ACTGG 4 cut(s) 258, 260, 533, 1034
BseRI GAGGAG 2 cut(s) 269, 300
BseXI GCAGC 2 cut(s) 334, 630
BsgI GTGCAG 1 cut(s) 1296
Bsh1236I CGCG 3 cut(s) 266, 344, 599
BshFI GGCC 3 cut(s) 224, 415, 1023
BshNI GGYRCC 1 cut(s) 1080
BshVI ATCGAT 2 cut(s) 7, 212
BsiHKAI GWGCWC 2 cut(s) 279, 837
BsiHKCI CYCGRG 1 cut(s) 352
BsiSI CCGG 3 cut(s) 305, 540, 995
BslFI GGGAC 4 cut(s) 459, 621, 779, 1063
BslI CCNNNNNNNGG 3 cut(s) 792, 1180, 1297
BsmAI GTCTC 2 cut(s) 541, 818
BsmFI GGGAC 4 cut(s) 459, 621, 779, 1063
BsnI GGCC 3 cut(s) 224, 415, 1023
Bso31I GGTCTC 2 cut(s) 541, 818
BsoBI CYCGRG 1 cut(s) 352
Bsp1286I GDGCHC 2 cut(s) 279, 837
Bsp13I TCCGGA 1 cut(s) 994
Bsp19I CCATGG 1 cut(s) 787
BspACI CCGC 9 cut(s) 266, 269, 317, 344, 467, 543, 576, 599, 1288
BspANI GGCC 3 cut(s) 224, 415, 1023
BspCNI CTCAG 2 cut(s) 616, 652
BspDI ATCGAT 2 cut(s) 7, 212
BspEI TCCGGA 1 cut(s) 994
BspFNI CGCG 3 cut(s) 266, 344, 599
BspHI TCATGA 1 cut(s) 912
BspLI GGNNCC 5 cut(s) 258, 309, 1082, 1185, 1264
BspPI GGATC 5 cut(s) 485, 1040, 1074, 1199, 1241
BspT107I GGYRCC 1 cut(s) 1080
BspTNI GGTCTC 2 cut(s) 541, 818
BsrFI RCCGGY 1 cut(s) 539
BsrI ACTGG 4 cut(s) 258, 260, 533, 1034
BssAI RCCGGY 1 cut(s) 539
BssECI CCNNGG 2 cut(s) 353, 787
BssSI CACGAG 1 cut(s) 323
BssT1I CCWWGG 1 cut(s) 787
Bst2BI CACGAG 1 cut(s) 323
Bst2UI CCWGG 2 cut(s) 987, 1175
Bst4CI ACNGT 1 cut(s) 1259
Bst6I CTCTTC 1 cut(s) 854
BstC8I GCNNGC 1 cut(s) 1104
BstDEI CTNAG 4 cut(s) 624, 660, 800, 1076
BstDSI CCRYGG 1 cut(s) 787
BstF5I GGATG 5 cut(s) 100, 467, 634, 658, 1306
BstFNI CGCG 3 cut(s) 266, 344, 599
BstHHI GCGC 1 cut(s) 70
BstMAI GTCTC 2 cut(s) 541, 818
BstMWI GCNNNNNNNGC 1 cut(s) 490
BstNI CCWGG 2 cut(s) 987, 1175
BstNSI RCATGY 2 cut(s) 373, 1319
BstSCI CCNGG 3 cut(s) 303, 985, 1173
BstUI CGCG 3 cut(s) 266, 344, 599
BstV1I GCAGC 2 cut(s) 334, 630
BstV2I GAAGAC 1 cut(s) 426
BstX2I RGATCY 2 cut(s) 1066, 1294
BstYI RGATCY 2 cut(s) 1066, 1294
Bsu15I ATCGAT 2 cut(s) 7, 212
BsuRI GGCC 3 cut(s) 224, 415, 1023
BsuTUI ATCGAT 2 cut(s) 7, 212
BtgI CCRYGG 1 cut(s) 787
BtsCI GGATG 5 cut(s) 100, 467, 634, 658, 1306
BtsI GCAGTG 1 cut(s) 642
BtsIMutI CAGTG 1 cut(s) 642
Cac8I GCNNGC 1 cut(s) 1104
CciI TCATGA 1 cut(s) 912
CfoI GCGC 1 cut(s) 70
Cfr10I RCCGGY 1 cut(s) 539
Cfr13I GGNCC 1 cut(s) 413
ClaI ATCGAT 2 cut(s) 7, 212
CseI GACGC 1 cut(s) 605
Csp6I GTAC 3 cut(s) 931, 1081, 1160
CviAII CATG 6 cut(s) 220, 370, 572, 788, 913, 1316
CviQI GTAC 3 cut(s) 931, 1081, 1160
DdeI CTNAG 4 cut(s) 624, 660, 800, 1076
EaeI YGGCCR 1 cut(s) 222
Eam1104I CTCTTC 1 cut(s) 854
EarI CTCTTC 1 cut(s) 854
EciI GGCGGA 2 cut(s) 591, 1277
Eco130I CCWWGG 1 cut(s) 787
Eco31I GGTCTC 2 cut(s) 541, 818
Eco88I CYCGRG 1 cut(s) 352
EcoRI GAATTC 1 cut(s) 1150
EcoRII CCWGG 2 cut(s) 985, 1173
EcoT14I CCWWGG 1 cut(s) 787
EcoT22I ATGCAT 1 cut(s) 6
ErhI CCWWGG 1 cut(s) 787
FaeI CATG 6 cut(s) 223, 373, 575, 791, 916, 1319
FaqI GGGAC 4 cut(s) 459, 621, 779, 1063
FatI CATG 6 cut(s) 219, 369, 571, 787, 912, 1315
FauI CCCGC 1 cut(s) 536
Fnu4HI GCNGC 6 cut(s) 267, 270, 317, 345, 348, 644
FokI GGATG 5 cut(s) 87, 474, 641, 665, 1293
Fsp4HI GCNGC 6 cut(s) 267, 270, 317, 345, 348, 644
FspBI CTAG 3 cut(s) 773, 1070, 1292
FspI TGCGCA 1 cut(s) 69
GlaI GCGC 1 cut(s) 69
GluI GCNGC 6 cut(s) 267, 270, 317, 345, 348, 644
HaeIII GGCC 3 cut(s) 224, 415, 1023
HapII CCGG 3 cut(s) 305, 540, 995
HgaI GACGC 1 cut(s) 605
HhaI GCGC 1 cut(s) 70
Hin1II CATG 6 cut(s) 223, 373, 575, 791, 916, 1319
Hin6I GCGC 1 cut(s) 68
HinP1I GCGC 1 cut(s) 68
HindIII AAGCTT 1 cut(s) 581
HpaII CCGG 3 cut(s) 305, 540, 995
HphI GGTGA 1 cut(s) 165
Hpy166II GTNNAC 2 cut(s) 1160, 1171
Hpy188I TCNGA 6 cut(s) 122, 385, 557, 885, 1094, 1244
Hpy188III TCNNGA 8 cut(s) 323, 444, 566, 773, 913, 995, 1237, 1298
Hpy8I GTNNAC 2 cut(s) 1160, 1171
HpyAV CCTTC 3 cut(s) 186, 1013, 1172
HpyCH4III ACNGT 1 cut(s) 1259
HpyCH4IV ACGT 1 cut(s) 423
HpyCH4V TGCA 3 cut(s) 4, 185, 1313
HpyF10VI GCNNNNNNNGC 1 cut(s) 490
HpyF3I CTNAG 4 cut(s) 624, 660, 800, 1076
HpySE526I ACGT 1 cut(s) 423
Hsp92II CATG 6 cut(s) 223, 373, 575, 791, 916, 1319
HspAI GCGC 1 cut(s) 68
Kpn2I TCCGGA 1 cut(s) 994
KpnI GGTACC 1 cut(s) 1084
LmnI GCTCC 6 cut(s) 282, 313, 632, 640, 957, 1268
Lsp1109I GCAGC 2 cut(s) 334, 630
LweI GCATC 3 cut(s) 13, 55, 718
MaeI CTAG 3 cut(s) 773, 1070, 1292
MaeII ACGT 1 cut(s) 423
MaeIII GTNAC 3 cut(s) 365, 795, 1215
MboII GAAGA 6 cut(s) 213, 431, 841, 889, 961, 1159
MflI RGATCY 2 cut(s) 1066, 1294
MhlI GDGCHC 2 cut(s) 279, 837
MluCI AATT 7 cut(s) 42, 671, 685, 886, 1150, 1210, 1246
MlyI GAGTC 9 cut(s) 67, 164, 287, 389, 441, 495, 506, 509, 552
MmeI TCCRAC 2 cut(s) 363, 379
Mph1103I ATGCAT 1 cut(s) 6
MroI TCCGGA 1 cut(s) 994
MseI TTAA 5 cut(s) 24, 45, 108, 230, 534
MslI CAYNNNNRTG 1 cut(s) 570
MspI CCGG 3 cut(s) 305, 540, 995
MspR9I CCNGG 3 cut(s) 305, 987, 1175
MvaI CCWGG 2 cut(s) 987, 1175
MvnI CGCG 3 cut(s) 266, 344, 599
MwoI GCNNNNNNNGC 1 cut(s) 490
NciI CCSGG 1 cut(s) 305
NcoI CCATGG 1 cut(s) 787
NlaIII CATG 6 cut(s) 223, 373, 575, 791, 916, 1319
NlaIV GGNNCC 5 cut(s) 258, 309, 1082, 1185, 1264
NmuCI GTSAC 2 cut(s) 365, 1215
NsbI TGCGCA 1 cut(s) 69
NsiI ATGCAT 1 cut(s) 6
NspI RCATGY 2 cut(s) 373, 1319
PagI TCATGA 1 cut(s) 912
PcsI WCGNNNNNNNCGW 1 cut(s) 297
PfeI GAWTC 1 cut(s) 434
PkrI GCNGC 6 cut(s) 268, 271, 318, 346, 349, 645
PleI GAGTC 9 cut(s) 67, 164, 287, 388, 441, 494, 506, 508, 552
PpsI GAGTC 9 cut(s) 67, 164, 287, 388, 441, 494, 506, 508, 552
Psp6I CCWGG 2 cut(s) 985, 1173
PspGI CCWGG 2 cut(s) 985, 1173
PspN4I GGNNCC 5 cut(s) 258, 309, 1082, 1185, 1264
PspPI GGNCC 1 cut(s) 413
PsuI RGATCY 2 cut(s) 1066, 1294
RsaI GTAC 3 cut(s) 932, 1082, 1161
RsaNI GTAC 3 cut(s) 931, 1081, 1160
RseI CAYNNNNRTG 1 cut(s) 570
SaqAI TTAA 5 cut(s) 24, 45, 108, 230, 534
SatI GCNGC 6 cut(s) 267, 270, 317, 345, 348, 644
Sau96I GGNCC 1 cut(s) 413
ScaI AGTACT 1 cut(s) 932
SchI GAGTC 9 cut(s) 67, 164, 287, 389, 441, 495, 506, 509, 552
ScrFI CCNGG 3 cut(s) 305, 987, 1175
SduI GDGCHC 2 cut(s) 279, 837
SfaNI GCATC 3 cut(s) 13, 55, 718
SmiMI CAYNNNNRTG 1 cut(s) 570
Sse9I AATT 7 cut(s) 42, 671, 685, 886, 1150, 1210, 1246
SsiI CCGC 9 cut(s) 266, 269, 317, 344, 467, 543, 576, 599, 1288
SspMI CTAG 3 cut(s) 773, 1070, 1292
StyD4I CCNGG 3 cut(s) 303, 985, 1173
StyI CCWWGG 1 cut(s) 787
TaaI ACNGT 1 cut(s) 1259
TaiI ACGT 1 cut(s) 426
TaqI TCGA 4 cut(s) 7, 212, 291, 300
TasI AATT 7 cut(s) 42, 671, 685, 886, 1150, 1210, 1246
TatI WGTACW 2 cut(s) 930, 1159
TauI GCSGC 4 cut(s) 269, 272, 319, 347
TfiI GAWTC 1 cut(s) 434
Tru1I TTAA 5 cut(s) 24, 45, 108, 230, 534
Tru9I TTAA 5 cut(s) 24, 45, 108, 230, 534
TscAI CASTG 1 cut(s) 642
TseFI GTSAC 2 cut(s) 365, 1215
TseI GCWGC 2 cut(s) 347, 643
Tsp45I GTSAC 2 cut(s) 365, 1215
TspDTI ATGAA 5 cut(s) 723, 748, 901, 929, 961
TspGWI ACGGA 2 cut(s) 665, 1255
TspRI CASTG 1 cut(s) 642
XapI RAATTY 3 cut(s) 671, 1150, 1210
XbaI TCTAGA 1 cut(s) 772
XceI RCATGY 2 cut(s) 373, 1319
XspI CTAG 3 cut(s) 773, 1070, 1292
ZrmI AGTACT 1 cut(s) 932
Zsp2I ATGCAT 1 cut(s) 6
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.