Basic Information

Type: gene

Biological Identity

Species

arabidopsis_thaliana

Chromosome

Orthogroup ID

OG0000797

Physical Location & Seq

Genomic Coordinates Forward (+)

19090947 .. 19092511

Gene Structure 1565 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

AT3G51450.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1116 bp

ATGCCTGTACTTTTCTCCTCTCGTTCTCTCATACTCTCCATTATTGTCCCCTTACTTATATCTATCGCTCTCTACAAACTCGACACATTCGACCCCGCTATTGTTCCTTCCGATGCATTCACATCCTCTGCTACTTCACTCCCGCCGCTTATAAACGACGAATTTCTCACCGGAGCTGAGTTTATCGGTGTCGGTCTTCTCAATATACCCGAAGATATCGCCTACCATAAGGAATCTAATCTCATCTACACTGGTTGTGTTGATGGATGGGTGAAACGAGTCAAGGTCGCCGACTCGGTTAATGACTCAGTCGTTGAGGATTGGGTCAATACTGGTGGTAGACCGCTCGGAATCGCGTTCGGAATCCACGGCGAAGTCATTGTCGCAGACGTACACAAGGGACTGTTGAATATAAGCGGTGACGGAAAGAAGACGGAATTGTTGACGGACGAAGCGGACGGTGTGAAGTTTAAGCTGACGGATGCAGTTACCGTTGCAGATAACGGCGTTTTGTATTTCACAGATGCTTCTTACAAGTACACTCTCAATCAATTGAGTTTAGACATGTTAGAAGGGAAACCTTTTGGACGACTCTTGAGCTTTGATCCCACCACACGTGTTACAAAAGTACTTCTCAAAGACCTCTACTTCGCTAATGGCATCACCATCTCTCCTGATCAAACTCATCTCATCTTCTGTGAAACTCCAATGAAAAGGTGCAGCAAGTATTACATCAGTGAGGAGCGTGTGGAGGTATTCACTCAAAGCTTACCAGGTTATCCAGATAACATTCGTTACGATGGAGATGGACATTACTGGATTGCATTGCCTTCGGGAGTCACGACATTGTGGAATATCTCGTTGAAATACCCTTTCTTGAGGAAACTCACAGCAATGGTGGCTAAGTACGGCGTGGATCTTATGTTTATGGAGAATGCAGGCGTTTTACAGGTGGATTTGGATGGAAATCCCATCGCGTACTACCATGATCCAAAACTCTCTCACATAGCCACATGTGACAAGATTGGGAAATATCTCTATTGTGGAAGTCTCTCGCAATCACATATCCTCCGACTTGATCTCCTGAAATATCCTGCACAGAACAAGAAACTTTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0001101 GO:0003674 GO:0003824 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005783 GO:0006950 GO:0008150 GO:0009605 GO:0009607 GO:0009611 GO:0009615 GO:0009620 GO:0009719 GO:0009723 GO:0009725 GO:0009751 GO:0009753 GO:0010033 GO:0012505 GO:0014070 GO:0016020 GO:0016787 GO:0016788 GO:0042221 GO:0042493 GO:0043207 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044424 GO:0044444 GO:0044464 GO:0046677 GO:0050896 GO:0051704 GO:0051707 GO:1901700

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

Str_synth

Protein Analysis

371

Amino Acids

41.12

Weight (kDa)

5.4

Isoelectric Point (pI)

36.16

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
SGL	PF08450	74 - 279	3.7e-14	SMP-30/Gluconolactonase/LRE-like region
Str_synth	PF03088	161 - 248	4.6e-39	Strictosidine synthase

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0000797)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT3G51420 AT3G51430 AT3G51430 AT3G51440 AT3G51450
fragaria_vesca	FvH4_1g10570 FvH4_1g10571 FvH4_1g10572
malus_domestica	MD02G1119800.v1.1 MD02G1119900.v1.1
prunus_persica	Prupe.7G178800_v2.0.a1 Prupe.7G179100_v2.0.a1
pyrus_communis	pycom02g09330 pycom02g09340 pycom02g09350 pycom15g20840
rosa_chinensis	RchiOBHm_Chr2g0097641 RchiOBHm_Chr2g0173351 RchiOBHm_Chr3g0449291 RchiOBHm_Chr3g0492501 RchiOBHm_Chr3g0492521 RchiOBHm_Chr3g0492531
rosa_laevigata	RLG00000016730 RLG00000016731 RLG00000022762 RLG00000025842
rosa_multiflora	Rmu_co8425041.1_g000001 Rmu_sc0000971.1_g000010 Rmu_sc0000971.1_g000016 Rmu_sc0004874.1_g000001 Rmu_sc0010088.1_g000002 Rmu_sc0010088.1_g000009 Rmu_sc0016955.1_g000001 Rmu_sc0020190.1_g000005 Rmu_sc0026896.1_g000001 Rmu_ssc0000282.1_g000007
rosa_roxburghii	Rroxscaffold_2G00144630 Rroxscaffold_2G00144640 Rroxscaffold_6G00392230 Rroxscaffold_6G00427290
rosa_rugosa	Rorug02G0068000 Rorug02G0068100 Rorug02G0619400 Rorug02G0619400 Rorug03G0254300
rosa_samantha	Rh2AG114400 Rh2AG114500 Rh2AG647900 Rh2BG117100 Rh2BG117300 Rh2BG658400 Rh2CG119100 Rh2CG119300 Rh2DG118100 Rh2DG673800 Rh3AG017400 Rh3AG304700 Rh3BG017500 Rh3BG340600 Rh3CG016500 Rh3CG338000 Rh3CG338100 Rh3DG017800 Rh3DG339800
rosa_wichuraiana	Rw2G008940 Rw2G008960 Rw2G053190 Rw3G001330 Rw3G026840

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AanI	TTATAA	1 cut(s)	152
AccBSI	CCGCTC	1 cut(s)	346
AccI	GTMKAC	1 cut(s)	340
AccII	CGCG	2 cut(s)	356, 977
AciI	CCGC	6 cut(s)	96, 143, 146, 344, 417, 455
AclWI	GGATC	3 cut(s)	599, 924, 983
AcsI	RAATTY	1 cut(s)	161
AcvI	CACGTG	1 cut(s)	617
AfaI	GTAC	6 cut(s)	9, 393, 539, 630, 908, 980
AflIII	ACRYGT	4 cut(s)	564, 614, 616, 1013
AgsI	TTSAA	2 cut(s)	409, 865
AjnI	CCWGG	1 cut(s)	772
AluBI	AGCT	4 cut(s)	176, 475, 600, 768
AluI	AGCT	4 cut(s)	176, 475, 600, 768
Alw26I	GTCTC	1 cut(s)	1055
AlwI	GGATC	3 cut(s)	599, 924, 983
ApeKI	GCWGC	1 cut(s)	720
ApoI	RAATTY	1 cut(s)	161
ArsI	GACNNNNNNTTYG	4 cut(s)	366, 398, 632, 664
AsuHPI	GGTGA	4 cut(s)	160, 283, 431, 655
BbrPI	CACGTG	1 cut(s)	617
BbsI	GAAGAC	2 cut(s)	188, 437
BbvI	GCAGC	1 cut(s)	732
BccI	CCATC	7 cut(s)	257, 261, 674, 794, 800, 956, 980
BceAI	ACGGC	3 cut(s)	385, 520, 925
BcgI	CGANNNNNNTGC	2 cut(s)	813, 847
BciT130I	CCWGG	1 cut(s)	774
BclI	TGATCA	1 cut(s)	676
BcoDI	GTCTC	1 cut(s)	1055
BisI	GCNGC	2 cut(s)	146, 721
BlsI	GCNGC	2 cut(s)	147, 722
BmcAI	AGTACT	1 cut(s)	630
Bme1390I	CCNGG	1 cut(s)	774
BmrFI	CCNGG	1 cut(s)	774
BmsI	GCATC	4 cut(s)	103, 472, 514, 669
BpiI	GAAGAC	2 cut(s)	188, 437
BpuEI	CTTGAG	2 cut(s)	616, 898
BsaAI	YACGTR	1 cut(s)	617
BsaBI	GATNNNNATC	1 cut(s)	966
BsaJI	CCNNGG	1 cut(s)	367
BsaWI	WCCGGW	1 cut(s)	170
BsaXI	ACNNNNNCTCC	6 cut(s)	655, 685, 1053, 1065, 1083, 1095
Bse1I	ACTGG	3 cut(s)	256, 337, 821
Bse3DI	GCAATG	2 cut(s)	824, 900
Bse8I	GATNNNNATC	1 cut(s)	966
BseBI	CCWGG	1 cut(s)	774
BseDI	CCNNGG	1 cut(s)	367
BseGI	GGATG	4 cut(s)	122, 272, 487, 967
BseJI	GATNNNNATC	1 cut(s)	966
BseMI	GCAATG	2 cut(s)	824, 900
BseMII	CTCAG	2 cut(s)	168, 321
BseNI	ACTGG	3 cut(s)	256, 337, 821
BseRI	GAGGAG	2 cut(s)	7, 755
BseXI	GCAGC	1 cut(s)	732
BsgI	GTGCAG	2 cut(s)	739, 1080
Bsh1236I	CGCG	2 cut(s)	356, 977
BsiSI	CCGG	1 cut(s)	171
BslFI	GGGAC	2 cut(s)	32, 414
BsmAI	GTCTC	1 cut(s)	1055
BsmFI	GGGAC	2 cut(s)	32, 414
BsmI	GAATGC	2 cut(s)	116, 940
Bsp143I	GATC	5 cut(s)	604, 676, 916, 988, 1078
BspACI	CCGC	6 cut(s)	96, 143, 146, 344, 417, 455
BspCNI	CTCAG	2 cut(s)	169, 320
BspFNI	CGCG	2 cut(s)	356, 977
BspPI	GGATC	3 cut(s)	599, 924, 983
BsrBI	CCGCTC	1 cut(s)	346
BsrDI	GCAATG	2 cut(s)	824, 900
BsrI	ACTGG	3 cut(s)	256, 337, 821
BssECI	CCNNGG	1 cut(s)	367
BssMI	GATC	5 cut(s)	604, 676, 916, 988, 1078
Bst2UI	CCWGG	1 cut(s)	774
Bst4CI	ACNGT	3 cut(s)	405, 461, 493
BstBAI	YACGTR	1 cut(s)	617
BstC8I	GCNNGC	1 cut(s)	940
BstDEI	CTNAG	3 cut(s)	177, 307, 903
BstDSI	CCRYGG	1 cut(s)	367
BstF5I	GGATG	4 cut(s)	122, 272, 487, 967
BstFNI	CGCG	2 cut(s)	356, 977
BstKTI	GATC	5 cut(s)	607, 679, 919, 991, 1081
BstMAI	GTCTC	1 cut(s)	1055
BstMBI	GATC	5 cut(s)	604, 676, 916, 988, 1078
BstMWI	GCNNNNNNNGC	1 cut(s)	899
BstNI	CCWGG	1 cut(s)	774
BstNSI	RCATGY	2 cut(s)	568, 1017
BstSCI	CCNGG	1 cut(s)	772
BstUI	CGCG	2 cut(s)	356, 977
BstV1I	GCAGC	1 cut(s)	732
BstV2I	GAAGAC	2 cut(s)	188, 437
BstX2I	RGATCY	1 cut(s)	916
BstYI	RGATCY	1 cut(s)	916
BtgI	CCRYGG	1 cut(s)	367
BtgZI	GCGATG	1 cut(s)	958
BtsCI	GGATG	4 cut(s)	122, 272, 487, 967
BtsIMutI	CAGTG	2 cut(s)	249, 742
Cac8I	GCNNGC	1 cut(s)	940
CsiI	ACCWGGT	1 cut(s)	772
Csp6I	GTAC	6 cut(s)	8, 392, 538, 629, 907, 979
CspCI	CAANNNNNGTGG	2 cut(s)	316, 351
CviAII	CATG	3 cut(s)	565, 986, 1014
CviJI	RGCY	6 cut(s)	176, 475, 600, 768, 902, 1010
CviKI_1	RGCY	6 cut(s)	176, 475, 600, 768, 902, 1010
CviQI	GTAC	6 cut(s)	8, 392, 538, 629, 907, 979
DdeI	CTNAG	3 cut(s)	177, 307, 903
DpnI	GATC	5 cut(s)	606, 678, 918, 990, 1080
DpnII	GATC	5 cut(s)	604, 676, 916, 988, 1078
Eco32I	GATATC	1 cut(s)	217
Eco72I	CACGTG	1 cut(s)	617
EcoRII	CCWGG	1 cut(s)	772
EcoRV	GATATC	1 cut(s)	217
EcoT22I	ATGCAT	1 cut(s)	118
FaeI	CATG	3 cut(s)	568, 989, 1017
FaqI	GGGAC	2 cut(s)	32, 414
FatI	CATG	3 cut(s)	564, 985, 1013
FauI	CCCGC	2 cut(s)	103, 150
FbaI	TGATCA	1 cut(s)	676
FblI	GTMKAC	1 cut(s)	340
Fnu4HI	GCNGC	2 cut(s)	146, 721
FokI	GGATG	4 cut(s)	109, 279, 494, 974
Fsp4HI	GCNGC	2 cut(s)	146, 721
GluI	GCNGC	2 cut(s)	146, 721
HapII	CCGG	1 cut(s)	171
Hin1II	CATG	3 cut(s)	568, 989, 1017
HincII	GTYRAC	1 cut(s)	444
HindII	GTYRAC	1 cut(s)	444
HindIII	AAGCTT	1 cut(s)	766
HinfI	GANTC	8 cut(s)	233, 279, 293, 305, 351, 363, 591, 837
HpaII	CCGG	1 cut(s)	171
HphI	GGTGA	4 cut(s)	160, 283, 431, 655
Hpy166II	GTNNAC	4 cut(s)	341, 394, 444, 540
Hpy188I	TCNGA	4 cut(s)	112, 350, 362, 1073
Hpy188III	TCNNGA	7 cut(s)	595, 674, 782, 834, 841, 877, 1084
Hpy8I	GTNNAC	4 cut(s)	341, 394, 444, 540
Hpy99I	CGWCG	1 cut(s)	161
HpyAV	CCTTC	3 cut(s)	117, 566, 840
HpyCH4III	ACNGT	3 cut(s)	405, 461, 493
HpyCH4IV	ACGT	2 cut(s)	390, 616
HpyCH4V	TGCA	7 cut(s)	116, 485, 497, 720, 824, 938, 1097
HpyF10VI	GCNNNNNNNGC	1 cut(s)	899
HpyF3I	CTNAG	3 cut(s)	177, 307, 903
HpySE526I	ACGT	2 cut(s)	390, 616
Hsp92II	CATG	3 cut(s)	568, 989, 1017
Ksp22I	TGATCA	1 cut(s)	676
Kzo9I	GATC	5 cut(s)	604, 676, 916, 988, 1078
LmnI	GCTCC	2 cut(s)	173, 742
Lsp1109I	GCAGC	1 cut(s)	732
LweI	GCATC	4 cut(s)	103, 472, 514, 669
MabI	ACCWGGT	1 cut(s)	772
MaeII	ACGT	2 cut(s)	390, 616
MaeIII	GTNAC	6 cut(s)	419, 487, 619, 794, 838, 1016
MalI	GATC	5 cut(s)	606, 678, 918, 990, 1080
MbiI	CCGCTC	1 cut(s)	346
MboI	GATC	5 cut(s)	604, 676, 916, 988, 1078
MboII	GAAGA	4 cut(s)	188, 224, 442, 685
MfeI	CAATTG	1 cut(s)	551
MflI	RGATCY	1 cut(s)	916
MluCI	AATT	3 cut(s)	161, 437, 551
MlyI	GAGTC	5 cut(s)	287, 288, 299, 585, 846
MmeI	TCCRAC	1 cut(s)	1096
MnlI	CCTC	8 cut(s)	28, 136, 310, 653, 733, 745, 873, 1079
Mph1103I	ATGCAT	1 cut(s)	118
MseI	TTAA	2 cut(s)	300, 471
MslI	CAYNNNNRTG	1 cut(s)	893
MspI	CCGG	1 cut(s)	171
MspR9I	CCNGG	1 cut(s)	774
MunI	CAATTG	1 cut(s)	551
Mva1269I	GAATGC	2 cut(s)	116, 940
MvaI	CCWGG	1 cut(s)	774
MvnI	CGCG	2 cut(s)	356, 977
MwoI	GCNNNNNNNGC	1 cut(s)	899
NdeII	GATC	5 cut(s)	604, 676, 916, 988, 1078
NlaIII	CATG	3 cut(s)	568, 989, 1017
NmuCI	GTSAC	3 cut(s)	419, 838, 1016
NsiI	ATGCAT	1 cut(s)	118
NspI	RCATGY	2 cut(s)	568, 1017
PciI	ACATGT	2 cut(s)	564, 1013
PcsI	WCGNNNNNNNCGW	2 cut(s)	87, 839
PctI	GAATGC	2 cut(s)	116, 940
PfeI	GAWTC	3 cut(s)	233, 351, 363
PflFI	GACNNNGTC	1 cut(s)	308
PkrI	GCNGC	2 cut(s)	147, 722
PleI	GAGTC	5 cut(s)	287, 287, 299, 585, 845
PmaCI	CACGTG	1 cut(s)	617
PmlI	CACGTG	1 cut(s)	617
PpsI	GAGTC	5 cut(s)	287, 287, 299, 585, 845
Ppu21I	YACGTR	1 cut(s)	617
PscI	ACATGT	2 cut(s)	564, 1013
PsiI	TTATAA	1 cut(s)	152
Psp6I	CCWGG	1 cut(s)	772
PspCI	CACGTG	1 cut(s)	617
PspGI	CCWGG	1 cut(s)	772
PsuI	RGATCY	1 cut(s)	916
PsyI	GACNNNGTC	1 cut(s)	308
RsaI	GTAC	6 cut(s)	9, 393, 539, 630, 908, 980
RsaNI	GTAC	6 cut(s)	8, 392, 538, 629, 907, 979
RseI	CAYNNNNRTG	1 cut(s)	893
SaqAI	TTAA	2 cut(s)	300, 471
SatI	GCNGC	2 cut(s)	146, 721
Sau3AI	GATC	5 cut(s)	604, 676, 916, 988, 1078
ScaI	AGTACT	1 cut(s)	630
SchI	GAGTC	5 cut(s)	287, 288, 299, 585, 846
ScrFI	CCNGG	1 cut(s)	774
SexAI	ACCWGGT	1 cut(s)	772
SfaNI	GCATC	4 cut(s)	103, 472, 514, 669
SmiMI	CAYNNNNRTG	1 cut(s)	893
SmlI	CTYRAG	2 cut(s)	595, 877
SmoI	CTYRAG	2 cut(s)	595, 877
Sse9I	AATT	3 cut(s)	161, 437, 551
SsiI	CCGC	6 cut(s)	96, 143, 146, 344, 417, 455
StyD4I	CCNGG	1 cut(s)	772
TaaI	ACNGT	3 cut(s)	405, 461, 493
TaiI	ACGT	2 cut(s)	393, 619
TaqI	TCGA	2 cut(s)	81, 90
TaqII	GACCGA	1 cut(s)	182
TasI	AATT	3 cut(s)	161, 437, 551
TatI	WGTACW	3 cut(s)	7, 537, 628
TauI	GCSGC	1 cut(s)	148
TfiI	GAWTC	3 cut(s)	233, 351, 363
Tru1I	TTAA	2 cut(s)	300, 471
Tru9I	TTAA	2 cut(s)	300, 471
TscAI	CASTG	2 cut(s)	256, 742
TseFI	GTSAC	3 cut(s)	419, 838, 1016
TseI	GCWGC	1 cut(s)	720
Tsp45I	GTSAC	3 cut(s)	419, 838, 1016
TspDTI	ATGAA	1 cut(s)	725
TspGWI	ACGGA	4 cut(s)	438, 449, 461, 494
TspRI	CASTG	2 cut(s)	256, 742
Tth111I	GACNNNGTC	1 cut(s)	308
XapI	RAATTY	1 cut(s)	161
XceI	RCATGY	2 cut(s)	568, 1017
XmiI	GTMKAC	1 cut(s)	340
ZrmI	AGTACT	1 cut(s)	630
Zsp2I	ATGCAT	1 cut(s)	118

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.