Rroxscaffold_2G00144640

Adipocyte plasma membrane-associated

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_roxburghii
GWHEROQ00000002
OG0000797
Physical Location & Seq
Forward (+)
82546364 .. 82552454
6091 bp
Loading structure...
UTR
Exon/CDS
Intron
Rroxscaffold_2G00144640.1

Sequence Viewer

Length: 1185 bp
ATGCCCGAGTCAAACAACCATAACTCACCTTCCCCTTCAACTCAAGCTAGTAGAAGATCATCATCATCTTCATCATGGCCTTTGAACTTTCTCCTCTTCTCAATACTGGTTCCGGTGGCGGCAGCTCTGGTAATCCTCTACCAGCTCGACCCGTTCGACCCGGCTCCTCTGCCTCTTCACGAGTTGAGCCACCGAGTCGCCGCTGCCCCAGCGCATAATGCTCACATGCTCAAAGGGTCGGAGTTTATAGGTGCTGGGGATTTAGTGGCGCCGGAAGACGTTGCTTATGATTCAAAGTCGGGACTCATTTACACGGGCTGCGCGGACGGGTGGGTGAAGCGAGTCACGTTGAACGAGTCGGCTGCTGACTCGGTGGTTGAGAACTGGGTTAACACCGGCGGGAGACCACTCGGACTCGCTCACGGTCATAACGGTCAGCTTTTGGTGGCGGACACAGAAAAGGGATTACTGAGTATAAGTGAGGATGGAGAAGTGGAGCTGTTGACTGATGAGGCTGAGGGTGTGAAATTCAAGCTAACAGATGCTGTGGATGTAGCAAAAGATGGCATGATTTACTTCACAGATGCTTCATATAAGTACAGCTTCAAAGACTTTATCTGGGACGTTTTGGAGGGCAAACCGCATGGAAGATTACTCAGCTACGATCCAACTATCAAAGAAACCAAAGTGCTAGTCCCCGACCTCTACTTTGGTAATGGAGTTGCAATCTCTCCGGATCAGAATTTTGTGATCTTCTGTGAAACTGTCATGAGAAGATGTAAAAAGTACTACCTGCAAGGCAAGAAGAAAGGAAACGTAGAGAACTTCATTGACAACTTGCCGGGCACCCCTGATAATATTCGATATGATGGGGAAGGCCATTACTGGATTGCATTTTCTACGGAGATTACAGATTCTTGGAATTTAGCACTTAGGTTCCCTTTTATTCGAAAATGGCTGGCAATCATGGAGAAGTATACAACAGGAAGACCCCATATGGAGAAAAATTCTGGTGTAATGTCTGTTAATTTGGAAGGGGAACCTATTGCCCACTACTTTGATCCAGGGTTATCACTCATTTCAAGTGGGATCAAGATTGGAAATTACCTATACTGCGGTTCAATTATCTATCCATACATTATCCGCTTCGATCTGGAACGGCATCCTGCACACGCCACTATATGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
GO:0003674 GO:0003824 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005783 GO:0012505 GO:0016020 GO:0016787 GO:0016788 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044424 GO:0044444 GO:0044464
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
Str_synth

Protein Analysis

394

Amino Acids

43.68

Weight (kDa)

5.46

Isoelectric Point (pI)

38.28

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
SSL_N PF20067 77 - 115 8.5e-07 Strictosidine synthase-like, N-terminal
SGL PF08450 132 - 299 4.3e-14 SMP-30/Gluconolactonase/LRE-like region
Str_synth PF03088 181 - 267 1.3e-34 Strictosidine synthase
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
Acc36I ACCTGC 1 cut(s) 801
AccB1I GGYRCC 2 cut(s) 268, 845
AccI GTMKAC 1 cut(s) 977
AccII CGCG 1 cut(s) 323
AccIII TCCGGA 1 cut(s) 733
AciI CCGC 8 cut(s) 119, 201, 323, 399, 449, 641, 1116, 1144
AclWI GGATC 4 cut(s) 659, 744, 1055, 1097
AcsI RAATTY 4 cut(s) 527, 742, 922, 1006
AcyI GRCGYC 1 cut(s) 269
AfaI GTAC 2 cut(s) 599, 788
AgsI TTSAA 8 cut(s) 39, 85, 294, 352, 532, 607, 1083, 1122
AjnI CCWGG 1 cut(s) 1063
AluBI AGCT 8 cut(s) 47, 125, 145, 439, 499, 535, 603, 660
AluI AGCT 8 cut(s) 47, 125, 145, 439, 499, 535, 603, 660
Alw26I GTCTC 1 cut(s) 397
AlwI GGATC 4 cut(s) 659, 744, 1055, 1097
AlwNI CAGNNNCTG 1 cut(s) 545
Ama87I CYCGRG 1 cut(s) 5
Aor13HI TCCGGA 1 cut(s) 733
AoxI GGCC 2 cut(s) 77, 877
ApeKI GCWGC 4 cut(s) 122, 203, 318, 362
ApoI RAATTY 4 cut(s) 527, 742, 922, 1006
ArsI GACNNNNNNTTYG 4 cut(s) 678, 692, 710, 724
AspLEI GCGC 3 cut(s) 214, 271, 323
AsuC2I CCSGG 2 cut(s) 161, 843
AsuHPI GGTGA 2 cut(s) 18, 346
AsuII TTCGAA 1 cut(s) 949
AvaI CYCGRG 1 cut(s) 5
BaeGI GKGCMC 1 cut(s) 848
BanI GGYRCC 2 cut(s) 268, 845
BauI CACGAG 1 cut(s) 179
BbsI GAAGAC 2 cut(s) 282, 994
BbvCI CCTCAGC 1 cut(s) 516
BbvI GCAGC 4 cut(s) 134, 190, 305, 349
BccI CCATC 3 cut(s) 479, 557, 863
BceAI ACGGC 1 cut(s) 1175
BcgI CGANNNNNNTGC 2 cut(s) 344, 378
BciT130I CCWGG 1 cut(s) 1065
BcnI CCSGG 2 cut(s) 161, 843
BcoDI GTCTC 1 cut(s) 397
BfaI CTAG 2 cut(s) 48, 692
BfoI RGCGCY 1 cut(s) 272
BfuAI ACCTGC 1 cut(s) 801
BisI GCNGC 6 cut(s) 120, 123, 201, 204, 319, 363
BlsI GCNGC 6 cut(s) 121, 124, 202, 205, 320, 364
BmcAI AGTACT 1 cut(s) 788
Bme1390I CCNGG 3 cut(s) 161, 843, 1065
BmeT110I CYCGRG 1 cut(s) 5
BmiI GGNNCC 6 cut(s) 111, 165, 270, 847, 938, 1041
BmrFI CCNGG 3 cut(s) 161, 843, 1065
BmrI ACTGGG 1 cut(s) 394
BmsI GCATC 3 cut(s) 532, 574, 1171
BmuI ACTGGG 1 cut(s) 394
BpiI GAAGAC 2 cut(s) 282, 994
Bpu10I CCTNAGC 1 cut(s) 516
Bpu14I TTCGAA 1 cut(s) 949
BpuEI CTTGAG 1 cut(s) 27
BpuMI CCSGG 2 cut(s) 161, 843
BsaBI GATNNNNATC 1 cut(s) 61
BsaHI GRCGYC 1 cut(s) 269
BsaI GGTCTC 1 cut(s) 397
BsaJI CCNNGG 1 cut(s) 1064
BsaWI WCCGGW 2 cut(s) 112, 733
Bse118I RCCGGY 1 cut(s) 395
Bse1I ACTGG 3 cut(s) 111, 389, 890
Bse8I GATNNNNATC 1 cut(s) 61
BseAI TCCGGA 1 cut(s) 733
BseBI CCWGG 1 cut(s) 1065
BseDI CCNNGG 1 cut(s) 1064
BseGI GGATG 3 cut(s) 490, 556, 1162
BseJI GATNNNNATC 1 cut(s) 61
BseMII CTCAG 3 cut(s) 461, 507, 670
BseNI ACTGG 3 cut(s) 111, 389, 890
BseRI GAGGAG 2 cut(s) 83, 156
BseSI GKGCMC 1 cut(s) 848
BseXI GCAGC 4 cut(s) 134, 190, 305, 349
BseYI CCCAGC 2 cut(s) 208, 254
BsgI GTGCAG 1 cut(s) 1152
Bsh1236I CGCG 1 cut(s) 323
BshFI GGCC 2 cut(s) 79, 879
BshNI GGYRCC 2 cut(s) 268, 845
BsiHKCI CYCGRG 1 cut(s) 5
BsiSI CCGG 6 cut(s) 113, 161, 272, 396, 734, 842
BslFI GGGAC 3 cut(s) 315, 635, 680
BsmAI GTCTC 1 cut(s) 397
BsmFI GGGAC 3 cut(s) 315, 635, 680
BsnI GGCC 2 cut(s) 79, 879
Bso31I GGTCTC 1 cut(s) 397
BsoBI CYCGRG 1 cut(s) 5
Bsp119I TTCGAA 1 cut(s) 949
Bsp1286I GDGCHC 1 cut(s) 848
Bsp13I TCCGGA 1 cut(s) 733
Bsp143I GATC 7 cut(s) 56, 664, 736, 750, 1060, 1089, 1150
BspACI CCGC 8 cut(s) 119, 201, 323, 399, 449, 641, 1116, 1144
BspANI GGCC 2 cut(s) 79, 879
BspCNI CTCAG 3 cut(s) 462, 508, 669
BspEI TCCGGA 1 cut(s) 733
BspFNI CGCG 1 cut(s) 323
BspHI TCATGA 1 cut(s) 768
BspLI GGNNCC 6 cut(s) 111, 165, 270, 847, 938, 1041
BspMI ACCTGC 1 cut(s) 801
BspPI GGATC 4 cut(s) 659, 744, 1055, 1097
BspT104I TTCGAA 1 cut(s) 949
BspT107I GGYRCC 2 cut(s) 268, 845
BspTNI GGTCTC 1 cut(s) 397
BsrFI RCCGGY 1 cut(s) 395
BsrI ACTGG 3 cut(s) 111, 389, 890
BssAI RCCGGY 1 cut(s) 395
BssECI CCNNGG 1 cut(s) 1064
BssMI GATC 7 cut(s) 56, 664, 736, 750, 1060, 1089, 1150
BssNAI GTATAC 1 cut(s) 978
BssNI GRCGYC 1 cut(s) 269
BssSI CACGAG 1 cut(s) 179
Bst1107I GTATAC 1 cut(s) 978
Bst2BI CACGAG 1 cut(s) 179
Bst2UI CCWGG 1 cut(s) 1065
Bst4CI ACNGT 3 cut(s) 425, 434, 766
Bst6I CTCTTC 2 cut(s) 101, 180
BstACI GRCGYC 1 cut(s) 269
BstBI TTCGAA 1 cut(s) 949
BstC8I GCNNGC 1 cut(s) 960
BstDEI CTNAG 4 cut(s) 470, 516, 656, 932
BstF5I GGATG 3 cut(s) 490, 556, 1162
BstFNI CGCG 1 cut(s) 323
BstH2I RGCGCY 1 cut(s) 272
BstHHI GCGC 3 cut(s) 214, 271, 323
BstKTI GATC 7 cut(s) 59, 667, 739, 753, 1063, 1092, 1153
BstMAI GTCTC 1 cut(s) 397
BstMBI GATC 7 cut(s) 56, 664, 736, 750, 1060, 1089, 1150
BstMWI GCNNNNNNNGC 2 cut(s) 209, 218
BstNI CCWGG 1 cut(s) 1065
BstNSI RCATGY 1 cut(s) 229
BstSCI CCNGG 3 cut(s) 159, 841, 1063
BstSLI GKGCMC 1 cut(s) 848
BstUI CGCG 1 cut(s) 323
BstV1I GCAGC 4 cut(s) 134, 190, 305, 349
BstV2I GAAGAC 2 cut(s) 282, 994
BstZ17I GTATAC 1 cut(s) 978
BsuRI GGCC 2 cut(s) 79, 879
BtsCI GGATG 3 cut(s) 490, 556, 1162
BveI ACCTGC 1 cut(s) 801
Cac8I GCNNGC 1 cut(s) 960
CaiI CAGNNNCTG 1 cut(s) 545
CciI TCATGA 1 cut(s) 768
CfoI GCGC 3 cut(s) 214, 271, 323
Cfr10I RCCGGY 1 cut(s) 395
Csp6I GTAC 2 cut(s) 598, 787
CviAII CATG 6 cut(s) 75, 226, 568, 644, 769, 967
CviQI GTAC 2 cut(s) 598, 787
DdeI CTNAG 4 cut(s) 470, 516, 656, 932
DinI GGCGCC 1 cut(s) 270
DpnI GATC 7 cut(s) 58, 666, 738, 752, 1062, 1091, 1152
DpnII GATC 7 cut(s) 56, 664, 736, 750, 1060, 1089, 1150
Eam1104I CTCTTC 2 cut(s) 101, 180
EarI CTCTTC 2 cut(s) 101, 180
EciI GGCGGA 1 cut(s) 464
Eco31I GGTCTC 1 cut(s) 397
Eco88I CYCGRG 1 cut(s) 5
EcoRII CCWGG 1 cut(s) 1063
EgeI GGCGCC 1 cut(s) 270
EheI GGCGCC 1 cut(s) 270
FaeI CATG 6 cut(s) 78, 229, 571, 647, 772, 970
FalI AAGNNNNNCTT 2 cut(s) 587, 619
FaqI GGGAC 3 cut(s) 315, 635, 680
FatI CATG 6 cut(s) 74, 225, 567, 643, 768, 966
FauI CCCGC 1 cut(s) 392
FauNDI CATATG 1 cut(s) 996
FblI GTMKAC 1 cut(s) 977
Fnu4HI GCNGC 6 cut(s) 120, 123, 201, 204, 319, 363
FokI GGATG 3 cut(s) 497, 563, 1149
Fsp4HI GCNGC 6 cut(s) 120, 123, 201, 204, 319, 363
FspBI CTAG 2 cut(s) 48, 692
GlaI GCGC 3 cut(s) 213, 270, 322
GluI GCNGC 6 cut(s) 120, 123, 201, 204, 319, 363
GsaI CCCAGC 2 cut(s) 212, 258
HaeII RGCGCY 1 cut(s) 272
HaeIII GGCC 2 cut(s) 79, 879
HapII CCGG 6 cut(s) 113, 161, 272, 396, 734, 842
HhaI GCGC 3 cut(s) 214, 271, 323
Hin1I GRCGYC 1 cut(s) 269
Hin1II CATG 6 cut(s) 78, 229, 571, 647, 772, 970
Hin6I GCGC 3 cut(s) 212, 269, 321
HinP1I GCGC 3 cut(s) 212, 269, 321
HincII GTYRAC 2 cut(s) 391, 504
HindII GTYRAC 2 cut(s) 391, 504
HinfI GANTC 9 cut(s) 8, 195, 290, 303, 342, 356, 368, 414, 914
HpaI GTTAAC 1 cut(s) 391
HpaII CCGG 6 cut(s) 113, 161, 272, 396, 734, 842
HphI GGTGA 2 cut(s) 18, 346
Hpy166II GTNNAC 3 cut(s) 391, 504, 978
Hpy188I TCNGA 3 cut(s) 241, 413, 741
Hpy188III TCNNGA 6 cut(s) 179, 300, 734, 769, 1093, 1154
Hpy8I GTNNAC 3 cut(s) 391, 504, 978
HpyAV CCTTC 4 cut(s) 39, 45, 869, 1028
HpyCH4III ACNGT 3 cut(s) 425, 434, 766
HpyCH4IV ACGT 4 cut(s) 279, 347, 624, 816
HpyCH4V TGCA 4 cut(s) 725, 796, 893, 1169
HpyF10VI GCNNNNNNNGC 2 cut(s) 209, 218
HpyF3I CTNAG 4 cut(s) 470, 516, 656, 932
HpySE526I ACGT 4 cut(s) 279, 347, 624, 816
Hsp92I GRCGYC 1 cut(s) 269
Hsp92II CATG 6 cut(s) 78, 229, 571, 647, 772, 970
HspAI GCGC 3 cut(s) 212, 269, 321
KasI GGCGCC 1 cut(s) 268
Kpn2I TCCGGA 1 cut(s) 733
KspAI GTTAAC 1 cut(s) 391
Kzo9I GATC 7 cut(s) 56, 664, 736, 750, 1060, 1089, 1150
LmnI GCTCC 2 cut(s) 169, 496
Lsp1109I GCAGC 4 cut(s) 134, 190, 305, 349
LweI GCATC 3 cut(s) 532, 574, 1171
MaeI CTAG 2 cut(s) 48, 692
MaeII ACGT 4 cut(s) 279, 347, 624, 816
MaeIII GTNAC 1 cut(s) 343
MalI GATC 7 cut(s) 58, 666, 738, 752, 1062, 1091, 1152
MboI GATC 7 cut(s) 56, 664, 736, 750, 1060, 1089, 1150
MhlI GDGCHC 1 cut(s) 848
MluCI AATT 7 cut(s) 527, 742, 922, 1006, 1027, 1102, 1122
Mly113I GGCGCC 1 cut(s) 269
MlyI GAGTC 7 cut(s) 17, 204, 297, 351, 362, 365, 408
MmeI TCCRAC 2 cut(s) 219, 692
MnlI CCTC 9 cut(s) 104, 146, 177, 183, 475, 505, 511, 625, 713
MroI TCCGGA 1 cut(s) 733
MseI TTAA 2 cut(s) 390, 1026
MspA1I CMGCKG 1 cut(s) 203
MspI CCGG 6 cut(s) 113, 161, 272, 396, 734, 842
MspR9I CCNGG 3 cut(s) 161, 843, 1065
MvaI CCWGG 1 cut(s) 1065
MvnI CGCG 1 cut(s) 323
MwoI GCNNNNNNNGC 2 cut(s) 209, 218
NarI GGCGCC 1 cut(s) 269
NciI CCSGG 2 cut(s) 161, 843
NdeI CATATG 1 cut(s) 996
NdeII GATC 7 cut(s) 56, 664, 736, 750, 1060, 1089, 1150
NlaIII CATG 6 cut(s) 78, 229, 571, 647, 772, 970
NlaIV GGNNCC 6 cut(s) 111, 165, 270, 847, 938, 1041
NmuCI GTSAC 1 cut(s) 343
NspI RCATGY 1 cut(s) 229
NspV TTCGAA 1 cut(s) 949
PagI TCATGA 1 cut(s) 768
PcsI WCGNNNNNNNCGW 1 cut(s) 153
PfeI GAWTC 2 cut(s) 290, 914
PkrI GCNGC 6 cut(s) 121, 124, 202, 205, 320, 364
PleI GAGTC 7 cut(s) 16, 203, 297, 350, 362, 364, 408
PluTI GGCGCC 1 cut(s) 272
PpsI GAGTC 7 cut(s) 16, 203, 297, 350, 362, 364, 408
Psp6I CCWGG 1 cut(s) 1063
PspFI CCCAGC 2 cut(s) 208, 254
PspGI CCWGG 1 cut(s) 1063
PspN4I GGNNCC 6 cut(s) 111, 165, 270, 847, 938, 1041
PstNI CAGNNNCTG 1 cut(s) 545
RsaI GTAC 2 cut(s) 599, 788
RsaNI GTAC 2 cut(s) 598, 787
SaqAI TTAA 2 cut(s) 390, 1026
SatI GCNGC 6 cut(s) 120, 123, 201, 204, 319, 363
Sau3AI GATC 7 cut(s) 56, 664, 736, 750, 1060, 1089, 1150
ScaI AGTACT 1 cut(s) 788
SchI GAGTC 7 cut(s) 17, 204, 297, 351, 362, 365, 408
ScrFI CCNGG 3 cut(s) 161, 843, 1065
SduI GDGCHC 1 cut(s) 848
SfaNI GCATC 3 cut(s) 532, 574, 1171
SfoI GGCGCC 1 cut(s) 270
SfuI TTCGAA 1 cut(s) 949
SgrAI CRCCGGYG 1 cut(s) 395
SmlI CTYRAG 1 cut(s) 42
SmoI CTYRAG 1 cut(s) 42
Sse9I AATT 7 cut(s) 527, 742, 922, 1006, 1027, 1102, 1122
SsiI CCGC 8 cut(s) 119, 201, 323, 399, 449, 641, 1116, 1144
SspDI GGCGCC 1 cut(s) 268
SspI AATATT 1 cut(s) 859
SspMI CTAG 2 cut(s) 48, 692
StyD4I CCNGG 3 cut(s) 159, 841, 1063
TaaI ACNGT 3 cut(s) 425, 434, 766
TaiI ACGT 4 cut(s) 282, 350, 627, 819
TaqI TCGA 5 cut(s) 147, 156, 862, 949, 1149
TasI AATT 7 cut(s) 527, 742, 922, 1006, 1027, 1102, 1122
TatI WGTACW 2 cut(s) 597, 786
TauI GCSGC 2 cut(s) 122, 203
TfiI GAWTC 2 cut(s) 290, 914
Tru1I TTAA 2 cut(s) 390, 1026
Tru9I TTAA 2 cut(s) 390, 1026
TseFI GTSAC 1 cut(s) 343
TseI GCWGC 4 cut(s) 122, 203, 318, 362
Tsp45I GTSAC 1 cut(s) 343
TspDTI ATGAA 3 cut(s) 60, 579, 817
TspGWI ACGGA 1 cut(s) 917
XapI RAATTY 4 cut(s) 527, 742, 922, 1006
XceI RCATGY 1 cut(s) 229
XmiI GTMKAC 1 cut(s) 977
XspI CTAG 2 cut(s) 48, 692
ZrmI AGTACT 1 cut(s) 788
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.