Rroxscaffold_6G00392230

Adipocyte plasma membrane-associated

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_roxburghii
GWHEROQ00000006
OG0000797
Physical Location & Seq
Reverse (-)
11685924 .. 11692883
6960 bp
Loading structure...
UTR
Exon/CDS
Intron
Rroxscaffold_6G00392230.1

Sequence Viewer

Length: 1110 bp
ATGGCCCTCTTAAACACTCTCTTTTTCTCAATACTGGTTCCGGTGGCGGCGGCTGTGCTCCTCTACCAGCTCGACTCGTTCGACCCGGCTCCTCTGCCGCTTCACGAGTTGAGTGAGCAAGTCGCGGCTGCGCCGAGGATCAATGGTCACATGCTCAAAGGGTCGGAGTTTTTGGGTGTTGGGACTTTAGCAGGGCCAGAAGACGTTGCTTATGATTCCAAGTCGGGACTCATTTACACGGGATGTGCGGACGGGTGGATCAAGCGAGTCAAGCTGAACGAGTCGGCTGATGACTCGGTGGTGGAGAACTGGGTTAATACCGGCGGGAGACCACTCGGACTCGCTCACGAACATGGCGGAAAGCTTTTGGTAGCTGACGCGGAAAAGGGGCTACTAAGAATAGCTGAGGATGGAGCAGTGGAGCTGCTGACAGATGAGGCTGAGAGTGTAAAATTCAAGCTAACAGATTGTGTAGATGTAGCGAAAGATGGTATGATTTACTTCACAGATGCTTCATATAAAAACGGCTTACAAGACTTCATCTGGGACCTTCTAGAGGGCAGACCCCATGGTAGGTTACTAAGCTACAATCCGTTTACCAAAGAGACCAAAGTGCTCGTCCGCGACCTCTATTTTGCTAATGGAGTAGCACTCTCTCCGGATCAGAATTATGTGATCTTCTGCGAAACTTTGATGAAAAGATGTAGAAAGTACTACCTACAAGGCGAGAAGAAAGGGAGCATAGAGAACTTCATTGACAACTTGCCAGGCTCTCCGGATAATATACGATATGATGGGGAAGGCCATTACTGGATCGCACTACCTACGGGGACTTCAGCTATTTTTGATCTAACACTTAGGTACCCCTTTATCCGAAAAGGGCTGGCAATCGTGGAGAAGTATATAGTGAGCAGACCATATAAGGAGAAGAATTCTGGTGTACTTGCTGTGAACTTGGAAGGGGAACCTACTGCCCACTATTTTGATCCAGATTTGGCACTCATTACAAGTGGGATCAAGATCGGAAACTACCTCTACTGCGGCTCCATTCTCAATCCATACCTTATCCGCCTAGATCTTGAACAACATCATGCACACACCACTACATGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
GO:0003674 GO:0003824 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005783 GO:0012505 GO:0016020 GO:0016787 GO:0016788 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044424 GO:0044444 GO:0044464
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
Str_synth

Protein Analysis

369

Amino Acids

40.85

Weight (kDa)

5.25

Isoelectric Point (pI)

27.03

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
SSL_N PF20067 52 - 90 8.9e-08 Strictosidine synthase-like, N-terminal
SGL PF08450 88 - 277 1.2e-13 SMP-30/Gluconolactonase/LRE-like region
Str_synth PF03088 157 - 242 9.2e-32 Strictosidine synthase
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
Acc65I GGTACC 1 cut(s) 861
AccB1I GGYRCC 1 cut(s) 861
AccII CGCG 3 cut(s) 125, 380, 624
AccIII TCCGGA 2 cut(s) 658, 775
AclWI GGATC 6 cut(s) 146, 266, 669, 821, 980, 1022
AcsI RAATTY 2 cut(s) 452, 931
AcuI CTGAAG 1 cut(s) 819
AfaI GTAC 3 cut(s) 713, 863, 942
AfiI CCNNNNNNNGG 2 cut(s) 556, 573
AgsI TTSAA 2 cut(s) 457, 1082
AjnI CCWGG 1 cut(s) 766
AluBI AGCT 9 cut(s) 70, 274, 364, 374, 404, 424, 460, 585, 839
AluI AGCT 9 cut(s) 70, 274, 364, 374, 404, 424, 460, 585, 839
Alw21I GWGCWC 2 cut(s) 60, 618
Alw26I GTCTC 2 cut(s) 322, 599
AlwI GGATC 6 cut(s) 146, 266, 669, 821, 980, 1022
Aor13HI TCCGGA 2 cut(s) 658, 775
AoxI GGCC 3 cut(s) 3, 194, 802
ApeKI GCWGC 2 cut(s) 128, 424
ApoI RAATTY 2 cut(s) 452, 931
ArsI GACNNNNNNTTYG 4 cut(s) 603, 617, 635, 649
Asp718I GGTACC 1 cut(s) 861
AspLEI GCGC 1 cut(s) 133
AspS9I GGNCC 3 cut(s) 4, 194, 547
AsuC2I CCSGG 1 cut(s) 86
AvaII GGWCC 1 cut(s) 547
BaeI ACNNNNGTAYC 2 cut(s) 845, 878
BanI GGYRCC 1 cut(s) 861
BauI CACGAG 1 cut(s) 104
BbsI GAAGAC 1 cut(s) 207
Bbv12I GWGCWC 2 cut(s) 60, 618
BbvCI CCTCAGC 1 cut(s) 405
BbvI GCAGC 2 cut(s) 115, 411
BccI CCATC 3 cut(s) 404, 482, 788
BceAI ACGGC 1 cut(s) 541
BciT130I CCWGG 1 cut(s) 768
BcnI CCSGG 1 cut(s) 86
BcoDI GTCTC 2 cut(s) 322, 599
BfaI CTAG 2 cut(s) 554, 1073
BglII AGATCT 1 cut(s) 1075
BisI GCNGC 7 cut(s) 48, 51, 98, 126, 129, 425, 1042
BlsI GCNGC 7 cut(s) 49, 52, 99, 127, 130, 426, 1043
BmcAI AGTACT 1 cut(s) 713
Bme1390I CCNGG 2 cut(s) 86, 768
Bme18I GGWCC 1 cut(s) 547
BmgT120I GGNCC 3 cut(s) 4, 194, 547
BmiI GGNNCC 6 cut(s) 39, 90, 548, 863, 966, 1045
BmrFI CCNGG 2 cut(s) 86, 768
BmrI ACTGGG 1 cut(s) 319
BmsI GCATC 1 cut(s) 499
BmuI ACTGGG 1 cut(s) 319
BpiI GAAGAC 1 cut(s) 207
BplI GAGNNNNNCTC 2 cut(s) 636, 668
Bpu10I CCTNAGC 1 cut(s) 405
BpuMI CCSGG 1 cut(s) 86
BsaBI GATNNNNATC 1 cut(s) 1019
BsaI GGTCTC 2 cut(s) 322, 599
BsaJI CCNNGG 2 cut(s) 134, 568
BsaWI WCCGGW 3 cut(s) 40, 658, 775
BsaXI ACNNNNNCTCC 2 cut(s) 1028, 1058
Bsc4I CCNNNNNNNGG 2 cut(s) 556, 573
Bse118I RCCGGY 1 cut(s) 320
Bse1I ACTGG 3 cut(s) 39, 314, 815
Bse8I GATNNNNATC 1 cut(s) 1019
BseAI TCCGGA 2 cut(s) 658, 775
BseBI CCWGG 1 cut(s) 768
BseDI CCNNGG 2 cut(s) 134, 568
BseGI GGATG 2 cut(s) 248, 415
BseJI GATNNNNATC 1 cut(s) 1019
BseLI CCNNNNNNNGG 2 cut(s) 556, 573
BseMII CTCAG 2 cut(s) 396, 432
BseNI ACTGG 3 cut(s) 39, 314, 815
BseRI GAGGAG 2 cut(s) 50, 81
BseXI GCAGC 2 cut(s) 115, 411
Bsh1236I CGCG 3 cut(s) 125, 380, 624
BshFI GGCC 3 cut(s) 5, 196, 804
BshNI GGYRCC 1 cut(s) 861
BsiHKAI GWGCWC 2 cut(s) 60, 618
BsiSI CCGG 5 cut(s) 41, 86, 321, 659, 776
BslFI GGGAC 4 cut(s) 196, 240, 560, 844
BslI CCNNNNNNNGG 2 cut(s) 556, 573
BsmAI GTCTC 2 cut(s) 322, 599
BsmFI GGGAC 4 cut(s) 196, 240, 560, 844
BsnI GGCC 3 cut(s) 5, 196, 804
Bso31I GGTCTC 2 cut(s) 322, 599
Bsp1286I GDGCHC 2 cut(s) 60, 618
Bsp13I TCCGGA 2 cut(s) 658, 775
Bsp19I CCATGG 1 cut(s) 568
BspANI GGCC 3 cut(s) 5, 196, 804
BspCNI CTCAG 2 cut(s) 397, 433
BspEI TCCGGA 2 cut(s) 658, 775
BspFNI CGCG 3 cut(s) 125, 380, 624
BspLI GGNNCC 6 cut(s) 39, 90, 548, 863, 966, 1045
BspPI GGATC 6 cut(s) 146, 266, 669, 821, 980, 1022
BspT107I GGYRCC 1 cut(s) 861
BspTNI GGTCTC 2 cut(s) 322, 599
BsrFI RCCGGY 1 cut(s) 320
BsrI ACTGG 3 cut(s) 39, 314, 815
BssAI RCCGGY 1 cut(s) 320
BssECI CCNNGG 2 cut(s) 134, 568
BssSI CACGAG 1 cut(s) 104
BssT1I CCWWGG 1 cut(s) 568
Bst2BI CACGAG 1 cut(s) 104
Bst2UI CCWGG 1 cut(s) 768
BstC8I GCNNGC 1 cut(s) 885
BstDEI CTNAG 5 cut(s) 395, 405, 441, 581, 857
BstDSI CCRYGG 1 cut(s) 568
BstENI CCTNNNNNAGG 1 cut(s) 554
BstF5I GGATG 2 cut(s) 248, 415
BstFNI CGCG 3 cut(s) 125, 380, 624
BstHHI GCGC 1 cut(s) 133
BstMAI GTCTC 2 cut(s) 322, 599
BstMWI GCNNNNNNNGC 1 cut(s) 271
BstNI CCWGG 1 cut(s) 768
BstNSI RCATGY 1 cut(s) 154
BstSCI CCNGG 2 cut(s) 84, 766
BstUI CGCG 3 cut(s) 125, 380, 624
BstV1I GCAGC 2 cut(s) 115, 411
BstV2I GAAGAC 1 cut(s) 207
BstX2I RGATCY 1 cut(s) 1075
BstYI RGATCY 1 cut(s) 1075
BsuRI GGCC 3 cut(s) 5, 196, 804
BtgI CCRYGG 1 cut(s) 568
BtsCI GGATG 2 cut(s) 248, 415
BtsI GCAGTG 1 cut(s) 423
BtsIMutI CAGTG 1 cut(s) 423
Cac8I GCNNGC 1 cut(s) 885
CfoI GCGC 1 cut(s) 133
Cfr10I RCCGGY 1 cut(s) 320
Cfr13I GGNCC 3 cut(s) 4, 194, 547
CseI GACGC 1 cut(s) 386
Csp6I GTAC 3 cut(s) 712, 862, 941
CviAII CATG 5 cut(s) 151, 353, 569, 1091, 1107
CviQI GTAC 3 cut(s) 712, 862, 941
DdeI CTNAG 5 cut(s) 395, 405, 441, 581, 857
EciI GGCGGA 2 cut(s) 372, 1058
Eco130I CCWWGG 1 cut(s) 568
Eco31I GGTCTC 2 cut(s) 322, 599
Eco47I GGWCC 1 cut(s) 547
Eco57I CTGAAG 1 cut(s) 819
EcoNI CCTNNNNNAGG 1 cut(s) 554
EcoO109I RGGNCCY 1 cut(s) 547
EcoRI GAATTC 1 cut(s) 931
EcoRII CCWGG 1 cut(s) 766
EcoT14I CCWWGG 1 cut(s) 568
ErhI CCWWGG 1 cut(s) 568
FaeI CATG 5 cut(s) 154, 356, 572, 1094, 1110
FaqI GGGAC 4 cut(s) 196, 240, 560, 844
FatI CATG 5 cut(s) 150, 352, 568, 1090, 1106
FauI CCCGC 1 cut(s) 317
Fnu4HI GCNGC 7 cut(s) 48, 51, 98, 126, 129, 425, 1042
FokI GGATG 2 cut(s) 255, 422
Fsp4HI GCNGC 7 cut(s) 48, 51, 98, 126, 129, 425, 1042
FspBI CTAG 2 cut(s) 554, 1073
GlaI GCGC 1 cut(s) 132
GluI GCNGC 7 cut(s) 48, 51, 98, 126, 129, 425, 1042
HaeIII GGCC 3 cut(s) 5, 196, 804
HapII CCGG 5 cut(s) 41, 86, 321, 659, 776
HgaI GACGC 1 cut(s) 386
HhaI GCGC 1 cut(s) 133
Hin1II CATG 5 cut(s) 154, 356, 572, 1094, 1110
Hin6I GCGC 1 cut(s) 131
HinP1I GCGC 1 cut(s) 131
HindIII AAGCTT 1 cut(s) 362
HinfI GANTC 7 cut(s) 74, 215, 228, 267, 281, 293, 339
HpaII CCGG 5 cut(s) 41, 86, 321, 659, 776
Hpy166II GTNNAC 3 cut(s) 597, 941, 952
Hpy188I TCNGA 5 cut(s) 166, 338, 666, 875, 1025
Hpy188III TCNNGA 9 cut(s) 104, 225, 347, 554, 659, 776, 989, 1018, 1079
Hpy8I GTNNAC 3 cut(s) 597, 941, 952
HpyAV CCTTC 3 cut(s) 560, 794, 953
HpyCH4IV ACGT 1 cut(s) 204
HpyCH4V TGCA 1 cut(s) 1094
HpyF10VI GCNNNNNNNGC 1 cut(s) 271
HpyF3I CTNAG 5 cut(s) 395, 405, 441, 581, 857
HpySE526I ACGT 1 cut(s) 204
Hsp92II CATG 5 cut(s) 154, 356, 572, 1094, 1110
HspAI GCGC 1 cut(s) 131
Kpn2I TCCGGA 2 cut(s) 658, 775
KpnI GGTACC 1 cut(s) 865
LmnI GCTCC 6 cut(s) 63, 94, 413, 421, 738, 1049
Lsp1109I GCAGC 2 cut(s) 115, 411
LweI GCATC 1 cut(s) 499
MaeI CTAG 2 cut(s) 554, 1073
MaeII ACGT 1 cut(s) 204
MaeIII GTNAC 2 cut(s) 146, 576
MboII GAAGA 4 cut(s) 212, 670, 742, 940
MflI RGATCY 1 cut(s) 1075
MhlI GDGCHC 2 cut(s) 60, 618
MluCI AATT 3 cut(s) 452, 667, 931
MlyI GAGTC 6 cut(s) 68, 222, 276, 287, 290, 333
MmeI TCCRAC 1 cut(s) 144
MnlI CCTC 9 cut(s) 17, 71, 102, 129, 400, 430, 550, 638, 1043
MroI TCCGGA 2 cut(s) 658, 775
MseI TTAA 2 cut(s) 11, 315
MslI CAYNNNNRTG 1 cut(s) 351
MspI CCGG 5 cut(s) 41, 86, 321, 659, 776
MspR9I CCNGG 2 cut(s) 86, 768
MvaI CCWGG 1 cut(s) 768
MvnI CGCG 3 cut(s) 125, 380, 624
MwoI GCNNNNNNNGC 1 cut(s) 271
NciI CCSGG 1 cut(s) 86
NcoI CCATGG 1 cut(s) 568
NlaIII CATG 5 cut(s) 154, 356, 572, 1094, 1110
NlaIV GGNNCC 6 cut(s) 39, 90, 548, 863, 966, 1045
NmeAIII GCCGAG 1 cut(s) 159
NmuCI GTSAC 1 cut(s) 146
NspI RCATGY 1 cut(s) 154
PcsI WCGNNNNNNNCGW 1 cut(s) 78
PfeI GAWTC 1 cut(s) 215
PkrI GCNGC 7 cut(s) 49, 52, 99, 127, 130, 426, 1043
PleI GAGTC 6 cut(s) 68, 222, 275, 287, 289, 333
PpsI GAGTC 6 cut(s) 68, 222, 275, 287, 289, 333
PpuMI RGGWCCY 1 cut(s) 547
Psp5II RGGWCCY 1 cut(s) 547
Psp6I CCWGG 1 cut(s) 766
PspGI CCWGG 1 cut(s) 766
PspN4I GGNNCC 6 cut(s) 39, 90, 548, 863, 966, 1045
PspPI GGNCC 3 cut(s) 4, 194, 547
PspPPI RGGWCCY 1 cut(s) 547
PsuI RGATCY 1 cut(s) 1075
RsaI GTAC 3 cut(s) 713, 863, 942
RsaNI GTAC 3 cut(s) 712, 862, 941
RseI CAYNNNNRTG 1 cut(s) 351
SaqAI TTAA 2 cut(s) 11, 315
SatI GCNGC 7 cut(s) 48, 51, 98, 126, 129, 425, 1042
Sau96I GGNCC 3 cut(s) 4, 194, 547
ScaI AGTACT 1 cut(s) 713
SchI GAGTC 6 cut(s) 68, 222, 276, 287, 290, 333
ScrFI CCNGG 2 cut(s) 86, 768
SduI GDGCHC 2 cut(s) 60, 618
SfaNI GCATC 1 cut(s) 499
SinI GGWCC 1 cut(s) 547
SmiMI CAYNNNNRTG 1 cut(s) 351
Sse9I AATT 3 cut(s) 452, 667, 931
SspMI CTAG 2 cut(s) 554, 1073
StyD4I CCNGG 2 cut(s) 84, 766
StyI CCWWGG 1 cut(s) 568
TaiI ACGT 1 cut(s) 207
TaqI TCGA 2 cut(s) 72, 81
TasI AATT 3 cut(s) 452, 667, 931
TatI WGTACW 2 cut(s) 711, 940
TauI GCSGC 5 cut(s) 50, 53, 100, 128, 1044
TfiI GAWTC 1 cut(s) 215
Tru1I TTAA 2 cut(s) 11, 315
Tru9I TTAA 2 cut(s) 11, 315
TscAI CASTG 1 cut(s) 423
TseFI GTSAC 1 cut(s) 146
TseI GCWGC 2 cut(s) 128, 424
Tsp45I GTSAC 1 cut(s) 146
TspDTI ATGAA 4 cut(s) 504, 529, 710, 742
TspGWI ACGGA 1 cut(s) 582
TspRI CASTG 1 cut(s) 423
VpaK11BI GGWCC 1 cut(s) 547
XagI CCTNNNNNAGG 1 cut(s) 554
XapI RAATTY 2 cut(s) 452, 931
XbaI TCTAGA 1 cut(s) 553
XceI RCATGY 1 cut(s) 154
XspI CTAG 2 cut(s) 554, 1073
ZrmI AGTACT 1 cut(s) 713
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.