Rh3BG340600

Adipocyte plasma membrane-associated

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_samantha
Chr3B
OG0000797
Physical Location & Seq
Forward (+)
36553124 .. 36563968
10845 bp
Loading structure...
UTR
Exon/CDS
Intron
Rh3BG340600.1

Sequence Viewer

Length: 1110 bp
ATGGCCCTCTTAAACACTCTCTTTTTCTCAATACTGGTTCCGGTGGCGGCGGCTGTGCTCCTCTACCAGCTCGACTCGTTCGACCCGGCTCCTCTGCCGCTTCACGAGTTGAGTGAGCAAGTCGCGGCTGCCCCGAGGCGTAATGGTCACATGCTCAAAGGGTCGGAGTTTTTGGGTGTTGGGACTTTAGCAGGGCCAGAAGACGTTGCTTATGATTCCAAGTCGGGAATCATTTACACGGGATGTGCGGACGGGTGGATCAAGCGAGTCAAGCTGAACGAGTCGGCTGATGACTCGGTGGTGGAGAACTGGGTTAATACCGGCGGGAGACCACTCGGACTCGCTCACGAACATGGCGGAAAGCTTTTGGTAGCTGACGCGGAAAAGGGACTACTGAGAATAGCTGAGGATGGAGCAGTGGAGCTACTGACGGATGAGGCTGAGGGTGTAAAATTCAAGCTAACAGATTGTGTAGATGTAGCGAAAGATGGTATGATTTACTTCACAGATGCTTCATATAAAAACAGCTTACAAGACTTCATCTGGGACTTTCTAGAGGGCAGACCCCATGGTAGGTTACTAAGCTACAATCCGTTTACCAAAGAGACCAAAGTGCTCATTCGCAACCTCTACTTTGCTAATGGAGTAGCACTCTCTCCGGATCAGAATTATGTGATCTTCTGCGAAACTTTCATGAAAAGATGTAGAAAGTACTACCTACAAGGCGAGAAGAAAGGGAGCATAGAGAACTTCATTGACAACTTGCCAGGCTCTCCGGATAATATACGATATGATGGGGAAGGCCATTACTGGATCGCAATACCTATGGGGAGTTCAAGTATTTTGGATCTAGCACTTAGGTACCCTTTTATCCGAAAAGGGCTGGCAATCGTGGAGAAGTATATAGTGAGCAGACCATATAAGGAGAAGAATTCTGGTGTACTTGCTGTGAACTTGGAAGGGGAACCTACTGCCCATTATTTTGATCCAGATTTGTCACTCATTACAAGTGGGATCAAGATCGGAAATTACCTCTACTGCGGCTCCATTCTCAATCCATACATTATCCGCCTAGATCTGGAACAACATCCTGCACATGCCACTACATGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
GO:0003674 GO:0003824 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005783 GO:0012505 GO:0016020 GO:0016787 GO:0016788 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044424 GO:0044444 GO:0044464
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
Str_synth

Protein Analysis

369

Amino Acids

40.89

Weight (kDa)

5.35

Isoelectric Point (pI)

30.57

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
SSL_N PF20067 52 - 90 2.1e-07 Strictosidine synthase-like, N-terminal
SGL PF08450 105 - 278 2.6e-13 SMP-30/Gluconolactonase/LRE-like region
Str_synth PF03088 157 - 242 2e-32 Strictosidine synthase
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
Acc65I GGTACC 1 cut(s) 861
AccB1I GGYRCC 1 cut(s) 861
AccII CGCG 2 cut(s) 125, 380
AccIII TCCGGA 2 cut(s) 658, 775
AclWI GGATC 6 cut(s) 266, 669, 821, 855, 980, 1022
AcsI RAATTY 2 cut(s) 452, 931
AfaI GTAC 3 cut(s) 713, 863, 942
AfiI CCNNNNNNNGG 2 cut(s) 573, 1078
AgsI TTSAA 2 cut(s) 457, 837
AjnI CCWGG 1 cut(s) 766
AluBI AGCT 9 cut(s) 70, 274, 364, 374, 404, 424, 460, 528, 585
AluI AGCT 9 cut(s) 70, 274, 364, 374, 404, 424, 460, 528, 585
Alw21I GWGCWC 2 cut(s) 60, 618
Alw26I GTCTC 2 cut(s) 322, 599
AlwI GGATC 6 cut(s) 266, 669, 821, 855, 980, 1022
Ama87I CYCGRG 1 cut(s) 133
Aor13HI TCCGGA 2 cut(s) 658, 775
AoxI GGCC 3 cut(s) 3, 194, 802
ApeKI GCWGC 1 cut(s) 128
ApoI RAATTY 2 cut(s) 452, 931
Asp718I GGTACC 1 cut(s) 861
AspS9I GGNCC 2 cut(s) 4, 194
AsuC2I CCSGG 1 cut(s) 86
AvaI CYCGRG 1 cut(s) 133
BaeI ACNNNNGTAYC 2 cut(s) 845, 878
BanI GGYRCC 1 cut(s) 861
BauI CACGAG 1 cut(s) 104
BbsI GAAGAC 1 cut(s) 207
Bbv12I GWGCWC 2 cut(s) 60, 618
BbvCI CCTCAGC 2 cut(s) 405, 441
BbvI GCAGC 1 cut(s) 115
BccI CCATC 3 cut(s) 404, 482, 788
BciT130I CCWGG 1 cut(s) 768
BcnI CCSGG 1 cut(s) 86
BcoDI GTCTC 2 cut(s) 322, 599
BfaI CTAG 3 cut(s) 554, 851, 1073
BglII AGATCT 1 cut(s) 1075
BisI GCNGC 6 cut(s) 48, 51, 98, 126, 129, 1042
BlsI GCNGC 6 cut(s) 49, 52, 99, 127, 130, 1043
BmcAI AGTACT 1 cut(s) 713
Bme1390I CCNGG 2 cut(s) 86, 768
BmeT110I CYCGRG 1 cut(s) 133
BmgT120I GGNCC 2 cut(s) 4, 194
BmiI GGNNCC 5 cut(s) 39, 90, 863, 966, 1045
BmrFI CCNGG 2 cut(s) 86, 768
BmrI ACTGGG 1 cut(s) 319
BmsI GCATC 1 cut(s) 499
BmuI ACTGGG 1 cut(s) 319
BpiI GAAGAC 1 cut(s) 207
BplI GAGNNNNNCTC 2 cut(s) 636, 668
Bpu10I CCTNAGC 2 cut(s) 405, 441
BpuMI CCSGG 1 cut(s) 86
BsaBI GATNNNNATC 1 cut(s) 1019
BsaI GGTCTC 2 cut(s) 322, 599
BsaJI CCNNGG 2 cut(s) 134, 568
BsaWI WCCGGW 3 cut(s) 40, 658, 775
BsaXI ACNNNNNCTCC 4 cut(s) 823, 853, 1028, 1058
Bsc4I CCNNNNNNNGG 2 cut(s) 573, 1078
Bse118I RCCGGY 1 cut(s) 320
Bse1I ACTGG 3 cut(s) 39, 314, 815
Bse8I GATNNNNATC 1 cut(s) 1019
BseAI TCCGGA 2 cut(s) 658, 775
BseBI CCWGG 1 cut(s) 768
BseDI CCNNGG 2 cut(s) 134, 568
BseGI GGATG 4 cut(s) 248, 415, 439, 1087
BseJI GATNNNNATC 1 cut(s) 1019
BseLI CCNNNNNNNGG 2 cut(s) 573, 1078
BseMII CTCAG 3 cut(s) 386, 396, 432
BseNI ACTGG 3 cut(s) 39, 314, 815
BseRI GAGGAG 2 cut(s) 50, 81
BseXI GCAGC 1 cut(s) 115
BsgI GTGCAG 1 cut(s) 1077
Bsh1236I CGCG 2 cut(s) 125, 380
BshFI GGCC 3 cut(s) 5, 196, 804
BshNI GGYRCC 1 cut(s) 861
BsiHKAI GWGCWC 2 cut(s) 60, 618
BsiHKCI CYCGRG 1 cut(s) 133
BsiSI CCGG 5 cut(s) 41, 86, 321, 659, 776
BslFI GGGAC 3 cut(s) 196, 402, 560
BslI CCNNNNNNNGG 2 cut(s) 573, 1078
BsmAI GTCTC 2 cut(s) 322, 599
BsmFI GGGAC 3 cut(s) 196, 402, 560
BsnI GGCC 3 cut(s) 5, 196, 804
Bso31I GGTCTC 2 cut(s) 322, 599
BsoBI CYCGRG 1 cut(s) 133
Bsp1286I GDGCHC 2 cut(s) 60, 618
Bsp13I TCCGGA 2 cut(s) 658, 775
Bsp143I GATC 9 cut(s) 258, 661, 675, 813, 847, 985, 1014, 1020, 1075
Bsp19I CCATGG 1 cut(s) 568
BspANI GGCC 3 cut(s) 5, 196, 804
BspCNI CTCAG 3 cut(s) 387, 397, 433
BspEI TCCGGA 2 cut(s) 658, 775
BspFNI CGCG 2 cut(s) 125, 380
BspHI TCATGA 1 cut(s) 693
BspLI GGNNCC 5 cut(s) 39, 90, 863, 966, 1045
BspPI GGATC 6 cut(s) 266, 669, 821, 855, 980, 1022
BspT107I GGYRCC 1 cut(s) 861
BspTNI GGTCTC 2 cut(s) 322, 599
BsrFI RCCGGY 1 cut(s) 320
BsrI ACTGG 3 cut(s) 39, 314, 815
BssAI RCCGGY 1 cut(s) 320
BssECI CCNNGG 2 cut(s) 134, 568
BssMI GATC 9 cut(s) 258, 661, 675, 813, 847, 985, 1014, 1020, 1075
BssSI CACGAG 1 cut(s) 104
BssT1I CCWWGG 1 cut(s) 568
Bst2BI CACGAG 1 cut(s) 104
Bst2UI CCWGG 1 cut(s) 768
BstC8I GCNNGC 1 cut(s) 885
BstDEI CTNAG 5 cut(s) 395, 405, 441, 581, 857
BstDSI CCRYGG 1 cut(s) 568
BstF5I GGATG 4 cut(s) 248, 415, 439, 1087
BstFNI CGCG 2 cut(s) 125, 380
BstKTI GATC 9 cut(s) 261, 664, 678, 816, 850, 988, 1017, 1023, 1078
BstMAI GTCTC 2 cut(s) 322, 599
BstMBI GATC 9 cut(s) 258, 661, 675, 813, 847, 985, 1014, 1020, 1075
BstMWI GCNNNNNNNGC 1 cut(s) 271
BstNI CCWGG 1 cut(s) 768
BstNSI RCATGY 2 cut(s) 154, 1100
BstSCI CCNGG 2 cut(s) 84, 766
BstUI CGCG 2 cut(s) 125, 380
BstV1I GCAGC 1 cut(s) 115
BstV2I GAAGAC 1 cut(s) 207
BstX2I RGATCY 2 cut(s) 847, 1075
BstYI RGATCY 2 cut(s) 847, 1075
BsuRI GGCC 3 cut(s) 5, 196, 804
BtgI CCRYGG 1 cut(s) 568
BtsCI GGATG 4 cut(s) 248, 415, 439, 1087
BtsI GCAGTG 1 cut(s) 423
BtsIMutI CAGTG 1 cut(s) 423
Cac8I GCNNGC 1 cut(s) 885
CciI TCATGA 1 cut(s) 693
Cfr10I RCCGGY 1 cut(s) 320
Cfr13I GGNCC 2 cut(s) 4, 194
CseI GACGC 1 cut(s) 386
Csp6I GTAC 3 cut(s) 712, 862, 941
CviAII CATG 6 cut(s) 151, 353, 569, 694, 1097, 1107
CviQI GTAC 3 cut(s) 712, 862, 941
DdeI CTNAG 5 cut(s) 395, 405, 441, 581, 857
DpnI GATC 9 cut(s) 260, 663, 677, 815, 849, 987, 1016, 1022, 1077
DpnII GATC 9 cut(s) 258, 661, 675, 813, 847, 985, 1014, 1020, 1075
EciI GGCGGA 2 cut(s) 372, 1058
Eco130I CCWWGG 1 cut(s) 568
Eco31I GGTCTC 2 cut(s) 322, 599
Eco88I CYCGRG 1 cut(s) 133
EcoRI GAATTC 1 cut(s) 931
EcoRII CCWGG 1 cut(s) 766
EcoT14I CCWWGG 1 cut(s) 568
ErhI CCWWGG 1 cut(s) 568
FaeI CATG 6 cut(s) 154, 356, 572, 697, 1100, 1110
FaqI GGGAC 3 cut(s) 196, 402, 560
FatI CATG 6 cut(s) 150, 352, 568, 693, 1096, 1106
FauI CCCGC 1 cut(s) 317
Fnu4HI GCNGC 6 cut(s) 48, 51, 98, 126, 129, 1042
FokI GGATG 4 cut(s) 255, 422, 446, 1074
Fsp4HI GCNGC 6 cut(s) 48, 51, 98, 126, 129, 1042
FspBI CTAG 3 cut(s) 554, 851, 1073
GluI GCNGC 6 cut(s) 48, 51, 98, 126, 129, 1042
HaeIII GGCC 3 cut(s) 5, 196, 804
HapII CCGG 5 cut(s) 41, 86, 321, 659, 776
HgaI GACGC 1 cut(s) 386
Hin1II CATG 6 cut(s) 154, 356, 572, 697, 1100, 1110
HindIII AAGCTT 1 cut(s) 362
HinfI GANTC 7 cut(s) 74, 215, 228, 267, 281, 293, 339
HpaII CCGG 5 cut(s) 41, 86, 321, 659, 776
Hpy166II GTNNAC 3 cut(s) 597, 941, 952
Hpy188I TCNGA 5 cut(s) 166, 338, 666, 875, 1025
Hpy8I GTNNAC 3 cut(s) 597, 941, 952
HpyAV CCTTC 2 cut(s) 794, 953
HpyCH4IV ACGT 1 cut(s) 204
HpyCH4V TGCA 1 cut(s) 1094
HpyF10VI GCNNNNNNNGC 1 cut(s) 271
HpyF3I CTNAG 5 cut(s) 395, 405, 441, 581, 857
HpySE526I ACGT 1 cut(s) 204
Hsp92II CATG 6 cut(s) 154, 356, 572, 697, 1100, 1110
Kpn2I TCCGGA 2 cut(s) 658, 775
KpnI GGTACC 1 cut(s) 865
Kzo9I GATC 9 cut(s) 258, 661, 675, 813, 847, 985, 1014, 1020, 1075
LmnI GCTCC 6 cut(s) 63, 94, 413, 421, 738, 1049
Lsp1109I GCAGC 1 cut(s) 115
LweI GCATC 1 cut(s) 499
MaeI CTAG 3 cut(s) 554, 851, 1073
MaeII ACGT 1 cut(s) 204
MaeIII GTNAC 3 cut(s) 146, 576, 996
MalI GATC 9 cut(s) 260, 663, 677, 815, 849, 987, 1016, 1022, 1077
MboI GATC 9 cut(s) 258, 661, 675, 813, 847, 985, 1014, 1020, 1075
MboII GAAGA 4 cut(s) 212, 670, 742, 940
MflI RGATCY 2 cut(s) 847, 1075
MhlI GDGCHC 2 cut(s) 60, 618
MluCI AATT 4 cut(s) 452, 667, 931, 1027
MlyI GAGTC 5 cut(s) 68, 276, 287, 290, 333
MmeI TCCRAC 1 cut(s) 144
MroI TCCGGA 2 cut(s) 658, 775
MseI TTAA 2 cut(s) 11, 315
MslI CAYNNNNRTG 1 cut(s) 351
MspI CCGG 5 cut(s) 41, 86, 321, 659, 776
MspR9I CCNGG 2 cut(s) 86, 768
MvaI CCWGG 1 cut(s) 768
MvnI CGCG 2 cut(s) 125, 380
MwoI GCNNNNNNNGC 1 cut(s) 271
NciI CCSGG 1 cut(s) 86
NcoI CCATGG 1 cut(s) 568
NdeII GATC 9 cut(s) 258, 661, 675, 813, 847, 985, 1014, 1020, 1075
NlaIII CATG 6 cut(s) 154, 356, 572, 697, 1100, 1110
NlaIV GGNNCC 5 cut(s) 39, 90, 863, 966, 1045
NmuCI GTSAC 2 cut(s) 146, 996
NspI RCATGY 2 cut(s) 154, 1100
PagI TCATGA 1 cut(s) 693
PcsI WCGNNNNNNNCGW 1 cut(s) 78
PfeI GAWTC 2 cut(s) 215, 228
PkrI GCNGC 6 cut(s) 49, 52, 99, 127, 130, 1043
PleI GAGTC 5 cut(s) 68, 275, 287, 289, 333
PpsI GAGTC 5 cut(s) 68, 275, 287, 289, 333
Psp6I CCWGG 1 cut(s) 766
PspGI CCWGG 1 cut(s) 766
PspN4I GGNNCC 5 cut(s) 39, 90, 863, 966, 1045
PspPI GGNCC 2 cut(s) 4, 194
PsuI RGATCY 2 cut(s) 847, 1075
RsaI GTAC 3 cut(s) 713, 863, 942
RsaNI GTAC 3 cut(s) 712, 862, 941
RseI CAYNNNNRTG 1 cut(s) 351
SaqAI TTAA 2 cut(s) 11, 315
SatI GCNGC 6 cut(s) 48, 51, 98, 126, 129, 1042
Sau3AI GATC 9 cut(s) 258, 661, 675, 813, 847, 985, 1014, 1020, 1075
Sau96I GGNCC 2 cut(s) 4, 194
ScaI AGTACT 1 cut(s) 713
SchI GAGTC 5 cut(s) 68, 276, 287, 290, 333
ScrFI CCNGG 2 cut(s) 86, 768
SduI GDGCHC 2 cut(s) 60, 618
SfaNI GCATC 1 cut(s) 499
SmiMI CAYNNNNRTG 1 cut(s) 351
Sse9I AATT 4 cut(s) 452, 667, 931, 1027
SspMI CTAG 3 cut(s) 554, 851, 1073
StyD4I CCNGG 2 cut(s) 84, 766
StyI CCWWGG 1 cut(s) 568
TaiI ACGT 1 cut(s) 207
TaqI TCGA 2 cut(s) 72, 81
TasI AATT 4 cut(s) 452, 667, 931, 1027
TatI WGTACW 2 cut(s) 711, 940
TauI GCSGC 5 cut(s) 50, 53, 100, 128, 1044
TfiI GAWTC 2 cut(s) 215, 228
Tru1I TTAA 2 cut(s) 11, 315
Tru9I TTAA 2 cut(s) 11, 315
TscAI CASTG 1 cut(s) 423
TseFI GTSAC 2 cut(s) 146, 996
TseI GCWGC 1 cut(s) 128
Tsp45I GTSAC 2 cut(s) 146, 996
TspDTI ATGAA 5 cut(s) 504, 529, 682, 710, 742
TspGWI ACGGA 2 cut(s) 446, 582
TspRI CASTG 1 cut(s) 423
XapI RAATTY 2 cut(s) 452, 931
XbaI TCTAGA 1 cut(s) 553
XceI RCATGY 2 cut(s) 154, 1100
XspI CTAG 3 cut(s) 554, 851, 1073
ZrmI AGTACT 1 cut(s) 713
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.