Basic Information

Type: gene

Biological Identity

Species

arabidopsis_thaliana

Chromosome

Orthogroup ID

OG0000797

Physical Location & Seq

Genomic Coordinates Forward (+)

19086344 .. 19088150

Gene Structure 1807 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

AT3G51430.2

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1116 bp

ATGCCTATGTTCTACTCCTCTCGTTTTCTCTTCTTCTTCACCATCGTCCCCTTACTCGTCTCTATCGCTCTCTACCAACTCGACACATTTGACCCAGCTCCGGTTCCTTCCGAGGCATACGCCTCCTCTACTACTTCAATCCCGCCGCTTATCAGCGACAAATATCTCACCGGAGCTGAGTTTATTGGCGTCGGTCTTCTCGATAAACCCGAAGATATCGCCTATCATCAAGACTCTAATCTCATATATACTGGCTGCATAGATGGATGGGTGAAACGAGTCAGTGTCCACGACTCAGCTAATGACTCAGTCGTTGAGGATTGGGTCAATACCGGTGGTAGACCGCTCGGAATCGCTTTCGGAGTCCACGGCGAAGTCATTGTGGCAGACGCATACAAGGGACTGTTGAACATAAGTGGTGACGGGAAGAAGACGGAATTATTGACGGATCAAGCGGAAGGCGTTAAATTTAAGCTGACTGATGTAGTCGCCGTTGCAGATAACGGCGTTTTGTATTTCACTGATGCTTCTTACAAGTACACTCTGCATCAAGTCAAGTTTGACATTTTGGAAGGTAAACCACATGGCCGTCTCATGAGCTTTGATCCCACCACACGTGTTACACGTGTACTTCTCAAAGACCTTTACTTCGCTAATGGCGTCTCCATGTCTCCTGATCAAACGCATCTCATCTTCTGTGAAACTCCCATGAGACGATGCAGCAAGTATTACATTAATGAAGAGCGTGTAGAGGTGTTTATTCAAGGCTTACCAGGTTATCCAGATAACATTCGGTACGACGGAGATGGCCATTACTGGATTGCTATGGTTTCGGGAGCATCAACGTTGTGGAGGCTCTCGATGAAATACCCTTTCTTGAGGAAAATCACAGCCATAGCGGCTAAGTATGGCGTGGAACTTATGTTCATGAAGAATGCAGGTGTTCTGCAGGTGGATTTGGATGGGAATCCCATCGCTTACTACCATGATCAGAGACTCTCTCACATTACCACCGGTATCAAGATTGGGAACTATCTCTATTGTGGAAATATCTTGCATTCGTACATTATCCGACTCGATCTCCTGAAGTATCCTGCACAGAAGAAGAAGCTTTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0001101 GO:0003674 GO:0003824 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005783 GO:0006950 GO:0008150 GO:0009605 GO:0009607 GO:0009611 GO:0009615 GO:0009620 GO:0009719 GO:0009723 GO:0009725 GO:0009751 GO:0009753 GO:0010033 GO:0012505 GO:0014070 GO:0016020 GO:0016787 GO:0016788 GO:0042221 GO:0042493 GO:0043207 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044424 GO:0044444 GO:0044464 GO:0046677 GO:0050896 GO:0051704 GO:0051707 GO:1901700

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

Str_synth

Protein Analysis

371

Amino Acids

41.64

Weight (kDa)

6.2

Isoelectric Point (pI)

31.65

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
SGL	PF08450	78 - 286	5e-14	SMP-30/Gluconolactonase/LRE-like region
Str_synth	PF03088	162 - 248	6.7e-38	Strictosidine synthase

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0000797)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT3G51420 AT3G51430 AT3G51430 AT3G51440 AT3G51450
fragaria_vesca	FvH4_1g10570 FvH4_1g10571 FvH4_1g10572
malus_domestica	MD02G1119800.v1.1 MD02G1119900.v1.1
prunus_persica	Prupe.7G178800_v2.0.a1 Prupe.7G179100_v2.0.a1
pyrus_communis	pycom02g09330 pycom02g09340 pycom02g09350 pycom15g20840
rosa_chinensis	RchiOBHm_Chr2g0097641 RchiOBHm_Chr2g0173351 RchiOBHm_Chr3g0449291 RchiOBHm_Chr3g0492501 RchiOBHm_Chr3g0492521 RchiOBHm_Chr3g0492531
rosa_laevigata	RLG00000016730 RLG00000016731 RLG00000022762 RLG00000025842
rosa_multiflora	Rmu_co8425041.1_g000001 Rmu_sc0000971.1_g000010 Rmu_sc0000971.1_g000016 Rmu_sc0004874.1_g000001 Rmu_sc0010088.1_g000002 Rmu_sc0010088.1_g000009 Rmu_sc0016955.1_g000001 Rmu_sc0020190.1_g000005 Rmu_sc0026896.1_g000001 Rmu_ssc0000282.1_g000007
rosa_roxburghii	Rroxscaffold_2G00144630 Rroxscaffold_2G00144640 Rroxscaffold_6G00392230 Rroxscaffold_6G00427290
rosa_rugosa	Rorug02G0068000 Rorug02G0068100 Rorug02G0619400 Rorug02G0619400 Rorug03G0254300
rosa_samantha	Rh2AG114400 Rh2AG114500 Rh2AG647900 Rh2BG117100 Rh2BG117300 Rh2BG658400 Rh2CG119100 Rh2CG119300 Rh2DG118100 Rh2DG673800 Rh3AG017400 Rh3AG304700 Rh3BG017500 Rh3BG340600 Rh3CG016500 Rh3CG338000 Rh3CG338100 Rh3DG017800 Rh3DG339800
rosa_wichuraiana	Rw2G008940 Rw2G008960 Rw2G053190 Rw3G001330 Rw3G026840

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AarI	CACCTGC	2 cut(s)	929, 940
Acc36I	ACCTGC	2 cut(s)	929, 940
AccBSI	CCGCTC	1 cut(s)	346
AccI	GTMKAC	1 cut(s)	340
AciI	CCGC	5 cut(s)	143, 146, 344, 455, 899
AclI	AACGTT	1 cut(s)	845
AclWI	GGATC	2 cut(s)	456, 599
AcoI	YGGCCR	2 cut(s)	586, 808
AcsI	RAATTY	1 cut(s)	467
AcuI	CTGAAG	1 cut(s)	1106
AcvI	CACGTG	2 cut(s)	617, 626
AcyI	GRCGYC	2 cut(s)	189, 660
AfaI	GTAC	4 cut(s)	539, 630, 797, 1064
AfiI	CCNNNNNNNGG	1 cut(s)	100
AflIII	ACRYGT	4 cut(s)	614, 616, 623, 625
AgeI	ACCGGT	2 cut(s)	332, 1013
AgsI	TTSAA	3 cut(s)	138, 409, 764
AjnI	CCWGG	1 cut(s)	772
AloI	GAACNNNNNNTCC	2 cut(s)	908, 940
AluBI	AGCT	6 cut(s)	98, 176, 299, 475, 600, 1111
AluI	AGCT	6 cut(s)	98, 176, 299, 475, 600, 1111
Alw26I	GTCTC	6 cut(s)	64, 596, 667, 675, 706, 988
AlwI	GGATC	2 cut(s)	456, 599
AoxI	GGCC	2 cut(s)	586, 808
ApeKI	GCWGC	2 cut(s)	255, 720
ApoI	RAATTY	1 cut(s)	467
ArsI	GACNNNNNNTTYG	2 cut(s)	632, 664
AseI	ATTAAT	1 cut(s)	735
AsiGI	ACCGGT	2 cut(s)	332, 1013
AsuHPI	GGTGA	4 cut(s)	31, 160, 283, 431
BalI	TGGCCA	1 cut(s)	810
BbrPI	CACGTG	2 cut(s)	617, 626
BbsI	GAAGAC	2 cut(s)	188, 437
BbvI	GCAGC	2 cut(s)	242, 732
BccI	CCATC	6 cut(s)	50, 257, 261, 800, 956, 980
BceAI	ACGGC	4 cut(s)	385, 476, 520, 573
BciT130I	CCWGG	1 cut(s)	774
BciVI	GTATCC	1 cut(s)	1101
BclI	TGATCA	2 cut(s)	676, 988
BcoDI	GTCTC	6 cut(s)	64, 596, 667, 675, 706, 988
BfmI	CTRYAG	1 cut(s)	947
BfuAI	ACCTGC	2 cut(s)	929, 940
BfuI	GTATCC	1 cut(s)	1101
BglI	GCCNNNNNGGC	1 cut(s)	899
BisI	GCNGC	4 cut(s)	146, 256, 721, 900
BlsI	GCNGC	4 cut(s)	147, 257, 722, 901
Bme1390I	CCNGG	1 cut(s)	774
BmiI	GGNNCC	1 cut(s)	105
BmrFI	CCNGG	1 cut(s)	774
BmsI	GCATC	5 cut(s)	514, 556, 694, 707, 848
BpiI	GAAGAC	2 cut(s)	188, 437
BplI	GAGNNNNNCTC	2 cut(s)	985, 1017
BpuEI	CTTGAG	1 cut(s)	898
BsaAI	YACGTR	2 cut(s)	617, 626
BsaBI	GATNNNNATC	1 cut(s)	966
BsaHI	GRCGYC	2 cut(s)	189, 660
BsaJI	CCNNGG	2 cut(s)	111, 367
BsaWI	WCCGGW	4 cut(s)	100, 170, 332, 1013
BsaXI	ACNNNNNCTCC	2 cut(s)	1065, 1095
Bsc4I	CCNNNNNNNGG	1 cut(s)	100
Bse118I	RCCGGY	2 cut(s)	332, 1013
Bse1I	ACTGG	2 cut(s)	256, 821
Bse8I	GATNNNNATC	1 cut(s)	966
BseBI	CCWGG	1 cut(s)	774
BseDI	CCNNGG	2 cut(s)	111, 367
BseGI	GGATG	2 cut(s)	272, 967
BseJI	GATNNNNATC	1 cut(s)	966
BseLI	CCNNNNNNNGG	1 cut(s)	100
BseMII	CTCAG	3 cut(s)	168, 309, 321
BseNI	ACTGG	2 cut(s)	256, 821
BseRI	GAGGAG	2 cut(s)	7, 115
BseXI	GCAGC	2 cut(s)	242, 732
BseYI	CCCAGC	1 cut(s)	94
BsgI	GTGCAG	1 cut(s)	1080
BshFI	GGCC	2 cut(s)	588, 810
BshTI	ACCGGT	2 cut(s)	332, 1013
BsiSI	CCGG	4 cut(s)	101, 171, 333, 1014
BslFI	GGGAC	2 cut(s)	32, 414
BslI	CCNNNNNNNGG	1 cut(s)	100
BsmAI	GTCTC	6 cut(s)	64, 596, 667, 675, 706, 988
BsmBI	CGTCTC	4 cut(s)	64, 596, 667, 706
BsmFI	GGGAC	2 cut(s)	32, 414
BsmI	GAATGC	2 cut(s)	940, 1057
BsnI	GGCC	2 cut(s)	588, 810
Bsp143I	GATC	5 cut(s)	448, 604, 676, 988, 1078
BspACI	CCGC	5 cut(s)	143, 146, 344, 455, 899
BspANI	GGCC	2 cut(s)	588, 810
BspCNI	CTCAG	3 cut(s)	169, 308, 320
BspHI	TCATGA	2 cut(s)	594, 927
BspLI	GGNNCC	1 cut(s)	105
BspMAI	CTGCAG	1 cut(s)	951
BspMI	ACCTGC	2 cut(s)	929, 940
BspPI	GGATC	2 cut(s)	456, 599
BspQI	GCTCTTC	1 cut(s)	735
BsrBI	CCGCTC	1 cut(s)	346
BsrFI	RCCGGY	2 cut(s)	332, 1013
BsrI	ACTGG	2 cut(s)	256, 821
BssAI	RCCGGY	2 cut(s)	332, 1013
BssECI	CCNNGG	2 cut(s)	111, 367
BssMI	GATC	5 cut(s)	448, 604, 676, 988, 1078
BssNI	GRCGYC	2 cut(s)	189, 660
Bst2UI	CCWGG	1 cut(s)	774
Bst4CI	ACNGT	1 cut(s)	405
Bst6I	CTCTTC	2 cut(s)	35, 735
BstACI	GRCGYC	2 cut(s)	189, 660
BstBAI	YACGTR	2 cut(s)	617, 626
BstDEI	CTNAG	4 cut(s)	177, 295, 307, 903
BstDSI	CCRYGG	1 cut(s)	367
BstF5I	GGATG	2 cut(s)	272, 967
BstKTI	GATC	5 cut(s)	451, 607, 679, 991, 1081
BstMAI	GTCTC	6 cut(s)	64, 596, 667, 675, 706, 988
BstMBI	GATC	5 cut(s)	448, 604, 676, 988, 1078
BstMWI	GCNNNNNNNGC	1 cut(s)	899
BstNI	CCWGG	1 cut(s)	774
BstSCI	CCNGG	1 cut(s)	772
BstSFI	CTRYAG	1 cut(s)	947
BstV1I	GCAGC	2 cut(s)	242, 732
BstV2I	GAAGAC	2 cut(s)	188, 437
BsuI	GTATCC	1 cut(s)	1101
BsuRI	GGCC	2 cut(s)	588, 810
BtgI	CCRYGG	1 cut(s)	367
BtgZI	GCGATG	1 cut(s)	958
BtsCI	GGATG	2 cut(s)	272, 967
BtsIMutI	CAGTG	2 cut(s)	289, 519
BveI	ACCTGC	2 cut(s)	929, 940
CciI	TCATGA	2 cut(s)	594, 927
Cfr10I	RCCGGY	2 cut(s)	332, 1013
CseI	GACGC	3 cut(s)	178, 398, 649
CsiI	ACCWGGT	1 cut(s)	772
Csp6I	GTAC	4 cut(s)	538, 629, 796, 1063
CspAI	ACCGGT	2 cut(s)	332, 1013
CspCI	CAANNNNNGTGG	2 cut(s)	316, 351
CviAII	CATG	6 cut(s)	584, 595, 667, 709, 928, 986
CviQI	GTAC	4 cut(s)	538, 629, 796, 1063
DdeI	CTNAG	4 cut(s)	177, 295, 307, 903
DpnI	GATC	5 cut(s)	450, 606, 678, 990, 1080
DpnII	GATC	5 cut(s)	448, 604, 676, 988, 1078
EaeI	YGGCCR	2 cut(s)	586, 808
Eam1104I	CTCTTC	2 cut(s)	35, 735
EarI	CTCTTC	2 cut(s)	35, 735
Eco32I	GATATC	1 cut(s)	217
Eco57I	CTGAAG	1 cut(s)	1106
Eco72I	CACGTG	2 cut(s)	617, 626
EcoRII	CCWGG	1 cut(s)	772
EcoRV	GATATC	1 cut(s)	217
Esp3I	CGTCTC	4 cut(s)	64, 596, 667, 706
FaeI	CATG	6 cut(s)	587, 598, 670, 712, 931, 989
FaqI	GGGAC	2 cut(s)	32, 414
FatI	CATG	6 cut(s)	583, 594, 666, 708, 927, 985
FauI	CCCGC	1 cut(s)	150
FbaI	TGATCA	2 cut(s)	676, 988
FblI	GTMKAC	1 cut(s)	340
Fnu4HI	GCNGC	4 cut(s)	146, 256, 721, 900
FokI	GGATG	2 cut(s)	279, 974
Fsp4HI	GCNGC	4 cut(s)	146, 256, 721, 900
GluI	GCNGC	4 cut(s)	146, 256, 721, 900
GsaI	CCCAGC	1 cut(s)	98
HaeIII	GGCC	2 cut(s)	588, 810
HapII	CCGG	4 cut(s)	101, 171, 333, 1014
HgaI	GACGC	3 cut(s)	178, 398, 649
Hin1I	GRCGYC	2 cut(s)	189, 660
Hin1II	CATG	6 cut(s)	587, 598, 670, 712, 931, 989
HindIII	AAGCTT	1 cut(s)	1109
HinfI	GANTC	9 cut(s)	233, 279, 293, 305, 351, 363, 967, 996, 1074
HpaII	CCGG	4 cut(s)	101, 171, 333, 1014
HphI	GGTGA	4 cut(s)	31, 160, 283, 431
Hpy166II	GTNNAC	6 cut(s)	289, 341, 367, 540, 578, 629
Hpy188I	TCNGA	5 cut(s)	112, 350, 362, 993, 1073
Hpy8I	GTNNAC	6 cut(s)	289, 341, 367, 540, 578, 629
Hpy99I	CGWCG	2 cut(s)	194, 803
HpyAV	CCTTC	3 cut(s)	117, 452, 566
HpyCH4III	ACNGT	1 cut(s)	405
HpyCH4IV	ACGT	3 cut(s)	616, 625, 845
HpyCH4V	TGCA	8 cut(s)	258, 497, 547, 720, 938, 949, 1057, 1097
HpyF10VI	GCNNNNNNNGC	1 cut(s)	899
HpyF3I	CTNAG	4 cut(s)	177, 295, 307, 903
HpySE526I	ACGT	3 cut(s)	616, 625, 845
Hsp92I	GRCGYC	2 cut(s)	189, 660
Hsp92II	CATG	6 cut(s)	587, 598, 670, 712, 931, 989
Ksp22I	TGATCA	2 cut(s)	676, 988
Kzo9I	GATC	5 cut(s)	448, 604, 676, 988, 1078
LguI	GCTCTTC	1 cut(s)	735
LmnI	GCTCC	3 cut(s)	103, 173, 836
Lsp1109I	GCAGC	2 cut(s)	242, 732
LweI	GCATC	5 cut(s)	514, 556, 694, 707, 848
MabI	ACCWGGT	1 cut(s)	772
MaeII	ACGT	3 cut(s)	616, 625, 845
MaeIII	GTNAC	2 cut(s)	419, 619
MalI	GATC	5 cut(s)	450, 606, 678, 990, 1080
MbiI	CCGCTC	1 cut(s)	346
MboI	GATC	5 cut(s)	448, 604, 676, 988, 1078
MlsI	TGGCCA	1 cut(s)	810
MluCI	AATT	2 cut(s)	437, 467
MluNI	TGGCCA	1 cut(s)	810
MlyI	GAGTC	7 cut(s)	227, 287, 288, 299, 372, 990, 1068
MmeI	TCCRAC	1 cut(s)	1096
MnlI	CCTC	8 cut(s)	28, 106, 133, 136, 310, 745, 846, 873
Mox20I	TGGCCA	1 cut(s)	810
MscI	TGGCCA	1 cut(s)	810
MseI	TTAA	3 cut(s)	465, 471, 735
Msp20I	TGGCCA	1 cut(s)	810
MspI	CCGG	4 cut(s)	101, 171, 333, 1014
MspR9I	CCNGG	1 cut(s)	774
Mva1269I	GAATGC	2 cut(s)	940, 1057
MvaI	CCWGG	1 cut(s)	774
MwoI	GCNNNNNNNGC	1 cut(s)	899
NdeII	GATC	5 cut(s)	448, 604, 676, 988, 1078
NlaIII	CATG	6 cut(s)	587, 598, 670, 712, 931, 989
NlaIV	GGNNCC	1 cut(s)	105
NmuCI	GTSAC	1 cut(s)	419
PagI	TCATGA	2 cut(s)	594, 927
PaqCI	CACCTGC	2 cut(s)	929, 940
PciSI	GCTCTTC	1 cut(s)	735
PcsI	WCGNNNNNNNCGW	4 cut(s)	198, 207, 622, 657
PctI	GAATGC	2 cut(s)	940, 1057
PfeI	GAWTC	2 cut(s)	351, 967
PflFI	GACNNNGTC	1 cut(s)	308
PinAI	ACCGGT	2 cut(s)	332, 1013
PkrI	GCNGC	4 cut(s)	147, 257, 722, 901
PleI	GAGTC	7 cut(s)	227, 287, 287, 299, 371, 990, 1068
PmaCI	CACGTG	2 cut(s)	617, 626
PmlI	CACGTG	2 cut(s)	617, 626
PpsI	GAGTC	7 cut(s)	227, 287, 287, 299, 371, 990, 1068
Ppu21I	YACGTR	2 cut(s)	617, 626
PshBI	ATTAAT	1 cut(s)	735
Psp1406I	AACGTT	1 cut(s)	845
Psp6I	CCWGG	1 cut(s)	772
PspCI	CACGTG	2 cut(s)	617, 626
PspFI	CCCAGC	1 cut(s)	94
PspGI	CCWGG	1 cut(s)	772
PspN4I	GGNNCC	1 cut(s)	105
PstI	CTGCAG	1 cut(s)	951
PsyI	GACNNNGTC	1 cut(s)	308
RsaI	GTAC	4 cut(s)	539, 630, 797, 1064
RsaNI	GTAC	4 cut(s)	538, 629, 796, 1063
SapI	GCTCTTC	1 cut(s)	735
SaqAI	TTAA	3 cut(s)	465, 471, 735
SatI	GCNGC	4 cut(s)	146, 256, 721, 900
Sau3AI	GATC	5 cut(s)	448, 604, 676, 988, 1078
SchI	GAGTC	7 cut(s)	227, 287, 288, 299, 372, 990, 1068
ScrFI	CCNGG	1 cut(s)	774
SexAI	ACCWGGT	1 cut(s)	772
SfaNI	GCATC	5 cut(s)	514, 556, 694, 707, 848
SfcI	CTRYAG	1 cut(s)	947
SmlI	CTYRAG	1 cut(s)	877
SmoI	CTYRAG	1 cut(s)	877
Sse9I	AATT	2 cut(s)	437, 467
SsiI	CCGC	5 cut(s)	143, 146, 344, 455, 899
StyD4I	CCNGG	1 cut(s)	772
TaaI	ACNGT	1 cut(s)	405
TaiI	ACGT	3 cut(s)	619, 628, 848
TaqI	TCGA	4 cut(s)	81, 201, 860, 1077
TaqII	GACCGA	1 cut(s)	182
TasI	AATT	2 cut(s)	437, 467
TatI	WGTACW	2 cut(s)	537, 628
TauI	GCSGC	2 cut(s)	148, 902
TfiI	GAWTC	2 cut(s)	351, 967
Tru1I	TTAA	3 cut(s)	465, 471, 735
Tru9I	TTAA	3 cut(s)	465, 471, 735
TscAI	CASTG	2 cut(s)	289, 526
TseFI	GTSAC	1 cut(s)	419
TseI	GCWGC	2 cut(s)	255, 720
Tsp45I	GTSAC	1 cut(s)	419
TspDTI	ATGAA	4 cut(s)	753, 878, 916, 944
TspGWI	ACGGA	3 cut(s)	449, 461, 816
TspRI	CASTG	2 cut(s)	289, 526
Tth111I	GACNNNGTC	1 cut(s)	308
VspI	ATTAAT	1 cut(s)	735
XapI	RAATTY	1 cut(s)	467
XmiI	GTMKAC	1 cut(s)	340

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.