RchiOBHm_Chr3g0492521

Adipocyte plasma membrane-associated

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_chinensis
3
OG0000797
Physical Location & Seq
Forward (+)
39306579 .. 39308286
1708 bp
Loading structure...
UTR
Exon/CDS
Intron
PRQ45541

Sequence Viewer

Length: 768 bp
ATGTGGGTTATTAACCAAATGTGGGATATACTAAATACTAATCAGGGACTACTGAGAATAGCTGAGGATGGAGCAGTGGAGCTGCTGACGGATGAGGCTGAGGGTGTAAAATTCAAACTAACAGATTGTGTAGATGTAGCGAAAGATGGTATGATTTACTTCACAGATGCTTCATATAAAAACGGCTTACAAGACTTCATCTGGGACTTTCTAGAGGGCAGACCCCATGGTAGGTTACTAAGCTACAATCCGTTTACCAAAGAGACCAAAGTGCTCATTCGCAACCTCTACTTTGCTAATGGAGTAGCACTCTCTCCAGATCAGAATTATGTGATCTTCTGCGAAACTTTCATGAAAAGATGTAGAAAGTACTACCTACAAGGCGAGAAGAAAGGGAGCATAGAGAACTTCATTGACAACTTGCCAGGCTCTCCGGATAATATACGATATGATGGGGAAGGCCATTACTGGATCGCAATACCTATGGGGACTTCAGTTATTTTGGATCTAGCACTTAGGTACCCTTTTATCCGAAAAGGGCTGGCAATCGTGGAGAAGTATATATTGAGCAGACCATATAAGGAGAAGAATTCTGGTGTACTTGCTGTGAACTTGGAAGGGGAACCTACTGCCCATTATTTTGATCCAGATTTGTCACTCATTACAAGTGGGATCAAGATCGGAAACTACCTCTACTGTGGCTCCGTTCTCAATCCATACATTATCCGCCTAGATCTGGAACAACATCCTGCACATGCCACTACATGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
GO:0003674 GO:0003824 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005783 GO:0012505 GO:0016020 GO:0016787 GO:0016788 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044424 GO:0044444 GO:0044464
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
Str_synth

Protein Analysis

255

Amino Acids

29.07

Weight (kDa)

5.43

Isoelectric Point (pI)

25.52

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
SGL PF08450 13 - 167 5.3e-12 SMP-30/Gluconolactonase/LRE-like region
Str_synth PF03088 43 - 128 3.3e-32 Strictosidine synthase
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
Loading...
Style Settings
Image
Tree File
Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready
iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
Acc65I GGTACC 1 cut(s) 519
AccB1I GGYRCC 1 cut(s) 519
AccIII TCCGGA 1 cut(s) 433
AciI CCGC 1 cut(s) 727
AclWI GGATC 4 cut(s) 479, 513, 638, 680
AcsI RAATTY 2 cut(s) 110, 589
AcuI CTGAAG 1 cut(s) 477
AfaI GTAC 3 cut(s) 371, 521, 600
AfiI CCNNNNNNNGG 3 cut(s) 22, 231, 736
AgsI TTSAA 1 cut(s) 115
AjnI CCWGG 1 cut(s) 424
AluBI AGCT 3 cut(s) 62, 82, 243
AluI AGCT 3 cut(s) 62, 82, 243
Alw21I GWGCWC 1 cut(s) 276
Alw26I GTCTC 1 cut(s) 257
AlwI GGATC 4 cut(s) 479, 513, 638, 680
Aor13HI TCCGGA 1 cut(s) 433
AoxI GGCC 1 cut(s) 460
ApeKI GCWGC 1 cut(s) 82
ApoI RAATTY 2 cut(s) 110, 589
Asp718I GGTACC 1 cut(s) 519
BaeI ACNNNNGTAYC 2 cut(s) 503, 536
BanI GGYRCC 1 cut(s) 519
Bbv12I GWGCWC 1 cut(s) 276
BbvCI CCTCAGC 2 cut(s) 63, 99
BbvI GCAGC 1 cut(s) 69
BccI CCATC 3 cut(s) 62, 140, 446
BceAI ACGGC 1 cut(s) 199
BciT130I CCWGG 1 cut(s) 426
BcoDI GTCTC 1 cut(s) 257
BfaI CTAG 3 cut(s) 212, 509, 731
BglII AGATCT 1 cut(s) 733
BisI GCNGC 1 cut(s) 83
BlsI GCNGC 1 cut(s) 84
BmcAI AGTACT 1 cut(s) 371
Bme1390I CCNGG 1 cut(s) 426
BmiI GGNNCC 3 cut(s) 521, 624, 703
BmrFI CCNGG 1 cut(s) 426
BmsI GCATC 1 cut(s) 157
BplI GAGNNNNNCTC 2 cut(s) 294, 326
BpmI CTGGAG 1 cut(s) 300
Bpu10I CCTNAGC 2 cut(s) 63, 99
BsaBI GATNNNNATC 1 cut(s) 677
BsaI GGTCTC 1 cut(s) 257
BsaJI CCNNGG 1 cut(s) 226
BsaWI WCCGGW 1 cut(s) 433
BsaXI ACNNNNNCTCC 2 cut(s) 686, 716
Bsc4I CCNNNNNNNGG 3 cut(s) 22, 231, 736
Bse1I ACTGG 1 cut(s) 473
Bse8I GATNNNNATC 1 cut(s) 677
BseAI TCCGGA 1 cut(s) 433
BseBI CCWGG 1 cut(s) 426
BseDI CCNNGG 1 cut(s) 226
BseGI GGATG 3 cut(s) 73, 97, 745
BseJI GATNNNNATC 1 cut(s) 677
BseLI CCNNNNNNNGG 3 cut(s) 22, 231, 736
BseMII CTCAG 3 cut(s) 44, 54, 90
BseNI ACTGG 1 cut(s) 473
BseXI GCAGC 1 cut(s) 69
BsgI GTGCAG 1 cut(s) 735
BshFI GGCC 1 cut(s) 462
BshNI GGYRCC 1 cut(s) 519
BsiHKAI GWGCWC 1 cut(s) 276
BsiSI CCGG 1 cut(s) 434
BslFI GGGAC 3 cut(s) 60, 218, 502
BslI CCNNNNNNNGG 3 cut(s) 22, 231, 736
BsmAI GTCTC 1 cut(s) 257
BsmFI GGGAC 3 cut(s) 60, 218, 502
BsnI GGCC 1 cut(s) 462
Bso31I GGTCTC 1 cut(s) 257
Bsp1286I GDGCHC 1 cut(s) 276
Bsp13I TCCGGA 1 cut(s) 433
Bsp143I GATC 8 cut(s) 319, 333, 471, 505, 643, 672, 678, 733
Bsp19I CCATGG 1 cut(s) 226
BspACI CCGC 1 cut(s) 727
BspANI GGCC 1 cut(s) 462
BspCNI CTCAG 3 cut(s) 45, 55, 91
BspEI TCCGGA 1 cut(s) 433
BspHI TCATGA 1 cut(s) 351
BspLI GGNNCC 3 cut(s) 521, 624, 703
BspPI GGATC 4 cut(s) 479, 513, 638, 680
BspT107I GGYRCC 1 cut(s) 519
BspTNI GGTCTC 1 cut(s) 257
BsrI ACTGG 1 cut(s) 473
BssECI CCNNGG 1 cut(s) 226
BssMI GATC 8 cut(s) 319, 333, 471, 505, 643, 672, 678, 733
BssT1I CCWWGG 1 cut(s) 226
Bst2UI CCWGG 1 cut(s) 426
Bst4CI ACNGT 1 cut(s) 698
BstC8I GCNNGC 1 cut(s) 543
BstDEI CTNAG 5 cut(s) 53, 63, 99, 239, 515
BstDSI CCRYGG 1 cut(s) 226
BstF5I GGATG 3 cut(s) 73, 97, 745
BstKTI GATC 8 cut(s) 322, 336, 474, 508, 646, 675, 681, 736
BstMAI GTCTC 1 cut(s) 257
BstMBI GATC 8 cut(s) 319, 333, 471, 505, 643, 672, 678, 733
BstNI CCWGG 1 cut(s) 426
BstNSI RCATGY 1 cut(s) 758
BstSCI CCNGG 1 cut(s) 424
BstV1I GCAGC 1 cut(s) 69
BstX2I RGATCY 2 cut(s) 505, 733
BstYI RGATCY 2 cut(s) 505, 733
BsuRI GGCC 1 cut(s) 462
BtgI CCRYGG 1 cut(s) 226
BtsCI GGATG 3 cut(s) 73, 97, 745
BtsI GCAGTG 1 cut(s) 81
BtsIMutI CAGTG 1 cut(s) 81
Cac8I GCNNGC 1 cut(s) 543
CciI TCATGA 1 cut(s) 351
Csp6I GTAC 3 cut(s) 370, 520, 599
CviAII CATG 4 cut(s) 227, 352, 755, 765
CviJI RGCY 9 cut(s) 62, 82, 98, 186, 243, 429, 462, 541, 702
CviKI_1 RGCY 9 cut(s) 62, 82, 98, 186, 243, 429, 462, 541, 702
CviQI GTAC 3 cut(s) 370, 520, 599
DdeI CTNAG 5 cut(s) 53, 63, 99, 239, 515
DpnI GATC 8 cut(s) 321, 335, 473, 507, 645, 674, 680, 735
DpnII GATC 8 cut(s) 319, 333, 471, 505, 643, 672, 678, 733
EciI GGCGGA 1 cut(s) 716
Eco130I CCWWGG 1 cut(s) 226
Eco31I GGTCTC 1 cut(s) 257
Eco57I CTGAAG 1 cut(s) 477
EcoRI GAATTC 1 cut(s) 589
EcoRII CCWGG 1 cut(s) 424
EcoT14I CCWWGG 1 cut(s) 226
ErhI CCWWGG 1 cut(s) 226
FaeI CATG 4 cut(s) 230, 355, 758, 768
FaqI GGGAC 3 cut(s) 60, 218, 502
FatI CATG 4 cut(s) 226, 351, 754, 764
Fnu4HI GCNGC 1 cut(s) 83
FokI GGATG 3 cut(s) 80, 104, 732
Fsp4HI GCNGC 1 cut(s) 83
FspBI CTAG 3 cut(s) 212, 509, 731
GluI GCNGC 1 cut(s) 83
GsuI CTGGAG 1 cut(s) 300
HaeIII GGCC 1 cut(s) 462
HapII CCGG 1 cut(s) 434
Hin1II CATG 4 cut(s) 230, 355, 758, 768
HpaII CCGG 1 cut(s) 434
Hpy166II GTNNAC 3 cut(s) 255, 599, 610
Hpy188I TCNGA 3 cut(s) 324, 533, 683
Hpy188III TCNNGA 7 cut(s) 212, 317, 352, 434, 647, 676, 737
Hpy8I GTNNAC 3 cut(s) 255, 599, 610
HpyAV CCTTC 2 cut(s) 452, 611
HpyCH4III ACNGT 1 cut(s) 698
HpyCH4V TGCA 1 cut(s) 752
HpyF3I CTNAG 5 cut(s) 53, 63, 99, 239, 515
Hsp92II CATG 4 cut(s) 230, 355, 758, 768
Kpn2I TCCGGA 1 cut(s) 433
KpnI GGTACC 1 cut(s) 523
Kzo9I GATC 8 cut(s) 319, 333, 471, 505, 643, 672, 678, 733
LmnI GCTCC 4 cut(s) 71, 79, 396, 707
Lsp1109I GCAGC 1 cut(s) 69
LweI GCATC 1 cut(s) 157
MaeI CTAG 3 cut(s) 212, 509, 731
MaeIII GTNAC 2 cut(s) 234, 654
MalI GATC 8 cut(s) 321, 335, 473, 507, 645, 674, 680, 735
MboI GATC 8 cut(s) 319, 333, 471, 505, 643, 672, 678, 733
MboII GAAGA 3 cut(s) 328, 400, 598
MflI RGATCY 2 cut(s) 505, 733
MhlI GDGCHC 1 cut(s) 276
MluCI AATT 3 cut(s) 110, 325, 589
MnlI CCTC 6 cut(s) 58, 88, 94, 208, 296, 701
MroI TCCGGA 1 cut(s) 433
MseI TTAA 1 cut(s) 12
MspI CCGG 1 cut(s) 434
MspR9I CCNGG 1 cut(s) 426
MvaI CCWGG 1 cut(s) 426
NcoI CCATGG 1 cut(s) 226
NdeII GATC 8 cut(s) 319, 333, 471, 505, 643, 672, 678, 733
NlaIII CATG 4 cut(s) 230, 355, 758, 768
NlaIV GGNNCC 3 cut(s) 521, 624, 703
NmuCI GTSAC 1 cut(s) 654
NspI RCATGY 1 cut(s) 758
PagI TCATGA 1 cut(s) 351
PkrI GCNGC 1 cut(s) 84
Psp6I CCWGG 1 cut(s) 424
PspGI CCWGG 1 cut(s) 424
PspN4I GGNNCC 3 cut(s) 521, 624, 703
PsuI RGATCY 2 cut(s) 505, 733
RsaI GTAC 3 cut(s) 371, 521, 600
RsaNI GTAC 3 cut(s) 370, 520, 599
SaqAI TTAA 1 cut(s) 12
SatI GCNGC 1 cut(s) 83
Sau3AI GATC 8 cut(s) 319, 333, 471, 505, 643, 672, 678, 733
ScaI AGTACT 1 cut(s) 371
ScrFI CCNGG 1 cut(s) 426
SduI GDGCHC 1 cut(s) 276
SfaNI GCATC 1 cut(s) 157
Sse9I AATT 3 cut(s) 110, 325, 589
SsiI CCGC 1 cut(s) 727
SspMI CTAG 3 cut(s) 212, 509, 731
StyD4I CCNGG 1 cut(s) 424
StyI CCWWGG 1 cut(s) 226
TaaI ACNGT 1 cut(s) 698
TasI AATT 3 cut(s) 110, 325, 589
TatI WGTACW 2 cut(s) 369, 598
Tru1I TTAA 1 cut(s) 12
Tru9I TTAA 1 cut(s) 12
TscAI CASTG 1 cut(s) 81
TseFI GTSAC 1 cut(s) 654
TseI GCWGC 1 cut(s) 82
Tsp45I GTSAC 1 cut(s) 654
TspDTI ATGAA 5 cut(s) 162, 187, 340, 368, 400
TspGWI ACGGA 3 cut(s) 104, 240, 694
TspRI CASTG 1 cut(s) 81
XapI RAATTY 2 cut(s) 110, 589
XbaI TCTAGA 1 cut(s) 211
XceI RCATGY 1 cut(s) 758
XspI CTAG 3 cut(s) 212, 509, 731
ZrmI AGTACT 1 cut(s) 371
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.