Rw2G008960

Adipocyte plasma membrane-associated

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_wichuraiana
Chr2
OG0000797
Physical Location & Seq
Reverse (-)
9004035 .. 9006303
2269 bp
Loading structure...
UTR
Exon/CDS
Intron
Rw2G008960.1

Sequence Viewer

Length: 1293 bp
ATGATGCCCAGATTGCCTTGTATACGAAAGCTGCAAAGCACTTTGCTCTCTCCGCTGTTCAAGCACAAACATCCATCTAACTTTCTGTTCCCAGTCGCCTCCATAACTCGCCACCCAATGCCCAAGTCAAGCAACCAAGACTCGCCTTCCTCTGCAACTCAATCTACCAGAAGATCATCATCATCATGGCCCTTAAACATTCTCTTCTTCTCAATACTGCTTCCGGTGGCGGCTGCTGTGGTCCTCTACCAGCTTGACTCATTCGACCCAGCTCCTCTGCCGCTTCGCGAGTTGAGTGAGCAAGTCGCGGCTGCCCGGAGTCGTAATGCTTACATGCTCAAAGGATCGGAGTTTTTGGGTGTTGGGGCTTTAGTGGGGCCAGAAGACGTTGCTTATGATTCAAAGTCGGGACTCATTTACACGGGATGTGCGGACGGGTGGATCAAGCGAGTCAAGTTGAACGAGTCGGCTGCTGACTCGGTGGTGGAGAATTGGGTTAATACCGGCGGGAGACCATTCGGACTCGCACACGGTCATAACGGAGAGCTGTTGGTGGCGGACGGGGAAAGGGGACTACTGAGAATAGACGAGGATAGAGCAGTGGAGCTGCTGACAGATGAGGCTGAGGGTGTAAAATTCAAGCTAACAAACTGTGTAGATGTAGCGAAAGATGGCATGATTTACTTCACAGATGCTTCATATAAAAACAGTGTAGAAGACTTCATCTGGGAGTTTCTAGAGGGCAGACCCCATGGTAGGTTACTGAGCTACAATCCATCGACCAAAGAGACCAAAGTGCTTGTCCGCGATCTCTACTTTGCTAATGGAGTAGCAATCTCTCCGGATCAGAATTATGTGATCTTCTGTGAAACTTTCATGAAAAGATGTAGGAAGTACCACCTGCAAGGTGAGAAGAAAGGGAGCATAGAGAACTTCATTGACAACTTACCGGGCTTCCCGGATAATATCCGATATGATGGGGAAGGCCATTACTGGATTGCAATACCTACGGGGACTTCAGCTATTTTGAATAAAGCACTTGGGTACCGTTTTATCCGAAAAGGGATGGCAATCATGGAGAAGTATATAGTGAGCAGACCATATAAGGAGAAGAATTCTGGTGTAATGGCTGTGAATTTGGAAGGGGAACCTACTGCCCACTATTCTGATCCAGATTTATCACTCATTACAAGTGGGATCAAGATCGGAAACTACCTCTATTGCGGTTCTGTTCTCTATCCATACATCATCCGCCTTGATCTAGAACAACATCCTGCACATACCACTCTATGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
GO:0003674 GO:0003824 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005783 GO:0012505 GO:0016020 GO:0016787 GO:0016788 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044424 GO:0044444 GO:0044464
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
Str_synth

Protein Analysis

430

Amino Acids

47.96

Weight (kDa)

6.84

Isoelectric Point (pI)

41.16

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
SSL_N PF20067 113 - 151 7.9e-08 Strictosidine synthase-like, N-terminal
SGL PF08450 166 - 339 5.8e-15 SMP-30/Gluconolactonase/LRE-like region
Str_synth PF03088 217 - 303 1.3e-31 Strictosidine synthase
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AarI CACCTGC 1 cut(s) 909
Acc36I ACCTGC 1 cut(s) 909
Acc65I GGTACC 1 cut(s) 1044
AccB1I GGYRCC 1 cut(s) 1044
AccI GTMKAC 1 cut(s) 22
AccII CGCG 3 cut(s) 288, 308, 807
AccIII TCCGGA 1 cut(s) 841
AclWI GGATC 5 cut(s) 352, 449, 852, 1163, 1205
AcsI RAATTY 3 cut(s) 635, 1114, 1135
AcuI CTGAAG 1 cut(s) 1002
AfaI GTAC 2 cut(s) 896, 1046
AfiI CCNNNNNNNGG 1 cut(s) 756
AgsI TTSAA 5 cut(s) 61, 402, 460, 640, 1030
AluBI AGCT 8 cut(s) 31, 253, 272, 547, 607, 643, 768, 1022
AluI AGCT 8 cut(s) 31, 253, 272, 547, 607, 643, 768, 1022
Alw26I GTCTC 2 cut(s) 505, 782
AlwI GGATC 5 cut(s) 352, 449, 852, 1163, 1205
Aor13HI TCCGGA 1 cut(s) 841
AoxI GGCC 3 cut(s) 188, 377, 985
ApeKI GCWGC 5 cut(s) 31, 233, 311, 470, 607
ApoI RAATTY 3 cut(s) 635, 1114, 1135
ArsI GACNNNNNNTTYG 2 cut(s) 786, 818
Asp718I GGTACC 1 cut(s) 1044
AspS9I GGNCC 3 cut(s) 189, 241, 377
AsuC2I CCSGG 3 cut(s) 316, 951, 959
AsuHPI GGTGA 1 cut(s) 920
AvaII GGWCC 1 cut(s) 241
BaeI ACNNNNGTAYC 2 cut(s) 1028, 1061
BanI GGYRCC 1 cut(s) 1044
BbsI GAAGAC 2 cut(s) 390, 723
BbvCI CCTCAGC 1 cut(s) 624
BbvI GCAGC 5 cut(s) 18, 220, 298, 457, 594
BccI CCATC 5 cut(s) 82, 665, 784, 971, 1060
BcgI CGANNNNNNTGC 2 cut(s) 452, 486
BcnI CCSGG 3 cut(s) 316, 951, 959
BcoDI GTCTC 2 cut(s) 505, 782
BfaI CTAG 2 cut(s) 737, 1262
BfuAI ACCTGC 1 cut(s) 909
BisI GCNGC 8 cut(s) 32, 231, 234, 281, 309, 312, 471, 608
BlsI GCNGC 8 cut(s) 33, 232, 235, 282, 310, 313, 472, 609
Bme1390I CCNGG 3 cut(s) 316, 951, 959
Bme18I GGWCC 1 cut(s) 241
BmgT120I GGNCC 3 cut(s) 189, 241, 377
BmiI GGNNCC 3 cut(s) 378, 1046, 1149
BmrFI CCNGG 3 cut(s) 316, 951, 959
BmrI ACTGGG 1 cut(s) 86
BmsI GCATC 1 cut(s) 682
BmuI ACTGGG 1 cut(s) 86
BpiI GAAGAC 2 cut(s) 390, 723
Bpu10I CCTNAGC 1 cut(s) 624
BpuMI CCSGG 3 cut(s) 316, 951, 959
BsaBI GATNNNNATC 3 cut(s) 178, 1070, 1202
BsaI GGTCTC 2 cut(s) 505, 782
BsaJI CCNNGG 1 cut(s) 751
BsaWI WCCGGW 2 cut(s) 223, 841
Bsc4I CCNNNNNNNGG 1 cut(s) 756
Bse118I RCCGGY 1 cut(s) 503
Bse1I ACTGG 2 cut(s) 92, 998
Bse8I GATNNNNATC 3 cut(s) 178, 1070, 1202
BseAI TCCGGA 1 cut(s) 841
BseDI CCNNGG 1 cut(s) 751
BseGI GGATG 5 cut(s) 70, 431, 1071, 1248, 1270
BseJI GATNNNNATC 3 cut(s) 178, 1070, 1202
BseLI CCNNNNNNNGG 1 cut(s) 756
BseMII CTCAG 3 cut(s) 569, 615, 755
BseNI ACTGG 2 cut(s) 92, 998
BseRI GAGGAG 1 cut(s) 264
BseXI GCAGC 5 cut(s) 18, 220, 298, 457, 594
BseYI CCCAGC 1 cut(s) 268
BsgI GTGCAG 1 cut(s) 1260
Bsh1236I CGCG 3 cut(s) 288, 308, 807
BshFI GGCC 3 cut(s) 190, 379, 987
BshNI GGYRCC 1 cut(s) 1044
BsiSI CCGG 6 cut(s) 224, 316, 504, 842, 950, 959
BslFI GGGAC 3 cut(s) 423, 585, 1027
BslI CCNNNNNNNGG 1 cut(s) 756
BsmAI GTCTC 2 cut(s) 505, 782
BsmFI GGGAC 3 cut(s) 423, 585, 1027
BsnI GGCC 3 cut(s) 190, 379, 987
Bso31I GGTCTC 2 cut(s) 505, 782
Bsp13I TCCGGA 1 cut(s) 841
Bsp19I CCATGG 1 cut(s) 751
Bsp68I TCGCGA 1 cut(s) 288
BspANI GGCC 3 cut(s) 190, 379, 987
BspCNI CTCAG 3 cut(s) 570, 616, 756
BspEI TCCGGA 1 cut(s) 841
BspFNI CGCG 3 cut(s) 288, 308, 807
BspHI TCATGA 1 cut(s) 876
BspLI GGNNCC 3 cut(s) 378, 1046, 1149
BspMI ACCTGC 1 cut(s) 909
BspPI GGATC 5 cut(s) 352, 449, 852, 1163, 1205
BspT107I GGYRCC 1 cut(s) 1044
BspTNI GGTCTC 2 cut(s) 505, 782
BsrFI RCCGGY 1 cut(s) 503
BsrI ACTGG 2 cut(s) 92, 998
BssAI RCCGGY 1 cut(s) 503
BssECI CCNNGG 1 cut(s) 751
BssNAI GTATAC 1 cut(s) 23
BssT1I CCWWGG 1 cut(s) 751
Bst1107I GTATAC 1 cut(s) 23
Bst4CI ACNGT 4 cut(s) 533, 653, 710, 1049
Bst6I CTCTTC 1 cut(s) 209
BstDEI CTNAG 3 cut(s) 578, 624, 764
BstDSI CCRYGG 1 cut(s) 751
BstF5I GGATG 5 cut(s) 70, 431, 1071, 1248, 1270
BstFNI CGCG 3 cut(s) 288, 308, 807
BstMAI GTCTC 2 cut(s) 505, 782
BstMWI GCNNNNNNNGC 3 cut(s) 13, 52, 61
BstNSI RCATGY 1 cut(s) 337
BstSCI CCNGG 3 cut(s) 314, 949, 957
BstUI CGCG 3 cut(s) 288, 308, 807
BstV1I GCAGC 5 cut(s) 18, 220, 298, 457, 594
BstV2I GAAGAC 2 cut(s) 390, 723
BstZ17I GTATAC 1 cut(s) 23
BsuRI GGCC 3 cut(s) 190, 379, 987
BtgI CCRYGG 1 cut(s) 751
BtsCI GGATG 5 cut(s) 70, 431, 1071, 1248, 1270
BtsI GCAGTG 1 cut(s) 606
BtsIMutI CAGTG 2 cut(s) 606, 715
BtuMI TCGCGA 1 cut(s) 288
BveI ACCTGC 1 cut(s) 909
CciI TCATGA 1 cut(s) 876
Cfr10I RCCGGY 1 cut(s) 503
Cfr13I GGNCC 3 cut(s) 189, 241, 377
Csp6I GTAC 2 cut(s) 895, 1045
CviAII CATG 6 cut(s) 186, 334, 676, 752, 877, 1075
CviQI GTAC 2 cut(s) 895, 1045
DdeI CTNAG 3 cut(s) 578, 624, 764
Eam1104I CTCTTC 1 cut(s) 209
EarI CTCTTC 1 cut(s) 209
EciI GGCGGA 2 cut(s) 572, 1241
Eco130I CCWWGG 1 cut(s) 751
Eco31I GGTCTC 2 cut(s) 505, 782
Eco47I GGWCC 1 cut(s) 241
Eco57I CTGAAG 1 cut(s) 1002
EcoRI GAATTC 1 cut(s) 1114
EcoT14I CCWWGG 1 cut(s) 751
ErhI CCWWGG 1 cut(s) 751
FaeI CATG 6 cut(s) 189, 337, 679, 755, 880, 1078
FaqI GGGAC 3 cut(s) 423, 585, 1027
FatI CATG 6 cut(s) 185, 333, 675, 751, 876, 1074
FauI CCCGC 1 cut(s) 500
FblI GTMKAC 1 cut(s) 22
Fnu4HI GCNGC 8 cut(s) 32, 231, 234, 281, 309, 312, 471, 608
FokI GGATG 5 cut(s) 57, 438, 1078, 1235, 1257
Fsp4HI GCNGC 8 cut(s) 32, 231, 234, 281, 309, 312, 471, 608
FspBI CTAG 2 cut(s) 737, 1262
GluI GCNGC 8 cut(s) 32, 231, 234, 281, 309, 312, 471, 608
GsaI CCCAGC 1 cut(s) 272
HaeIII GGCC 3 cut(s) 190, 379, 987
HapII CCGG 6 cut(s) 224, 316, 504, 842, 950, 959
Hin1II CATG 6 cut(s) 189, 337, 679, 755, 880, 1078
HinfI GANTC 9 cut(s) 140, 257, 319, 398, 411, 450, 464, 476, 522
HpaII CCGG 6 cut(s) 224, 316, 504, 842, 950, 959
HphI GGTGA 1 cut(s) 920
Hpy166II GTNNAC 1 cut(s) 23
Hpy188I TCNGA 7 cut(s) 349, 521, 849, 971, 1058, 1168, 1208
Hpy188III TCNNGA 8 cut(s) 287, 408, 737, 842, 877, 1172, 1201, 1262
Hpy8I GTNNAC 1 cut(s) 23
HpyAV CCTTC 3 cut(s) 156, 977, 1136
HpyCH4III ACNGT 4 cut(s) 533, 653, 710, 1049
HpyCH4IV ACGT 1 cut(s) 387
HpyCH4V TGCA 5 cut(s) 34, 155, 904, 1001, 1277
HpyF10VI GCNNNNNNNGC 3 cut(s) 13, 52, 61
HpyF3I CTNAG 3 cut(s) 578, 624, 764
HpySE526I ACGT 1 cut(s) 387
Hsp92II CATG 6 cut(s) 189, 337, 679, 755, 880, 1078
Kpn2I TCCGGA 1 cut(s) 841
KpnI GGTACC 1 cut(s) 1048
LmnI GCTCC 3 cut(s) 277, 604, 921
Lsp1109I GCAGC 5 cut(s) 18, 220, 298, 457, 594
LweI GCATC 1 cut(s) 682
MaeI CTAG 2 cut(s) 737, 1262
MaeII ACGT 1 cut(s) 387
MaeIII GTNAC 1 cut(s) 759
MboII GAAGA 8 cut(s) 183, 196, 199, 395, 728, 853, 925, 1123
MluCI AATT 5 cut(s) 490, 635, 850, 1114, 1135
MlyI GAGTC 8 cut(s) 134, 251, 328, 405, 459, 470, 473, 516
MnlI CCTC 9 cut(s) 109, 160, 254, 285, 583, 613, 619, 733, 1226
MroI TCCGGA 1 cut(s) 841
MseI TTAA 2 cut(s) 194, 498
MslI CAYNNNNRTG 1 cut(s) 184
MspA1I CMGCKG 1 cut(s) 55
MspI CCGG 6 cut(s) 224, 316, 504, 842, 950, 959
MspR9I CCNGG 3 cut(s) 316, 951, 959
MvnI CGCG 3 cut(s) 288, 308, 807
MwoI GCNNNNNNNGC 3 cut(s) 13, 52, 61
NciI CCSGG 3 cut(s) 316, 951, 959
NcoI CCATGG 1 cut(s) 751
NlaIII CATG 6 cut(s) 189, 337, 679, 755, 880, 1078
NlaIV GGNNCC 3 cut(s) 378, 1046, 1149
NruI TCGCGA 1 cut(s) 288
NspI RCATGY 1 cut(s) 337
PagI TCATGA 1 cut(s) 876
PaqCI CACCTGC 1 cut(s) 909
PfeI GAWTC 1 cut(s) 398
PfoI TCCNGGA 1 cut(s) 957
PkrI GCNGC 8 cut(s) 33, 232, 235, 282, 310, 313, 472, 609
PleI GAGTC 8 cut(s) 134, 251, 327, 405, 458, 470, 472, 516
PpsI GAGTC 8 cut(s) 134, 251, 327, 405, 458, 470, 472, 516
PspFI CCCAGC 1 cut(s) 268
PspN4I GGNNCC 3 cut(s) 378, 1046, 1149
PspPI GGNCC 3 cut(s) 189, 241, 377
RruI TCGCGA 1 cut(s) 288
RsaI GTAC 2 cut(s) 896, 1046
RsaNI GTAC 2 cut(s) 895, 1045
RseI CAYNNNNRTG 1 cut(s) 184
SaqAI TTAA 2 cut(s) 194, 498
SatI GCNGC 8 cut(s) 32, 231, 234, 281, 309, 312, 471, 608
Sau96I GGNCC 3 cut(s) 189, 241, 377
SchI GAGTC 8 cut(s) 134, 251, 328, 405, 459, 470, 473, 516
ScrFI CCNGG 3 cut(s) 316, 951, 959
SfaNI GCATC 1 cut(s) 682
SinI GGWCC 1 cut(s) 241
SmiMI CAYNNNNRTG 1 cut(s) 184
Sse9I AATT 5 cut(s) 490, 635, 850, 1114, 1135
SspMI CTAG 2 cut(s) 737, 1262
StyD4I CCNGG 3 cut(s) 314, 949, 957
StyI CCWWGG 1 cut(s) 751
TaaI ACNGT 4 cut(s) 533, 653, 710, 1049
TaiI ACGT 1 cut(s) 390
TaqI TCGA 2 cut(s) 264, 779
TasI AATT 5 cut(s) 490, 635, 850, 1114, 1135
TauI GCSGC 3 cut(s) 233, 283, 311
TfiI GAWTC 1 cut(s) 398
Tru1I TTAA 2 cut(s) 194, 498
Tru9I TTAA 2 cut(s) 194, 498
TscAI CASTG 2 cut(s) 606, 715
TseI GCWGC 5 cut(s) 31, 233, 311, 470, 607
TspDTI ATGAA 5 cut(s) 687, 712, 865, 893, 925
TspGWI ACGGA 1 cut(s) 555
TspRI CASTG 2 cut(s) 606, 715
VpaK11BI GGWCC 1 cut(s) 241
XapI RAATTY 3 cut(s) 635, 1114, 1135
XbaI TCTAGA 2 cut(s) 736, 1261
XceI RCATGY 1 cut(s) 337
XmiI GTMKAC 1 cut(s) 22
XspI CTAG 2 cut(s) 737, 1262
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.