FvH4_1g10571

Adipocyte plasma membrane-associated

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
fragaria_vesca
Fvb1
OG0000797
Physical Location & Seq
Reverse (-)
5796097 .. 5797919
1823 bp
Loading structure...
UTR
Exon/CDS
Intron
FvH4_1g10571.t1

Sequence Viewer

Length: 921 bp
ATGCCCGAGCCAAGCAACCGAGACTCACCTTCCTCTGCAACTCAAGCCTGTAGAAGATCACCATCTTCATCATGGCCCTTGAACATTCTCCTCTTTTCAATACTGGTTCCGGTGGCCGCGGCTGTGCTCCTCTACCAGCTCGACCCTTTCGACCCGGTTCCTTTCCCTCACGAGTTGATGAGTGAGCGAGTCGCGGCTCCCCTGAGGCGTAATGCTCAGATGCTCAAAGAGTCGGAGTTTATAGGTGTTGGGGCTTTAGATGCGCCGAAAGACGTTGCTTATGACTCAAAGTCGGGACTCATTTACACGGGCTGTGCAGACGGGTGGATCAAGCGAGTCACGTTGAACGAGTCGGTTGCTGACTCGGTGGTGGAGAACTGGGTTAACACCGGCGGGAGACCACTCGGACTCGCTCACGGTCATGATGGTGAGCTTTTGGTGGCGGACGCGAAAAAGGGCCTACTGAGCATTGATGAGGATGGAGCAGTGGAGCTGCTGACAGATGAGACCGAGAGTGTAAAATTGAAAGCAACAAACAATGTAGATGTAGCCACCGATGGCATGATTTACTTCACAGATGCTTCATATAAATACAAAAAGGAAGAATTCATATGGGACTTTCTAGAGGGCAGACCCATGGGTATTACAACTGCTTCGAATCTAGCAATCAGATACCCTTTTATTCGAAAAGGGATGGCAATCTTGGAGAAATACGTAGCGAGTTCATCACAAATGGAGAAGAATACTGGTGTGGTAGCTATGAATTTGGAAGGGGAACTTACTGCTCACTATACTGATCCAGATCTTTCAGGCATCACTAGTGGGATCAAGATTGGAAACTATTTATACTGCGGTTCATTTCGCAGTTCGTACATTATGCGCCTTGATCTGGAACAACATCCTGCAGTTACCACTACATGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
GO:0003674 GO:0003824 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005783 GO:0012505 GO:0016020 GO:0016787 GO:0016788 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044424 GO:0044444 GO:0044464
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
Str_synth

Protein Analysis

307

Amino Acids

33.46

Weight (kDa)

4.92

Isoelectric Point (pI)

44.93

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
Str_synth PF03088 179 - 214 1.6e-06 Strictosidine synthase
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccII CGCG 3 cut(s) 119, 194, 449
AciI CCGC 6 cut(s) 117, 119, 194, 393, 443, 852
AclWI GGATC 3 cut(s) 335, 791, 833
AcoI YGGCCR 1 cut(s) 114
AcsI RAATTY 2 cut(s) 605, 763
AfaI GTAC 1 cut(s) 872
AfiI CCNNNNNNNGG 1 cut(s) 889
AgsI TTSAA 4 cut(s) 82, 99, 346, 526
AhdI GACNNNNNGTC 1 cut(s) 289
AhlI ACTAGT 1 cut(s) 818
AluBI AGCT 4 cut(s) 139, 433, 493, 758
AluI AGCT 4 cut(s) 139, 433, 493, 758
Alw21I GWGCWC 1 cut(s) 129
Alw26I GTCTC 3 cut(s) 15, 391, 500
AlwI GGATC 3 cut(s) 335, 791, 833
Ama87I CYCGRG 1 cut(s) 5
AoxI GGCC 3 cut(s) 74, 114, 457
ApeKI GCWGC 1 cut(s) 493
ApoI RAATTY 2 cut(s) 605, 763
AspLEI GCGC 2 cut(s) 265, 882
AspS9I GGNCC 2 cut(s) 75, 457
AsuC2I CCSGG 1 cut(s) 155
AsuHPI GGTGA 3 cut(s) 18, 51, 440
AsuII TTCGAA 2 cut(s) 656, 685
AvaI CYCGRG 1 cut(s) 5
AxyI CCTNAGG 1 cut(s) 203
BauI CACGAG 1 cut(s) 170
Bbv12I GWGCWC 1 cut(s) 129
BbvI GCAGC 1 cut(s) 480
BccI CCATC 5 cut(s) 70, 419, 473, 551, 688
BcgI CGANNNNNNTGC 2 cut(s) 338, 372
BcnI CCSGG 1 cut(s) 155
BcoDI GTCTC 3 cut(s) 15, 391, 500
BcuI ACTAGT 1 cut(s) 818
BfaI CTAG 3 cut(s) 623, 662, 819
BfmI CTRYAG 2 cut(s) 49, 903
BglII AGATCT 1 cut(s) 802
BisI GCNGC 4 cut(s) 117, 120, 195, 494
BlsI GCNGC 4 cut(s) 118, 121, 196, 495
Bme1390I CCNGG 1 cut(s) 155
BmeRI GACNNNNNGTC 1 cut(s) 289
BmeT110I CYCGRG 1 cut(s) 5
BmgT120I GGNCC 2 cut(s) 75, 457
BmiI GGNNCC 3 cut(s) 108, 159, 198
BmrFI CCNGG 1 cut(s) 155
BmrI ACTGGG 1 cut(s) 388
BmsI GCATC 4 cut(s) 210, 250, 568, 822
BmuI ACTGGG 1 cut(s) 388
Bpu14I TTCGAA 2 cut(s) 656, 685
BpuEI CTTGAG 1 cut(s) 27
BpuMI CCSGG 1 cut(s) 155
BsaAI YACGTR 1 cut(s) 715
BsaBI GATNNNNATC 3 cut(s) 61, 698, 801
BsaI GGTCTC 2 cut(s) 391, 500
BsaJI CCNNGG 2 cut(s) 117, 636
BsaWI WCCGGW 1 cut(s) 109
Bsc4I CCNNNNNNNGG 1 cut(s) 889
Bse118I RCCGGY 1 cut(s) 389
Bse1I ACTGG 3 cut(s) 108, 383, 751
Bse21I CCTNAGG 1 cut(s) 203
Bse8I GATNNNNATC 3 cut(s) 61, 698, 801
BseDI CCNNGG 2 cut(s) 117, 636
BseGI GGATG 3 cut(s) 484, 699, 898
BseJI GATNNNNATC 3 cut(s) 61, 698, 801
BseLI CCNNNNNNNGG 1 cut(s) 889
BseMII CTCAG 3 cut(s) 194, 230, 455
BseNI ACTGG 3 cut(s) 108, 383, 751
BseRI GAGGAG 2 cut(s) 80, 119
BseXI GCAGC 1 cut(s) 480
BsgI GTGCAG 1 cut(s) 336
Bsh1236I CGCG 3 cut(s) 119, 194, 449
BshFI GGCC 3 cut(s) 76, 116, 459
BsiHKAI GWGCWC 1 cut(s) 129
BsiHKCI CYCGRG 1 cut(s) 5
BsiSI CCGG 3 cut(s) 110, 155, 390
BslFI GGGAC 2 cut(s) 309, 629
BslI CCNNNNNNNGG 1 cut(s) 889
BsmAI GTCTC 3 cut(s) 15, 391, 500
BsmFI GGGAC 2 cut(s) 309, 629
BsnI GGCC 3 cut(s) 76, 116, 459
Bso31I GGTCTC 2 cut(s) 391, 500
BsoBI CYCGRG 1 cut(s) 5
Bsp119I TTCGAA 2 cut(s) 656, 685
Bsp1286I GDGCHC 1 cut(s) 129
Bsp143I GATC 6 cut(s) 56, 327, 796, 802, 825, 886
Bsp19I CCATGG 1 cut(s) 636
BspACI CCGC 6 cut(s) 117, 119, 194, 393, 443, 852
BspANI GGCC 3 cut(s) 76, 116, 459
BspCNI CTCAG 3 cut(s) 195, 229, 456
BspFNI CGCG 3 cut(s) 119, 194, 449
BspHI TCATGA 1 cut(s) 421
BspLI GGNNCC 3 cut(s) 108, 159, 198
BspMAI CTGCAG 1 cut(s) 907
BspPI GGATC 3 cut(s) 335, 791, 833
BspT104I TTCGAA 2 cut(s) 656, 685
BspTNI GGTCTC 2 cut(s) 391, 500
BsrFI RCCGGY 1 cut(s) 389
BsrI ACTGG 3 cut(s) 108, 383, 751
BssAI RCCGGY 1 cut(s) 389
BssECI CCNNGG 2 cut(s) 117, 636
BssMI GATC 6 cut(s) 56, 327, 796, 802, 825, 886
BssSI CACGAG 1 cut(s) 170
BssT1I CCWWGG 1 cut(s) 636
Bst2BI CACGAG 1 cut(s) 170
Bst4CI ACNGT 1 cut(s) 419
BstBAI YACGTR 1 cut(s) 715
BstBI TTCGAA 2 cut(s) 656, 685
BstDEI CTNAG 3 cut(s) 203, 216, 464
BstDSI CCRYGG 2 cut(s) 117, 636
BstF5I GGATG 3 cut(s) 484, 699, 898
BstFNI CGCG 3 cut(s) 119, 194, 449
BstHHI GCGC 2 cut(s) 265, 882
BstKTI GATC 6 cut(s) 59, 330, 799, 805, 828, 889
BstMAI GTCTC 3 cut(s) 15, 391, 500
BstMBI GATC 6 cut(s) 56, 327, 796, 802, 825, 886
BstMWI GCNNNNNNNGC 3 cut(s) 44, 260, 465
BstSCI CCNGG 1 cut(s) 153
BstSFI CTRYAG 2 cut(s) 49, 903
BstSNI TACGTA 1 cut(s) 715
BstUI CGCG 3 cut(s) 119, 194, 449
BstV1I GCAGC 1 cut(s) 480
BstX2I RGATCY 1 cut(s) 802
BstYI RGATCY 1 cut(s) 802
Bsu36I CCTNAGG 1 cut(s) 203
BsuRI GGCC 3 cut(s) 76, 116, 459
BtgI CCRYGG 2 cut(s) 117, 636
BtsCI GGATG 3 cut(s) 484, 699, 898
BtsI GCAGTG 1 cut(s) 492
BtsIMutI CAGTG 1 cut(s) 492
CciI TCATGA 1 cut(s) 421
CfoI GCGC 2 cut(s) 265, 882
Cfr10I RCCGGY 1 cut(s) 389
Cfr13I GGNCC 2 cut(s) 75, 457
Cfr42I CCGCGG 1 cut(s) 120
CseI GACGC 1 cut(s) 455
Csp6I GTAC 1 cut(s) 871
CviAII CATG 5 cut(s) 72, 422, 562, 637, 918
CviQI GTAC 1 cut(s) 871
DdeI CTNAG 3 cut(s) 203, 216, 464
DpnI GATC 6 cut(s) 58, 329, 798, 804, 827, 888
DpnII GATC 6 cut(s) 56, 327, 796, 802, 825, 886
DriI GACNNNNNGTC 1 cut(s) 289
EaeI YGGCCR 1 cut(s) 114
Eam1105I GACNNNNNGTC 1 cut(s) 289
EciI GGCGGA 1 cut(s) 458
Eco105I TACGTA 1 cut(s) 715
Eco130I CCWWGG 1 cut(s) 636
Eco31I GGTCTC 2 cut(s) 391, 500
Eco81I CCTNAGG 1 cut(s) 203
Eco88I CYCGRG 1 cut(s) 5
EcoO109I RGGNCCY 1 cut(s) 457
EcoRI GAATTC 1 cut(s) 605
EcoT14I CCWWGG 1 cut(s) 636
ErhI CCWWGG 1 cut(s) 636
FaeI CATG 5 cut(s) 75, 425, 565, 640, 921
FalI AAGNNNNNCTT 2 cut(s) 762, 794
FaqI GGGAC 2 cut(s) 309, 629
FatI CATG 5 cut(s) 71, 421, 561, 636, 917
FauI CCCGC 1 cut(s) 386
FauNDI CATATG 1 cut(s) 611
Fnu4HI GCNGC 4 cut(s) 117, 120, 195, 494
FokI GGATG 3 cut(s) 491, 706, 885
Fsp4HI GCNGC 4 cut(s) 117, 120, 195, 494
FspBI CTAG 3 cut(s) 623, 662, 819
GlaI GCGC 2 cut(s) 264, 881
GluI GCNGC 4 cut(s) 117, 120, 195, 494
HaeIII GGCC 3 cut(s) 76, 116, 459
HapII CCGG 3 cut(s) 110, 155, 390
HgaI GACGC 1 cut(s) 455
HhaI GCGC 2 cut(s) 265, 882
Hin1II CATG 5 cut(s) 75, 425, 565, 640, 921
Hin6I GCGC 2 cut(s) 263, 880
HinP1I GCGC 2 cut(s) 263, 880
HincII GTYRAC 1 cut(s) 385
HindII GTYRAC 1 cut(s) 385
HpaI GTTAAC 1 cut(s) 385
HpaII CCGG 3 cut(s) 110, 155, 390
HphI GGTGA 3 cut(s) 18, 51, 440
Hpy166II GTNNAC 1 cut(s) 385
Hpy188I TCNGA 4 cut(s) 219, 235, 407, 671
Hpy188III TCNNGA 7 cut(s) 170, 294, 422, 623, 800, 829, 890
Hpy8I GTNNAC 1 cut(s) 385
HpyAV CCTTC 2 cut(s) 39, 764
HpyCH4III ACNGT 1 cut(s) 419
HpyCH4IV ACGT 3 cut(s) 273, 341, 714
HpyCH4V TGCA 3 cut(s) 38, 317, 905
HpyF10VI GCNNNNNNNGC 3 cut(s) 44, 260, 465
HpyF3I CTNAG 3 cut(s) 203, 216, 464
HpySE526I ACGT 3 cut(s) 273, 341, 714
Hsp92II CATG 5 cut(s) 75, 425, 565, 640, 921
HspAI GCGC 2 cut(s) 263, 880
KspAI GTTAAC 1 cut(s) 385
KspI CCGCGG 1 cut(s) 120
Kzo9I GATC 6 cut(s) 56, 327, 796, 802, 825, 886
LmnI GCTCC 4 cut(s) 132, 202, 482, 490
Lsp1109I GCAGC 1 cut(s) 480
LweI GCATC 4 cut(s) 210, 250, 568, 822
MaeI CTAG 3 cut(s) 623, 662, 819
MaeII ACGT 3 cut(s) 273, 341, 714
MaeIII GTNAC 2 cut(s) 337, 907
MalI GATC 6 cut(s) 58, 329, 798, 804, 827, 888
MboI GATC 6 cut(s) 56, 327, 796, 802, 825, 886
MboII GAAGA 4 cut(s) 57, 66, 614, 751
MflI RGATCY 1 cut(s) 802
MhlI GDGCHC 1 cut(s) 129
MluCI AATT 3 cut(s) 521, 605, 763
MlyI GAGTC 9 cut(s) 17, 198, 239, 278, 291, 345, 356, 359, 402
MmeI TCCRAC 1 cut(s) 213
MnlI CCTC 7 cut(s) 43, 101, 140, 177, 198, 469, 619
MseI TTAA 1 cut(s) 384
MslI CAYNNNNRTG 2 cut(s) 420, 426
MspA1I CMGCKG 1 cut(s) 119
MspI CCGG 3 cut(s) 110, 155, 390
MspR9I CCNGG 1 cut(s) 155
MvnI CGCG 3 cut(s) 119, 194, 449
MwoI GCNNNNNNNGC 3 cut(s) 44, 260, 465
NciI CCSGG 1 cut(s) 155
NcoI CCATGG 1 cut(s) 636
NdeI CATATG 1 cut(s) 611
NdeII GATC 6 cut(s) 56, 327, 796, 802, 825, 886
NlaIII CATG 5 cut(s) 75, 425, 565, 640, 921
NlaIV GGNNCC 3 cut(s) 108, 159, 198
NmuCI GTSAC 1 cut(s) 337
NspV TTCGAA 2 cut(s) 656, 685
PagI TCATGA 1 cut(s) 421
PcsI WCGNNNNNNNCGW 1 cut(s) 147
PfeI GAWTC 1 cut(s) 658
PkrI GCNGC 4 cut(s) 118, 121, 196, 495
PleI GAGTC 9 cut(s) 17, 197, 238, 278, 291, 344, 356, 358, 402
PpsI GAGTC 9 cut(s) 17, 197, 238, 278, 291, 344, 356, 358, 402
Ppu21I YACGTR 1 cut(s) 715
PspN4I GGNNCC 3 cut(s) 108, 159, 198
PspPI GGNCC 2 cut(s) 75, 457
PstI CTGCAG 1 cut(s) 907
PsuI RGATCY 1 cut(s) 802
RsaI GTAC 1 cut(s) 872
RsaNI GTAC 1 cut(s) 871
RseI CAYNNNNRTG 2 cut(s) 420, 426
SacII CCGCGG 1 cut(s) 120
SaqAI TTAA 1 cut(s) 384
SatI GCNGC 4 cut(s) 117, 120, 195, 494
Sau3AI GATC 6 cut(s) 56, 327, 796, 802, 825, 886
Sau96I GGNCC 2 cut(s) 75, 457
SchI GAGTC 9 cut(s) 17, 198, 239, 278, 291, 345, 356, 359, 402
ScrFI CCNGG 1 cut(s) 155
SduI GDGCHC 1 cut(s) 129
SetI ASST 9 cut(s) 31, 141, 247, 276, 344, 435, 495, 717, 760
SfaNI GCATC 4 cut(s) 210, 250, 568, 822
SfcI CTRYAG 2 cut(s) 49, 903
Sfr303I CCGCGG 1 cut(s) 120
SfuI TTCGAA 2 cut(s) 656, 685
SgrAI CRCCGGYG 1 cut(s) 389
SgrBI CCGCGG 1 cut(s) 120
SmiMI CAYNNNNRTG 2 cut(s) 420, 426
SmlI CTYRAG 1 cut(s) 42
SmoI CTYRAG 1 cut(s) 42
SnaBI TACGTA 1 cut(s) 715
SpeI ACTAGT 1 cut(s) 818
Sse9I AATT 3 cut(s) 521, 605, 763
SsiI CCGC 6 cut(s) 117, 119, 194, 393, 443, 852
SspMI CTAG 3 cut(s) 623, 662, 819
StyD4I CCNGG 1 cut(s) 153
StyI CCWWGG 1 cut(s) 636
TaaI ACNGT 1 cut(s) 419
TaiI ACGT 3 cut(s) 276, 344, 717
TaqI TCGA 4 cut(s) 141, 150, 656, 685
TaqII GACCGA 1 cut(s) 524
TasI AATT 3 cut(s) 521, 605, 763
TauI GCSGC 3 cut(s) 119, 122, 197
TfiI GAWTC 1 cut(s) 658
Tru1I TTAA 1 cut(s) 384
Tru9I TTAA 1 cut(s) 384
TscAI CASTG 1 cut(s) 492
TseFI GTSAC 1 cut(s) 337
TseI GCWGC 1 cut(s) 493
Tsp45I GTSAC 1 cut(s) 337
TspDTI ATGAA 6 cut(s) 57, 573, 598, 714, 776, 846
TspRI CASTG 1 cut(s) 492
XapI RAATTY 2 cut(s) 605, 763
XbaI TCTAGA 1 cut(s) 622
XcmI CCANNNNNNNNNTGG 1 cut(s) 69
XspI CTAG 3 cut(s) 623, 662, 819
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.