Rw2G053190

Adipocyte plasma membrane-associated

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_wichuraiana
Chr2
OG0000797
Physical Location & Seq
Forward (+)
81011422 .. 81013281
1860 bp
Loading structure...
UTR
Exon/CDS
Intron
Rw2G053190.1

Sequence Viewer

Length: 1185 bp
ATGCCCGAGTCAAACAACCATAACTCAGCTTCCCCTTCAACTCACGCTAGTAGAAGATCATCGTCATCTTCATCATGGCCTTTGAACTTTCTCTTCTTGTCAATACTGGTTCCTGTGGCGGCAGCTCTGCTAATCCTCTACCAGCTCGACTCGTTCGATCCGGCTCCTCTGCCGCTTCACGAGTTAAGCCACCGAGTCACAGCTGCCCCAGCGCGTAATGCTCACATGCTTAAAGGGTCGGAATTTATAGGTGTTGGGGCTTTAATGGCGCCGGAAGACATTGCTTATGATTCAAAGTCGGGACTCATTTACACGGGCTGTGCGGACGGGTGGGTCAAGCGAGTCACGTTGAACGAGTCGGCTGCTGACTCGGTGGTTGAGAACTGGGTTAACACCGGCGGGAGACCACTCGGACTCGCTCACGGTCAAGACGGTCAGATCTTGGTCGCGGATACAGAGAAGGGACTACTGAGTATAACTGAGGATGGAGAAGTGGAGCTGTTGACTGATGAGGCTGACGGTGTGAAATTCAAGCTTACAGATGCTGTGGATGTAGCAAAAGATGGCATGATTTACTTCACAGATGCTTCGTATGTGTACAGCTTAAAAGACTGCATCTTGGACATTCTGGAGGGCAAACCCCATGGTAGATTACTCAGCTACGATCCAACTATGAAAGAGACCAAAGTGCTAGTCCCCGACCTCTACTTTGCTAATGGAGTTGCAGTCTCTCCGGATCAGAATTTTGTGATCTTCTGTGAAAGTGTCATGAGAAGATGTAAAAAGTACTACCTGCAAGGCGAGAAGAAAGGAAACGTAGAGAACTTCATTGACAACTTGCCGGGCACCCCTGATAATATTCGATATGATGGAGAAGGCCATTACTGGATTGCATTTGCTACGGAGATTACAGATTCTTGGAATCTAGCACTTAGGTACCCTTTTATTCGAAAATGGCTGGCAATCATGGAGAAGTATACAGCAGGAAGACTACATATGGAGAAAAATTCTGGTGTAATGGCTGTTAATTTGGAAGGGGAACCTATTGCCCACTATTTTGATCCAGGGTTATCAGCCGTTTCAAGTGGGATCAAGATCGGAAATTACCTATACTGCGGTTCACTTTTCTATCCATACATTATCCGCTTCGATCTGGAACGAAATCCTGCACATGCCGCTACATGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
GO:0003674 GO:0003824 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005783 GO:0012505 GO:0016020 GO:0016787 GO:0016788 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044424 GO:0044444 GO:0044464
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
Str_synth

Protein Analysis

394

Amino Acids

43.46

Weight (kDa)

5.17

Isoelectric Point (pI)

38.51

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
SSL_N PF20067 77 - 115 2.9e-06 Strictosidine synthase-like, N-terminal
SGL PF08450 130 - 299 1.2e-14 SMP-30/Gluconolactonase/LRE-like region
Str_synth PF03088 181 - 267 6.2e-34 Strictosidine synthase
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AasI GACNNNNNNGTC 1 cut(s) 332
Acc36I ACCTGC 1 cut(s) 801
Acc65I GGTACC 1 cut(s) 936
AccB1I GGYRCC 3 cut(s) 268, 845, 936
AccI GTMKAC 1 cut(s) 977
AccII CGCG 2 cut(s) 214, 449
AccIII TCCGGA 1 cut(s) 733
AciI CCGC 8 cut(s) 119, 173, 323, 399, 449, 1116, 1144, 1176
AclWI GGATC 5 cut(s) 152, 659, 744, 1055, 1097
AcsI RAATTY 4 cut(s) 242, 527, 742, 1006
AcyI GRCGYC 1 cut(s) 269
AfaI GTAC 3 cut(s) 599, 788, 938
AgsI TTSAA 6 cut(s) 39, 85, 294, 352, 532, 1083
AjnI CCWGG 1 cut(s) 1063
AluBI AGCT 8 cut(s) 29, 125, 145, 203, 499, 535, 603, 660
AluI AGCT 8 cut(s) 29, 125, 145, 203, 499, 535, 603, 660
Alw26I GTCTC 3 cut(s) 397, 674, 733
AlwI GGATC 5 cut(s) 152, 659, 744, 1055, 1097
AlwNI CAGNNNCTG 1 cut(s) 545
Ama87I CYCGRG 1 cut(s) 5
Aor13HI TCCGGA 1 cut(s) 733
AoxI GGCC 2 cut(s) 77, 877
ApeKI GCWGC 3 cut(s) 122, 203, 362
ApoI RAATTY 4 cut(s) 242, 527, 742, 1006
ArsI GACNNNNNNTTYG 4 cut(s) 678, 692, 710, 724
Asp718I GGTACC 1 cut(s) 936
AspLEI GCGC 2 cut(s) 214, 271
AsuC2I CCSGG 1 cut(s) 843
AsuII TTCGAA 1 cut(s) 949
AvaI CYCGRG 1 cut(s) 5
BaeGI GKGCMC 1 cut(s) 848
BaeI ACNNNNGTAYC 2 cut(s) 920, 953
BanI GGYRCC 3 cut(s) 268, 845, 936
BauI CACGAG 1 cut(s) 179
BbsI GAAGAC 2 cut(s) 282, 994
BbvI GCAGC 3 cut(s) 134, 190, 349
BccI CCATC 3 cut(s) 479, 557, 863
BceAI ACGGC 1 cut(s) 1061
BcgI CGANNNNNNTGC 2 cut(s) 344, 378
BciT130I CCWGG 1 cut(s) 1065
BciVI GTATCC 1 cut(s) 445
BcnI CCSGG 1 cut(s) 843
BcoDI GTCTC 3 cut(s) 397, 674, 733
BfaI CTAG 3 cut(s) 48, 692, 926
BfoI RGCGCY 1 cut(s) 272
BfuAI ACCTGC 1 cut(s) 801
BfuI GTATCC 1 cut(s) 445
BglII AGATCT 1 cut(s) 438
BisI GCNGC 6 cut(s) 120, 123, 173, 204, 363, 1176
BlsI GCNGC 6 cut(s) 121, 124, 174, 205, 364, 1177
BmcAI AGTACT 1 cut(s) 788
Bme1390I CCNGG 2 cut(s) 843, 1065
BmeT110I CYCGRG 1 cut(s) 5
BmiI GGNNCC 6 cut(s) 111, 165, 270, 847, 938, 1041
BmrFI CCNGG 2 cut(s) 843, 1065
BmrI ACTGGG 1 cut(s) 394
BmsI GCATC 3 cut(s) 532, 574, 624
BmuI ACTGGG 1 cut(s) 394
BpiI GAAGAC 2 cut(s) 282, 994
BpmI CTGGAG 1 cut(s) 650
Bpu14I TTCGAA 1 cut(s) 949
BpuMI CCSGG 1 cut(s) 843
BsaBI GATNNNNATC 1 cut(s) 1094
BsaHI GRCGYC 1 cut(s) 269
BsaI GGTCTC 2 cut(s) 397, 674
BsaJI CCNNGG 2 cut(s) 643, 1064
BsaWI WCCGGW 1 cut(s) 733
BsaXI ACNNNNNCTCC 2 cut(s) 711, 741
Bse118I RCCGGY 1 cut(s) 395
Bse1I ACTGG 3 cut(s) 111, 389, 890
Bse3DI GCAATG 1 cut(s) 279
Bse8I GATNNNNATC 1 cut(s) 1094
BseAI TCCGGA 1 cut(s) 733
BseBI CCWGG 1 cut(s) 1065
BseDI CCNNGG 2 cut(s) 643, 1064
BseGI GGATG 2 cut(s) 490, 556
BseJI GATNNNNATC 1 cut(s) 1094
BseMI GCAATG 1 cut(s) 279
BseMII CTCAG 4 cut(s) 39, 461, 471, 670
BseNI ACTGG 3 cut(s) 111, 389, 890
BseRI GAGGAG 1 cut(s) 156
BseSI GKGCMC 1 cut(s) 848
BseXI GCAGC 3 cut(s) 134, 190, 349
BseYI CCCAGC 1 cut(s) 208
BsgI GTGCAG 1 cut(s) 1152
Bsh1236I CGCG 2 cut(s) 214, 449
BshFI GGCC 2 cut(s) 79, 879
BshNI GGYRCC 3 cut(s) 268, 845, 936
BsiHKCI CYCGRG 1 cut(s) 5
BsiSI CCGG 5 cut(s) 161, 272, 396, 734, 842
BslFI GGGAC 3 cut(s) 315, 477, 680
BsmAI GTCTC 3 cut(s) 397, 674, 733
BsmFI GGGAC 3 cut(s) 315, 477, 680
BsnI GGCC 2 cut(s) 79, 879
Bso31I GGTCTC 2 cut(s) 397, 674
BsoBI CYCGRG 1 cut(s) 5
Bsp119I TTCGAA 1 cut(s) 949
Bsp1286I GDGCHC 1 cut(s) 848
Bsp13I TCCGGA 1 cut(s) 733
Bsp1407I TGTACA 1 cut(s) 597
Bsp19I CCATGG 1 cut(s) 643
BspACI CCGC 8 cut(s) 119, 173, 323, 399, 449, 1116, 1144, 1176
BspANI GGCC 2 cut(s) 79, 879
BspCNI CTCAG 4 cut(s) 38, 462, 472, 669
BspEI TCCGGA 1 cut(s) 733
BspFNI CGCG 2 cut(s) 214, 449
BspHI TCATGA 1 cut(s) 768
BspLI GGNNCC 6 cut(s) 111, 165, 270, 847, 938, 1041
BspMI ACCTGC 1 cut(s) 801
BspPI GGATC 5 cut(s) 152, 659, 744, 1055, 1097
BspT104I TTCGAA 1 cut(s) 949
BspT107I GGYRCC 3 cut(s) 268, 845, 936
BspTNI GGTCTC 2 cut(s) 397, 674
BsrDI GCAATG 1 cut(s) 279
BsrFI RCCGGY 1 cut(s) 395
BsrGI TGTACA 1 cut(s) 597
BsrI ACTGG 3 cut(s) 111, 389, 890
BssAI RCCGGY 1 cut(s) 395
BssECI CCNNGG 2 cut(s) 643, 1064
BssNAI GTATAC 1 cut(s) 978
BssNI GRCGYC 1 cut(s) 269
BssSI CACGAG 1 cut(s) 179
BssT1I CCWWGG 1 cut(s) 643
Bst1107I GTATAC 1 cut(s) 978
Bst2BI CACGAG 1 cut(s) 179
Bst2UI CCWGG 1 cut(s) 1065
Bst4CI ACNGT 3 cut(s) 425, 434, 521
Bst6I CTCTTC 1 cut(s) 98
BstACI GRCGYC 1 cut(s) 269
BstAUI TGTACA 1 cut(s) 597
BstBI TTCGAA 1 cut(s) 949
BstC8I GCNNGC 1 cut(s) 960
BstDEI CTNAG 5 cut(s) 25, 470, 480, 656, 932
BstDSI CCRYGG 1 cut(s) 643
BstF5I GGATG 2 cut(s) 490, 556
BstFNI CGCG 2 cut(s) 214, 449
BstH2I RGCGCY 1 cut(s) 272
BstHHI GCGC 2 cut(s) 214, 271
BstMAI GTCTC 3 cut(s) 397, 674, 733
BstMWI GCNNNNNNNGC 4 cut(s) 209, 218, 266, 1175
BstNI CCWGG 1 cut(s) 1065
BstNSI RCATGY 2 cut(s) 229, 1175
BstSCI CCNGG 2 cut(s) 841, 1063
BstSLI GKGCMC 1 cut(s) 848
BstUI CGCG 2 cut(s) 214, 449
BstV1I GCAGC 3 cut(s) 134, 190, 349
BstV2I GAAGAC 2 cut(s) 282, 994
BstX2I RGATCY 1 cut(s) 438
BstYI RGATCY 1 cut(s) 438
BstZ17I GTATAC 1 cut(s) 978
BsuI GTATCC 1 cut(s) 445
BsuRI GGCC 2 cut(s) 79, 879
BtgI CCRYGG 1 cut(s) 643
BtsCI GGATG 2 cut(s) 490, 556
BveI ACCTGC 1 cut(s) 801
Cac8I GCNNGC 1 cut(s) 960
CaiI CAGNNNCTG 1 cut(s) 545
CciI TCATGA 1 cut(s) 768
CfoI GCGC 2 cut(s) 214, 271
Cfr10I RCCGGY 1 cut(s) 395
Csp6I GTAC 3 cut(s) 598, 787, 937
CviAII CATG 8 cut(s) 75, 226, 568, 644, 769, 967, 1172, 1182
CviQI GTAC 3 cut(s) 598, 787, 937
DdeI CTNAG 5 cut(s) 25, 470, 480, 656, 932
DinI GGCGCC 1 cut(s) 270
DrdI GACNNNNNNGTC 1 cut(s) 332
DseDI GACNNNNNNGTC 1 cut(s) 332
Eam1104I CTCTTC 1 cut(s) 98
EarI CTCTTC 1 cut(s) 98
Eco130I CCWWGG 1 cut(s) 643
Eco31I GGTCTC 2 cut(s) 397, 674
Eco88I CYCGRG 1 cut(s) 5
EcoRII CCWGG 1 cut(s) 1063
EcoT14I CCWWGG 1 cut(s) 643
EgeI GGCGCC 1 cut(s) 270
EheI GGCGCC 1 cut(s) 270
ErhI CCWWGG 1 cut(s) 643
FaeI CATG 8 cut(s) 78, 229, 571, 647, 772, 970, 1175, 1185
FaqI GGGAC 3 cut(s) 315, 477, 680
FatI CATG 8 cut(s) 74, 225, 567, 643, 768, 966, 1171, 1181
FauI CCCGC 1 cut(s) 392
FauNDI CATATG 1 cut(s) 996
FblI GTMKAC 1 cut(s) 977
Fnu4HI GCNGC 6 cut(s) 120, 123, 173, 204, 363, 1176
FokI GGATG 2 cut(s) 497, 563
Fsp4HI GCNGC 6 cut(s) 120, 123, 173, 204, 363, 1176
FspBI CTAG 3 cut(s) 48, 692, 926
GlaI GCGC 2 cut(s) 213, 270
GluI GCNGC 6 cut(s) 120, 123, 173, 204, 363, 1176
GsaI CCCAGC 1 cut(s) 212
GsuI CTGGAG 1 cut(s) 650
HaeII RGCGCY 1 cut(s) 272
HaeIII GGCC 2 cut(s) 79, 879
HapII CCGG 5 cut(s) 161, 272, 396, 734, 842
HhaI GCGC 2 cut(s) 214, 271
Hin1I GRCGYC 1 cut(s) 269
Hin1II CATG 8 cut(s) 78, 229, 571, 647, 772, 970, 1175, 1185
Hin6I GCGC 2 cut(s) 212, 269
HinP1I GCGC 2 cut(s) 212, 269
HincII GTYRAC 2 cut(s) 391, 504
HindII GTYRAC 2 cut(s) 391, 504
HindIII AAGCTT 1 cut(s) 533
HpaI GTTAAC 1 cut(s) 391
HpaII CCGG 5 cut(s) 161, 272, 396, 734, 842
Hpy166II GTNNAC 5 cut(s) 391, 504, 598, 978, 1121
Hpy188I TCNGA 5 cut(s) 241, 413, 438, 741, 1100
Hpy188III TCNNGA 8 cut(s) 179, 300, 428, 629, 734, 769, 1093, 1154
Hpy8I GTNNAC 5 cut(s) 391, 504, 598, 978, 1121
HpyAV CCTTC 4 cut(s) 45, 454, 869, 1028
HpyCH4III ACNGT 3 cut(s) 425, 434, 521
HpyCH4IV ACGT 2 cut(s) 347, 816
HpyCH4V TGCA 5 cut(s) 615, 725, 796, 893, 1169
HpyF10VI GCNNNNNNNGC 4 cut(s) 209, 218, 266, 1175
HpyF3I CTNAG 5 cut(s) 25, 470, 480, 656, 932
HpySE526I ACGT 2 cut(s) 347, 816
Hsp92I GRCGYC 1 cut(s) 269
Hsp92II CATG 8 cut(s) 78, 229, 571, 647, 772, 970, 1175, 1185
HspAI GCGC 2 cut(s) 212, 269
KasI GGCGCC 1 cut(s) 268
Kpn2I TCCGGA 1 cut(s) 733
KpnI GGTACC 1 cut(s) 940
KspAI GTTAAC 1 cut(s) 391
LmnI GCTCC 2 cut(s) 169, 496
Lsp1109I GCAGC 3 cut(s) 134, 190, 349
LweI GCATC 3 cut(s) 532, 574, 624
MaeI CTAG 3 cut(s) 48, 692, 926
MaeII ACGT 2 cut(s) 347, 816
MaeIII GTNAC 2 cut(s) 196, 343
MboII GAAGA 8 cut(s) 60, 66, 85, 287, 745, 786, 817, 999
MflI RGATCY 1 cut(s) 438
MhlI GDGCHC 1 cut(s) 848
MluCI AATT 6 cut(s) 242, 527, 742, 1006, 1027, 1102
Mly113I GGCGCC 1 cut(s) 269
MlyI GAGTC 8 cut(s) 17, 143, 204, 297, 351, 362, 365, 408
MmeI TCCRAC 2 cut(s) 219, 692
MnlI CCTC 6 cut(s) 146, 177, 475, 505, 625, 713
MroI TCCGGA 1 cut(s) 733
MseI TTAA 6 cut(s) 185, 231, 263, 390, 605, 1026
MspA1I CMGCKG 1 cut(s) 203
MspI CCGG 5 cut(s) 161, 272, 396, 734, 842
MspR9I CCNGG 2 cut(s) 843, 1065
MvaI CCWGG 1 cut(s) 1065
MvnI CGCG 2 cut(s) 214, 449
MwoI GCNNNNNNNGC 4 cut(s) 209, 218, 266, 1175
NarI GGCGCC 1 cut(s) 269
NciI CCSGG 1 cut(s) 843
NcoI CCATGG 1 cut(s) 643
NdeI CATATG 1 cut(s) 996
NlaIII CATG 8 cut(s) 78, 229, 571, 647, 772, 970, 1175, 1185
NlaIV GGNNCC 6 cut(s) 111, 165, 270, 847, 938, 1041
NmuCI GTSAC 2 cut(s) 196, 343
NspI RCATGY 2 cut(s) 229, 1175
NspV TTCGAA 1 cut(s) 949
PagI TCATGA 1 cut(s) 768
PcsI WCGNNNNNNNCGW 1 cut(s) 153
PfeI GAWTC 3 cut(s) 290, 914, 922
PkrI GCNGC 6 cut(s) 121, 124, 174, 205, 364, 1177
PleI GAGTC 8 cut(s) 16, 143, 203, 297, 350, 362, 364, 408
PluTI GGCGCC 1 cut(s) 272
PpsI GAGTC 8 cut(s) 16, 143, 203, 297, 350, 362, 364, 408
Psp6I CCWGG 1 cut(s) 1063
PspFI CCCAGC 1 cut(s) 208
PspGI CCWGG 1 cut(s) 1063
PspN4I GGNNCC 6 cut(s) 111, 165, 270, 847, 938, 1041
PstNI CAGNNNCTG 1 cut(s) 545
PsuI RGATCY 1 cut(s) 438
PvuII CAGCTG 1 cut(s) 203
RsaI GTAC 3 cut(s) 599, 788, 938
RsaNI GTAC 3 cut(s) 598, 787, 937
SaqAI TTAA 6 cut(s) 185, 231, 263, 390, 605, 1026
SatI GCNGC 6 cut(s) 120, 123, 173, 204, 363, 1176
ScaI AGTACT 1 cut(s) 788
SchI GAGTC 8 cut(s) 17, 143, 204, 297, 351, 362, 365, 408
ScrFI CCNGG 2 cut(s) 843, 1065
SduI GDGCHC 1 cut(s) 848
SfaNI GCATC 3 cut(s) 532, 574, 624
SfoI GGCGCC 1 cut(s) 270
SfuI TTCGAA 1 cut(s) 949
SgrAI CRCCGGYG 1 cut(s) 395
Sse9I AATT 6 cut(s) 242, 527, 742, 1006, 1027, 1102
SsiI CCGC 8 cut(s) 119, 173, 323, 399, 449, 1116, 1144, 1176
SspDI GGCGCC 1 cut(s) 268
SspI AATATT 1 cut(s) 859
SspMI CTAG 3 cut(s) 48, 692, 926
StyD4I CCNGG 2 cut(s) 841, 1063
StyI CCWWGG 1 cut(s) 643
TaaI ACNGT 3 cut(s) 425, 434, 521
TaiI ACGT 2 cut(s) 350, 819
TaqI TCGA 5 cut(s) 147, 156, 862, 949, 1149
TasI AATT 6 cut(s) 242, 527, 742, 1006, 1027, 1102
TatI WGTACW 2 cut(s) 597, 786
TauI GCSGC 3 cut(s) 122, 175, 1178
TfiI GAWTC 3 cut(s) 290, 914, 922
Tru1I TTAA 6 cut(s) 185, 231, 263, 390, 605, 1026
Tru9I TTAA 6 cut(s) 185, 231, 263, 390, 605, 1026
TseFI GTSAC 2 cut(s) 196, 343
TseI GCWGC 3 cut(s) 122, 203, 362
Tsp45I GTSAC 2 cut(s) 196, 343
TspDTI ATGAA 3 cut(s) 60, 689, 817
TspGWI ACGGA 1 cut(s) 917
XapI RAATTY 4 cut(s) 242, 527, 742, 1006
XceI RCATGY 2 cut(s) 229, 1175
XmiI GTMKAC 1 cut(s) 977
XspI CTAG 3 cut(s) 48, 692, 926
ZrmI AGTACT 1 cut(s) 788
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.