Rmu_sc0026896.1_g000001

Adipocyte plasma membrane-associated

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_multiflora
Rmu_sc0026896.1
OG0000797
Physical Location & Seq
Forward (+)
1014 .. 1373
360 bp
Loading structure...
UTR
Exon/CDS
Intron
Rmu_sc0026896.1_g000001.1.cds

Sequence Viewer

Length: 360 bp
atgtgggatataataaatactaatcagggactactgagaatagttgaggatagagtagtggagctgctgacgaataaggctgagggtgtaaaattcaagctaacagattgtgcagatgtagcgaaagatggtacgatttacatcacagatgattcatataaaaatgacttagaagacttcatctggaactttctagagggcagaccctatggtaggttactgagctacaatccatcgaccaaagagaccaaagtgcttgtccgcgacctctactatgctaatggagtagcactctctccggatcagaattatgtgatcttttgcgaaactttcatgtatgaaatatctgtgaaaccttga
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
GO:0003674 GO:0003824 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005783 GO:0012505 GO:0016020 GO:0016787 GO:0016788 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044424 GO:0044444 GO:0044464
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
Str_synth

Protein Analysis

119

Amino Acids

13.76

Weight (kDa)

4.58

Isoelectric Point (pI)

18.18

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccII CGCG 1 cut(s) 264
AccIII TCCGGA 1 cut(s) 298
AciI CCGC 1 cut(s) 262
AclWI GGATC 1 cut(s) 309
AcsI RAATTY 1 cut(s) 92
AfaI GTAC 1 cut(s) 133
AfiI CCNNNNNNNGG 1 cut(s) 213
AgsI TTSAA 1 cut(s) 97
AluBI AGCT 3 cut(s) 64, 100, 225
AluI AGCT 3 cut(s) 64, 100, 225
Alw26I GTCTC 1 cut(s) 239
AlwI GGATC 1 cut(s) 309
Aor13HI TCCGGA 1 cut(s) 298
ApeKI GCWGC 1 cut(s) 64
ApoI RAATTY 1 cut(s) 92
ArsI GACNNNNNNTTYG 2 cut(s) 243, 275
BbsI GAAGAC 1 cut(s) 180
BbvCI CCTCAGC 1 cut(s) 81
BbvI GCAGC 1 cut(s) 51
BccI CCATC 2 cut(s) 122, 241
BcoDI GTCTC 1 cut(s) 239
BfaI CTAG 1 cut(s) 194
BisI GCNGC 1 cut(s) 65
BlsI GCNGC 1 cut(s) 66
BpiI GAAGAC 1 cut(s) 180
BplI GAGNNNNNCTC 2 cut(s) 276, 308
Bpu10I CCTNAGC 1 cut(s) 81
BsaBI GATNNNNATC 1 cut(s) 140
BsaI GGTCTC 1 cut(s) 239
BsaWI WCCGGW 1 cut(s) 298
Bsc4I CCNNNNNNNGG 1 cut(s) 213
Bse8I GATNNNNATC 1 cut(s) 140
BseAI TCCGGA 1 cut(s) 298
BseJI GATNNNNATC 1 cut(s) 140
BseLI CCNNNNNNNGG 1 cut(s) 213
BseMII CTCAG 3 cut(s) 26, 72, 212
BseXI GCAGC 1 cut(s) 51
BsgI GTGCAG 1 cut(s) 132
Bsh1236I CGCG 1 cut(s) 264
BsiSI CCGG 1 cut(s) 299
BslFI GGGAC 1 cut(s) 42
BslI CCNNNNNNNGG 1 cut(s) 213
BsmAI GTCTC 1 cut(s) 239
BsmFI GGGAC 1 cut(s) 42
Bso31I GGTCTC 1 cut(s) 239
Bsp13I TCCGGA 1 cut(s) 298
Bsp143I GATC 2 cut(s) 301, 315
BspACI CCGC 1 cut(s) 262
BspCNI CTCAG 3 cut(s) 27, 73, 213
BspEI TCCGGA 1 cut(s) 298
BspFNI CGCG 1 cut(s) 264
BspPI GGATC 1 cut(s) 309
BspTNI GGTCTC 1 cut(s) 239
BssMI GATC 2 cut(s) 301, 315
BstDEI CTNAG 4 cut(s) 35, 81, 169, 221
BstENI CCTNNNNNAGG 1 cut(s) 211
BstFNI CGCG 1 cut(s) 264
BstKTI GATC 2 cut(s) 304, 318
BstMAI GTCTC 1 cut(s) 239
BstMBI GATC 2 cut(s) 301, 315
BstMWI GCNNNNNNNGC 1 cut(s) 119
BstUI CGCG 1 cut(s) 264
BstV1I GCAGC 1 cut(s) 51
BstV2I GAAGAC 1 cut(s) 180
Csp6I GTAC 1 cut(s) 132
CviAII CATG 1 cut(s) 334
CviJI RGCY 4 cut(s) 64, 80, 100, 225
CviKI_1 RGCY 4 cut(s) 64, 80, 100, 225
CviQI GTAC 1 cut(s) 132
DdeI CTNAG 4 cut(s) 35, 81, 169, 221
DpnI GATC 2 cut(s) 303, 317
DpnII GATC 2 cut(s) 301, 315
Eco31I GGTCTC 1 cut(s) 239
EcoNI CCTNNNNNAGG 1 cut(s) 211
FaeI CATG 1 cut(s) 337
FaiI YATR 8 cut(s) 11, 157, 159, 210, 276, 312, 335, 339
FaqI GGGAC 1 cut(s) 42
FatI CATG 1 cut(s) 333
Fnu4HI GCNGC 1 cut(s) 65
Fsp4HI GCNGC 1 cut(s) 65
FspBI CTAG 1 cut(s) 194
GluI GCNGC 1 cut(s) 65
HapII CCGG 1 cut(s) 299
Hin1II CATG 1 cut(s) 337
HinfI GANTC 1 cut(s) 152
HpaII CCGG 1 cut(s) 299
Hpy188I TCNGA 1 cut(s) 306
Hpy188III TCNNGA 3 cut(s) 184, 194, 299
HpyCH4V TGCA 1 cut(s) 113
HpyF10VI GCNNNNNNNGC 1 cut(s) 119
HpyF3I CTNAG 4 cut(s) 35, 81, 169, 221
Hsp92II CATG 1 cut(s) 337
Kpn2I TCCGGA 1 cut(s) 298
Kzo9I GATC 2 cut(s) 301, 315
LmnI GCTCC 1 cut(s) 61
LpnPI CCDG 3 cut(s) 11, 169, 312
Lsp1109I GCAGC 1 cut(s) 51
MaeI CTAG 1 cut(s) 194
MaeIII GTNAC 1 cut(s) 216
MalI GATC 2 cut(s) 303, 317
MboI GATC 2 cut(s) 301, 315
MboII GAAGA 1 cut(s) 185
MluCI AATT 2 cut(s) 92, 307
MnlI CCTC 4 cut(s) 40, 76, 190, 278
MroI TCCGGA 1 cut(s) 298
MspI CCGG 1 cut(s) 299
MvnI CGCG 1 cut(s) 264
MwoI GCNNNNNNNGC 1 cut(s) 119
NdeII GATC 2 cut(s) 301, 315
NlaIII CATG 1 cut(s) 337
PfeI GAWTC 1 cut(s) 152
PkrI GCNGC 1 cut(s) 66
RsaI GTAC 1 cut(s) 133
RsaNI GTAC 1 cut(s) 132
SatI GCNGC 1 cut(s) 65
Sau3AI GATC 2 cut(s) 301, 315
SetI ASST 6 cut(s) 66, 102, 218, 227, 270, 358
SgeI CNNG 8 cut(s) 38, 109, 196, 206, 269, 275, 311, 346
Sse9I AATT 2 cut(s) 92, 307
SsiI CCGC 1 cut(s) 262
SspMI CTAG 1 cut(s) 194
TaqI TCGA 1 cut(s) 236
TasI AATT 2 cut(s) 92, 307
TfiI GAWTC 1 cut(s) 152
TseI GCWGC 1 cut(s) 64
TspDTI ATGAA 4 cut(s) 144, 169, 322, 354
XagI CCTNNNNNAGG 1 cut(s) 211
XapI RAATTY 1 cut(s) 92
XbaI TCTAGA 1 cut(s) 193
XspI CTAG 1 cut(s) 194
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.