Basic Information

Type: gene

Biological Identity

Species

malus_domestica

Chromosome

Chr02

Orthogroup ID

OG0000797

Physical Location & Seq

Genomic Coordinates Reverse (-)

9742665 .. 9748004

Gene Structure 5340 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

MD02G1119900.v1.1.491

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1233 bp

ATGTGGGACAGTTTAACATTCATAACCAAACCACAAATTCAATTCAACGCCATACCCGAGTCAATGAACTCAGCAGACTCGGTTTCTGTACCCAAACCCAGCTCCAAATCATCATGGCTCTCAGCTCCAACTTCTCTGTTTCTAATCTTGATCATCCCCATTTTTGCTGCAACCCTAATCTACCAACTTGACTCGTTCGACCCGGCCCCCGTGCCGTTTAGCGAGTTGACTCGGCACTTAATCAAGAAGGCCCCATCTCAAAACTCTCGCATGCTTCGAGGAGCTGAGCGTGTGGGGTATGGAGTCCTGCTGGGGCCGGAGGACGTGGCTTATGATAAGAGATCAGGGATTATTTACACTGGCTGTGCAGACGGGTGGATGAAGCGAATCAAGAGGAACGAGTCGGAGAATCCCGAGTTTGCGGTGGAGAATTGGGTCAACACGGGCGGCAGACCGCTCGGACTCGCTTTCGGGCATCACGATGAAGTTCTAGTGGCTGATGCCGATAAGGGCTTGCTGAATGTAACAAGTGAGGGTGAGGTAAAGGTGCTGGCAGACAAGGCTGAGGGTGTAAAATTTTTACTGACGGACGCTGTAGATGTAGCAGTGGATGGCATGATTTATTTCACAGATGCTTCATATAAATACAATATGAAAGACCATGTTTGGGATATTTTGGAGGGCCGGCCTCACGGAAGACTCATGAGCTACGATTCAGCAACCAAACAGACCACAGTGCTGCTGCGCGATCTGTACTTCGCTAATGGCGTGGTGGTTTCACCGGATCAGAGTCACGTAATCTACTGCGAAACCCCAATGAGGAGGTGTAGAAAGTTTTACATACAAGGTGAGAAAAAGGGAAGCGTGGATACTTTTATTGATCATCTTCCAGGCTTGCCAGATAACATAAGATATGATGGAGAAGGCCATTACTGGATTGCAATGTCAATGGGGCTTTCATTGGCATGGGATTTGGCTGTTAGATATCCTTTCATAAGAAAAGTGATGGCAATTATGGAGAAATACAAATTAAGACCCAGTGTGGAGAAGAATGGTGGAGTACTGGCCGTTGATATAGAAGGAAATTTGATTGCTCACTACTATGATCCAGGATTGTCAATGATTTCAAGTGGCATCAAGATTGGTAATTACATTTACTGCGGTTCGCCGATTTATCCTTACATGCTCCGCCTTAACATTCAAGAAAACCCACCGATTGCAGCCATTATATGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

Str_synth

Protein Analysis

411

Amino Acids

45.79

Weight (kDa)

6.02

Isoelectric Point (pI)

42.7

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
SSL_N	PF20067	92 - 130	5.7e-06	Strictosidine synthase-like, N-terminal
SGL	PF08450	149 - 318	4.9e-15	SMP-30/Gluconolactonase/LRE-like region
Str_synth	PF03088	197 - 284	2.3e-32	Strictosidine synthase

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0000797)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT3G51420 AT3G51430 AT3G51430 AT3G51440 AT3G51450
fragaria_vesca	FvH4_1g10570 FvH4_1g10571 FvH4_1g10572
malus_domestica	MD02G1119800.v1.1 MD02G1119900.v1.1
prunus_persica	Prupe.7G178800_v2.0.a1 Prupe.7G179100_v2.0.a1
pyrus_communis	pycom02g09330 pycom02g09340 pycom02g09350 pycom15g20840
rosa_chinensis	RchiOBHm_Chr2g0097641 RchiOBHm_Chr2g0173351 RchiOBHm_Chr3g0449291 RchiOBHm_Chr3g0492501 RchiOBHm_Chr3g0492521 RchiOBHm_Chr3g0492531
rosa_laevigata	RLG00000016730 RLG00000016731 RLG00000022762 RLG00000025842
rosa_multiflora	Rmu_co8425041.1_g000001 Rmu_sc0000971.1_g000010 Rmu_sc0000971.1_g000016 Rmu_sc0004874.1_g000001 Rmu_sc0010088.1_g000002 Rmu_sc0010088.1_g000009 Rmu_sc0016955.1_g000001 Rmu_sc0020190.1_g000005 Rmu_sc0026896.1_g000001 Rmu_ssc0000282.1_g000007
rosa_roxburghii	Rroxscaffold_2G00144630 Rroxscaffold_2G00144640 Rroxscaffold_6G00392230 Rroxscaffold_6G00427290
rosa_rugosa	Rorug02G0068000 Rorug02G0068100 Rorug02G0619400 Rorug02G0619400 Rorug03G0254300
rosa_samantha	Rh2AG114400 Rh2AG114500 Rh2AG647900 Rh2BG117100 Rh2BG117300 Rh2BG658400 Rh2CG119100 Rh2CG119300 Rh2DG118100 Rh2DG673800 Rh3AG017400 Rh3AG304700 Rh3BG017500 Rh3BG340600 Rh3CG016500 Rh3CG338000 Rh3CG338100 Rh3DG017800 Rh3DG339800
rosa_wichuraiana	Rw2G008940 Rw2G008960 Rw2G053190 Rw3G001330 Rw3G026840

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccBSI	CCGCTC	1 cut(s)	457
AccII	CGCG	1 cut(s)	747
AciI	CCGC	5 cut(s)	422, 447, 455, 1161, 1189
AclWI	GGATC	2 cut(s)	792, 1100
AcoI	YGGCCR	1 cut(s)	1065
AcsI	RAATTY	3 cut(s)	36, 575, 1084
AfaI	GTAC	3 cut(s)	90, 755, 1062
AfiI	CCNNNNNNNGG	2 cut(s)	667, 819
AgsI	TTSAA	4 cut(s)	41, 46, 1128, 1202
AjiI	CACGTC	1 cut(s)	325
AjnI	CCWGG	2 cut(s)	889, 1108
AluBI	AGCT	4 cut(s)	102, 125, 284, 708
AluI	AGCT	4 cut(s)	102, 125, 284, 708
AlwI	GGATC	2 cut(s)	792, 1100
Ama87I	CYCGRG	2 cut(s)	56, 413
AoxI	GGCC	7 cut(s)	204, 249, 314, 682, 686, 925, 1065
ApeKI	GCWGC	4 cut(s)	167, 739, 742, 1220
ApoI	RAATTY	3 cut(s)	36, 575, 1084
AspLEI	GCGC	1 cut(s)	747
AspS9I	GGNCC	4 cut(s)	205, 250, 314, 682
AsuC2I	CCSGG	1 cut(s)	203
AsuHPI	GGTGA	3 cut(s)	548, 771, 860
AvaI	CYCGRG	2 cut(s)	56, 413
BarI	GAAGNNNNNNTAC	2 cut(s)	853, 885
BbsI	GAAGAC	1 cut(s)	703
BbvCI	CCTCAGC	1 cut(s)	564
BbvI	GCAGC	3 cut(s)	154, 726, 729
BccI	CCATC	4 cut(s)	262, 605, 911, 1000
BceAI	ACGGC	2 cut(s)	199, 1052
BcgI	CGANNNNNNTGC	2 cut(s)	439, 473
BciT130I	CCWGG	2 cut(s)	891, 1110
BciVI	GTATCC	1 cut(s)	862
BclI	TGATCA	2 cut(s)	150, 880
BcnI	CCSGG	1 cut(s)	203
BfaI	CTAG	1 cut(s)	491
BfmI	CTRYAG	1 cut(s)	594
BfuI	GTATCC	1 cut(s)	862
BisI	GCNGC	5 cut(s)	168, 448, 740, 743, 1221
BlpI	GCTNAGC	1 cut(s)	285
BlsI	GCNGC	5 cut(s)	169, 449, 741, 744, 1222
BmcAI	AGTACT	1 cut(s)	1062
Bme1390I	CCNGG	3 cut(s)	203, 891, 1110
BmeT110I	CYCGRG	2 cut(s)	56, 413
BmgBI	CACGTC	1 cut(s)	325
BmgT120I	GGNCC	4 cut(s)	205, 250, 314, 682
BmiI	GGNNCC	3 cut(s)	207, 252, 315
BmrFI	CCNGG	3 cut(s)	203, 891, 1110
BmrI	ACTGGG	1 cut(s)	1032
BmsI	GCATC	4 cut(s)	484, 490, 622, 1143
BmuI	ACTGGG	1 cut(s)	1032
BpiI	GAAGAC	1 cut(s)	703
Bpu10I	CCTNAGC	1 cut(s)	564
Bpu1102I	GCTNAGC	1 cut(s)	285
BpuMI	CCSGG	1 cut(s)	203
BsaAI	YACGTR	1 cut(s)	796
BsaWI	WCCGGW	1 cut(s)	781
Bsc4I	CCNNNNNNNGG	2 cut(s)	667, 819
Bse118I	RCCGGY	1 cut(s)	684
Bse1I	ACTGG	4 cut(s)	364, 938, 1038, 1068
Bse3DI	GCAATG	1 cut(s)	948
BseBI	CCWGG	2 cut(s)	891, 1110
BseGI	GGATG	3 cut(s)	153, 384, 616
BseLI	CCNNNNNNNGG	2 cut(s)	667, 819
BseMI	GCAATG	1 cut(s)	948
BseMII	CTCAG	4 cut(s)	84, 135, 276, 555
BseNI	ACTGG	4 cut(s)	364, 938, 1038, 1068
BseRI	GAGGAG	2 cut(s)	294, 835
BseXI	GCAGC	3 cut(s)	154, 726, 729
BseYI	CCCAGC	2 cut(s)	98, 310
BsgI	GTGCAG	1 cut(s)	387
Bsh1236I	CGCG	1 cut(s)	747
BshFI	GGCC	7 cut(s)	206, 251, 316, 684, 688, 927, 1067
BsiHKCI	CYCGRG	2 cut(s)	56, 413
BsiSI	CCGG	4 cut(s)	203, 317, 685, 782
BslFI	GGGAC	1 cut(s)	20
BslI	CCNNNNNNNGG	2 cut(s)	667, 819
BsmFI	GGGAC	1 cut(s)	20
BsnI	GGCC	7 cut(s)	206, 251, 316, 684, 688, 927, 1067
BsoBI	CYCGRG	2 cut(s)	56, 413
Bsp143I	GATC	6 cut(s)	150, 341, 748, 784, 880, 1105
Bsp1720I	GCTNAGC	1 cut(s)	285
BspACI	CCGC	5 cut(s)	422, 447, 455, 1161, 1189
BspANI	GGCC	7 cut(s)	206, 251, 316, 684, 688, 927, 1067
BspCNI	CTCAG	4 cut(s)	83, 134, 277, 556
BspFNI	CGCG	1 cut(s)	747
BspHI	TCATGA	1 cut(s)	702
BspLI	GGNNCC	3 cut(s)	207, 252, 315
BspPI	GGATC	2 cut(s)	792, 1100
BsrBI	CCGCTC	1 cut(s)	457
BsrDI	GCAATG	1 cut(s)	948
BsrFI	RCCGGY	1 cut(s)	684
BsrI	ACTGG	4 cut(s)	364, 938, 1038, 1068
BssAI	RCCGGY	1 cut(s)	684
BssMI	GATC	6 cut(s)	150, 341, 748, 784, 880, 1105
Bst2UI	CCWGG	2 cut(s)	891, 1110
Bst4CI	ACNGT	2 cut(s)	11, 736
BstBAI	YACGTR	1 cut(s)	796
BstC8I	GCNNGC	5 cut(s)	272, 515, 552, 686, 896
BstDEI	CTNAG	4 cut(s)	70, 121, 285, 564
BstF5I	GGATG	3 cut(s)	153, 384, 616
BstFNI	CGCG	1 cut(s)	747
BstHHI	GCGC	1 cut(s)	747
BstKTI	GATC	6 cut(s)	153, 344, 751, 787, 883, 1108
BstMBI	GATC	6 cut(s)	150, 341, 748, 784, 880, 1105
BstMWI	GCNNNNNNNGC	1 cut(s)	560
BstNI	CCWGG	2 cut(s)	891, 1110
BstNSI	RCATGY	2 cut(s)	274, 1186
BstSCI	CCNGG	3 cut(s)	201, 889, 1108
BstSFI	CTRYAG	1 cut(s)	594
BstUI	CGCG	1 cut(s)	747
BstV1I	GCAGC	3 cut(s)	154, 726, 729
BstV2I	GAAGAC	1 cut(s)	703
BsuI	GTATCC	1 cut(s)	862
BsuRI	GGCC	7 cut(s)	206, 251, 316, 684, 688, 927, 1067
BtrI	CACGTC	1 cut(s)	325
BtsCI	GGATG	3 cut(s)	153, 384, 616
BtsI	GCAGTG	1 cut(s)	612
BtsIMutI	CAGTG	4 cut(s)	357, 612, 741, 1045
Cac8I	GCNNGC	5 cut(s)	272, 515, 552, 686, 896
CciI	TCATGA	1 cut(s)	702
CfoI	GCGC	1 cut(s)	747
Cfr10I	RCCGGY	1 cut(s)	684
Cfr13I	GGNCC	4 cut(s)	205, 250, 314, 682
CseI	GACGC	1 cut(s)	599
Csp6I	GTAC	3 cut(s)	89, 754, 1061
CviAII	CATG	7 cut(s)	114, 271, 616, 662, 703, 966, 1183
CviQI	GTAC	3 cut(s)	89, 754, 1061
DdeI	CTNAG	4 cut(s)	70, 121, 285, 564
DpnI	GATC	6 cut(s)	152, 343, 750, 786, 882, 1107
DpnII	GATC	6 cut(s)	150, 341, 748, 784, 880, 1105
EaeI	YGGCCR	1 cut(s)	1065
EciI	GGCGGA	1 cut(s)	1178
Eco32I	GATATC	1 cut(s)	986
Eco88I	CYCGRG	2 cut(s)	56, 413
EcoO109I	RGGNCCY	1 cut(s)	250
EcoRII	CCWGG	2 cut(s)	889, 1108
EcoRV	GATATC	1 cut(s)	986
FaeI	CATG	7 cut(s)	117, 274, 619, 665, 706, 969, 1186
FaqI	GGGAC	1 cut(s)	20
FatI	CATG	7 cut(s)	113, 270, 615, 661, 702, 965, 1182
FbaI	TGATCA	2 cut(s)	150, 880
Fnu4HI	GCNGC	5 cut(s)	168, 448, 740, 743, 1221
FokI	GGATG	3 cut(s)	140, 391, 623
FseI	GGCCGGCC	1 cut(s)	688
Fsp4HI	GCNGC	5 cut(s)	168, 448, 740, 743, 1221
FspBI	CTAG	1 cut(s)	491
GlaI	GCGC	1 cut(s)	746
GluI	GCNGC	5 cut(s)	168, 448, 740, 743, 1221
GsaI	CCCAGC	2 cut(s)	102, 314
HaeIII	GGCC	7 cut(s)	206, 251, 316, 684, 688, 927, 1067
HapII	CCGG	4 cut(s)	203, 317, 685, 782
HgaI	GACGC	1 cut(s)	599
HhaI	GCGC	1 cut(s)	747
Hin1II	CATG	7 cut(s)	117, 274, 619, 665, 706, 969, 1186
Hin6I	GCGC	1 cut(s)	745
HinP1I	GCGC	1 cut(s)	745
HincII	GTYRAC	2 cut(s)	228, 439
HindII	GTYRAC	2 cut(s)	228, 439
HpaII	CCGG	4 cut(s)	203, 317, 685, 782
HphI	GGTGA	3 cut(s)	548, 771, 860
Hpy166II	GTNNAC	2 cut(s)	228, 439
Hpy188I	TCNGA	3 cut(s)	406, 461, 789
Hpy188III	TCNNGA	8 cut(s)	148, 244, 391, 413, 479, 703, 1138, 1202
Hpy8I	GTNNAC	2 cut(s)	228, 439
HpyAV	CCTTC	3 cut(s)	241, 917, 1073
HpyCH4III	ACNGT	2 cut(s)	11, 736
HpyCH4IV	ACGT	2 cut(s)	324, 795
HpyCH4V	TGCA	4 cut(s)	170, 368, 941, 1220
HpyF10VI	GCNNNNNNNGC	1 cut(s)	560
HpyF3I	CTNAG	4 cut(s)	70, 121, 285, 564
HpySE526I	ACGT	2 cut(s)	324, 795
Hsp92II	CATG	7 cut(s)	117, 274, 619, 665, 706, 969, 1186
HspAI	GCGC	1 cut(s)	745
KroI	GCCGGC	1 cut(s)	684
KroNI	GCCGGC	1 cut(s)	686
Ksp22I	TGATCA	2 cut(s)	150, 880
Kzo9I	GATC	6 cut(s)	150, 341, 748, 784, 880, 1105
LmnI	GCTCC	4 cut(s)	107, 130, 281, 1191
Lsp1109I	GCAGC	3 cut(s)	154, 726, 729
LweI	GCATC	4 cut(s)	484, 490, 622, 1143
MaeI	CTAG	1 cut(s)	491
MaeII	ACGT	2 cut(s)	324, 795
MaeIII	GTNAC	2 cut(s)	523, 791
MalI	GATC	6 cut(s)	152, 343, 750, 786, 882, 1107
MbiI	CCGCTC	1 cut(s)	457
MboI	GATC	6 cut(s)	150, 341, 748, 784, 880, 1105
MboII	GAAGA	3 cut(s)	708, 878, 1060
MluCI	AATT	8 cut(s)	36, 41, 430, 575, 1011, 1028, 1084, 1147
MlyI	GAGTC	9 cut(s)	68, 71, 185, 223, 312, 410, 456, 693, 799
MmeI	TCCRAC	2 cut(s)	152, 384
MroNI	GCCGGC	1 cut(s)	684
MseI	TTAA	4 cut(s)	14, 239, 1031, 1194
MslI	CAYNNNNRTG	3 cut(s)	480, 964, 1101
MspI	CCGG	4 cut(s)	203, 317, 685, 782
MspR9I	CCNGG	3 cut(s)	203, 891, 1110
MvaI	CCWGG	2 cut(s)	891, 1110
MvnI	CGCG	1 cut(s)	747
MwoI	GCNNNNNNNGC	1 cut(s)	560
NaeI	GCCGGC	1 cut(s)	686
NciI	CCSGG	1 cut(s)	203
NdeII	GATC	6 cut(s)	150, 341, 748, 784, 880, 1105
NgoMIV	GCCGGC	1 cut(s)	684
NlaIII	CATG	7 cut(s)	117, 274, 619, 665, 706, 969, 1186
NlaIV	GGNNCC	3 cut(s)	207, 252, 315
NmeAIII	GCCGAG	1 cut(s)	211
NmuCI	GTSAC	1 cut(s)	791
NspI	RCATGY	2 cut(s)	274, 1186
PaeI	GCATGC	1 cut(s)	274
PagI	TCATGA	1 cut(s)	702
PcsI	WCGNNNNNNNCGW	4 cut(s)	54, 274, 477, 765
PdiI	GCCGGC	1 cut(s)	686
PfeI	GAWTC	3 cut(s)	387, 409, 713
PfoI	TCCNGGA	1 cut(s)	1108
PkrI	GCNGC	5 cut(s)	169, 449, 741, 744, 1222
PleI	GAGTC	9 cut(s)	67, 71, 185, 223, 311, 409, 456, 693, 798
PpsI	GAGTC	9 cut(s)	67, 71, 185, 223, 311, 409, 456, 693, 798
Ppu21I	YACGTR	1 cut(s)	796
Psp6I	CCWGG	2 cut(s)	889, 1108
PspFI	CCCAGC	2 cut(s)	98, 310
PspGI	CCWGG	2 cut(s)	889, 1108
PspN4I	GGNNCC	3 cut(s)	207, 252, 315
PspPI	GGNCC	4 cut(s)	205, 250, 314, 682
RigI	GGCCGGCC	1 cut(s)	688
RsaI	GTAC	3 cut(s)	90, 755, 1062
RsaNI	GTAC	3 cut(s)	89, 754, 1061
RseI	CAYNNNNRTG	3 cut(s)	480, 964, 1101
SaqAI	TTAA	4 cut(s)	14, 239, 1031, 1194
SatI	GCNGC	5 cut(s)	168, 448, 740, 743, 1221
Sau3AI	GATC	6 cut(s)	150, 341, 748, 784, 880, 1105
Sau96I	GGNCC	4 cut(s)	205, 250, 314, 682
ScaI	AGTACT	1 cut(s)	1062
SchI	GAGTC	9 cut(s)	68, 71, 185, 223, 312, 410, 456, 693, 799
ScrFI	CCNGG	3 cut(s)	203, 891, 1110
SfaNI	GCATC	4 cut(s)	484, 490, 622, 1143
SfcI	CTRYAG	1 cut(s)	594
SmiMI	CAYNNNNRTG	3 cut(s)	480, 964, 1101
SphI	GCATGC	1 cut(s)	274
Sse9I	AATT	8 cut(s)	36, 41, 430, 575, 1011, 1028, 1084, 1147
SsiI	CCGC	5 cut(s)	422, 447, 455, 1161, 1189
SspMI	CTAG	1 cut(s)	491
StyD4I	CCNGG	3 cut(s)	201, 889, 1108
TaaI	ACNGT	2 cut(s)	11, 736
TaiI	ACGT	2 cut(s)	327, 798
TaqI	TCGA	2 cut(s)	198, 277
TasI	AATT	8 cut(s)	36, 41, 430, 575, 1011, 1028, 1084, 1147
TatI	WGTACW	2 cut(s)	753, 1060
TauI	GCSGC	1 cut(s)	450
TfiI	GAWTC	3 cut(s)	387, 409, 713
Tru1I	TTAA	4 cut(s)	14, 239, 1031, 1194
Tru9I	TTAA	4 cut(s)	14, 239, 1031, 1194
TscAI	CASTG	4 cut(s)	364, 612, 741, 1045
TseFI	GTSAC	1 cut(s)	791
TseI	GCWGC	4 cut(s)	167, 739, 742, 1220
Tsp45I	GTSAC	1 cut(s)	791
TspDTI	ATGAA	8 cut(s)	10, 80, 395, 498, 627, 668, 948, 982
TspGWI	ACGGA	2 cut(s)	602, 708
TspRI	CASTG	4 cut(s)	364, 612, 741, 1045
XapI	RAATTY	3 cut(s)	36, 575, 1084
XceI	RCATGY	2 cut(s)	274, 1186
XspI	CTAG	1 cut(s)	491
ZrmI	AGTACT	1 cut(s)	1062

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.