Basic Information

Type: gene

Biological Identity

Species

rosa_rugosa

Chromosome

GWHBQTZ00000002

Orthogroup ID

OG0000797

Physical Location & Seq

Genomic Coordinates Forward (+)

5307157 .. 5307921

Gene Structure 765 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rorug02G0068100.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 765 bp

ATGCAGGGGGTCGTGGAGGTCCATGCATCTTTGCATGAGGAGGAGTTCAACCCACCTATGAATTCAGATGTCCCTATATGCGTTGGGAAGGTCATGGCAGGGTTGACTGAGGTTAATTGTTTTAAGAATTGGGCATCAATGATATCATCCACTCTACCTAAGATGATATCATTACAGCACGCGTCGGCTTCTACAAAGAATGAAAAGAAAATGGAGATGGAGATGGGGTGGCCGAACTCGAGTTTGGTTTATGTGGGCTCAAAACGAAAGGCTACCTTTGAGCTCACCAAGGTTGGGAAAAGGTATCTGGCTCTTCCTTCCACTGAGTTGCAGGTGGATGAGAATACTACTTTGATGTTGCAGCACAAAAATGGCAAAATCATTGTTTCTCCTAAGAAAAAGAAACTTGGGCGTCCCCGCGGAAGCAAGAATAAAACCAAATCTGCTCGAGCTATTGGGATGGAGGAGCATGTGAAGAAACCTCGTAAATGGAAGAGCCAGAGGGATATAGTTGGCGAGTTTGAAGTTGCAGAGAAAGCTAGTGGCACGGTGATCTCTGAATTGGATGGGGTGGAACAGGAAGGTGTTATGGAAGGGGAGTCTCCCCTTCTAACTCCAACTGTTAGAGCAAGTTCACCCGTAGTCAAGAAATGTCAAGGTCGAAAAGTCAAGAATTCGACCAGTCAAGTTACTGTTCACTGCCACTGGACATGGGTTAGAGCAAGTCCACCGGTGCTCTTTTGCCCGGGCAAAGTGAGAGAATGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003824 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005783 GO:0012505 GO:0016020 GO:0016787 GO:0016788 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044424 GO:0044444 GO:0044464

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

Str_synth

Protein Analysis

254

Amino Acids

28.18

Weight (kDa)

9.61

Isoelectric Point (pI)

34.43

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0000797)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT3G51420 AT3G51430 AT3G51430 AT3G51440 AT3G51450
fragaria_vesca	FvH4_1g10570 FvH4_1g10571 FvH4_1g10572
malus_domestica	MD02G1119800.v1.1 MD02G1119900.v1.1
prunus_persica	Prupe.7G178800_v2.0.a1 Prupe.7G179100_v2.0.a1
pyrus_communis	pycom02g09330 pycom02g09340 pycom02g09350 pycom15g20840
rosa_chinensis	RchiOBHm_Chr2g0097641 RchiOBHm_Chr2g0173351 RchiOBHm_Chr3g0449291 RchiOBHm_Chr3g0492501 RchiOBHm_Chr3g0492521 RchiOBHm_Chr3g0492531
rosa_laevigata	RLG00000016730 RLG00000016731 RLG00000022762 RLG00000025842
rosa_multiflora	Rmu_co8425041.1_g000001 Rmu_sc0000971.1_g000010 Rmu_sc0000971.1_g000016 Rmu_sc0004874.1_g000001 Rmu_sc0010088.1_g000002 Rmu_sc0010088.1_g000009 Rmu_sc0016955.1_g000001 Rmu_sc0020190.1_g000005 Rmu_sc0026896.1_g000001 Rmu_ssc0000282.1_g000007
rosa_roxburghii	Rroxscaffold_2G00144630 Rroxscaffold_2G00144640 Rroxscaffold_6G00392230 Rroxscaffold_6G00427290
rosa_rugosa	Rorug02G0068000 Rorug02G0068100 Rorug02G0619400 Rorug02G0619400 Rorug03G0254300
rosa_samantha	Rh2AG114400 Rh2AG114500 Rh2AG647900 Rh2BG117100 Rh2BG117300 Rh2BG658400 Rh2CG119100 Rh2CG119300 Rh2DG118100 Rh2DG673800 Rh3AG017400 Rh3AG304700 Rh3BG017500 Rh3BG340600 Rh3CG016500 Rh3CG338000 Rh3CG338100 Rh3DG017800 Rh3DG339800
rosa_wichuraiana	Rw2G008940 Rw2G008960 Rw2G053190 Rw3G001330 Rw3G026840

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AarI	CACCTGC	1 cut(s)	322
Acc36I	ACCTGC	1 cut(s)	322
AccII	CGCG	2 cut(s)	182, 420
AciI	CCGC	2 cut(s)	418, 420
AcoI	YGGCCR	1 cut(s)	230
AcsI	RAATTY	2 cut(s)	61, 673
AcyI	GRCGYC	1 cut(s)	412
AfiI	CCNNNNNNNGG	1 cut(s)	294
AflIII	ACRYGT	1 cut(s)	180
AgeI	ACCGGT	1 cut(s)	730
AgsI	TTSAA	2 cut(s)	49, 524
AjuI	GAANNNNNNNTTGG	2 cut(s)	227, 259
AluBI	AGCT	3 cut(s)	283, 452, 539
AluI	AGCT	3 cut(s)	283, 452, 539
Alw21I	GWGCWC	2 cut(s)	285, 738
Alw26I	GTCTC	1 cut(s)	606
Ama87I	CYCGRG	3 cut(s)	238, 447, 745
AoxI	GGCC	1 cut(s)	230
ApeKI	GCWGC	1 cut(s)	361
ApoI	RAATTY	2 cut(s)	61, 673
AsiGI	ACCGGT	1 cut(s)	730
AspS9I	GGNCC	1 cut(s)	19
AsuC2I	CCSGG	2 cut(s)	746, 747
AsuHPI	GGTGA	3 cut(s)	277, 562, 627
AvaI	CYCGRG	3 cut(s)	238, 447, 745
AvaII	GGWCC	1 cut(s)	19
BanII	GRGCYC	2 cut(s)	260, 285
Bbv12I	GWGCWC	2 cut(s)	285, 738
BbvI	GCAGC	1 cut(s)	373
BccI	CCATC	4 cut(s)	211, 217, 454, 560
BcnI	CCSGG	2 cut(s)	746, 747
BcoDI	GTCTC	1 cut(s)	606
BfaI	CTAG	1 cut(s)	540
BfuAI	ACCTGC	1 cut(s)	322
BisI	GCNGC	1 cut(s)	362
BlsI	GCNGC	1 cut(s)	363
Bme1390I	CCNGG	2 cut(s)	746, 747
Bme18I	GGWCC	1 cut(s)	19
BmeT110I	CYCGRG	3 cut(s)	238, 447, 745
BmgT120I	GGNCC	1 cut(s)	19
BmrFI	CCNGG	2 cut(s)	746, 747
BmsI	GCATC	2 cut(s)	35, 143
BpuMI	CCSGG	2 cut(s)	746, 747
BsaHI	GRCGYC	1 cut(s)	412
BsaJI	CCNNGG	3 cut(s)	288, 418, 745
BsaWI	WCCGGW	1 cut(s)	730
BsaXI	ACNNNNNCTCC	2 cut(s)	212, 242
Bsc4I	CCNNNNNNNGG	1 cut(s)	294
Bse118I	RCCGGY	1 cut(s)	730
Bse1I	ACTGG	2 cut(s)	681, 710
BseDI	CCNNGG	3 cut(s)	288, 418, 745
BseGI	GGATG	4 cut(s)	146, 343, 465, 571
BseLI	CCNNNNNNNGG	1 cut(s)	294
BseMII	CTCAG	2 cut(s)	99, 315
BseNI	ACTGG	2 cut(s)	681, 710
BseRI	GAGGAG	3 cut(s)	53, 56, 479
BseXI	GCAGC	1 cut(s)	373
Bsh1236I	CGCG	2 cut(s)	182, 420
BshFI	GGCC	1 cut(s)	232
BshTI	ACCGGT	1 cut(s)	730
BsiHKAI	GWGCWC	2 cut(s)	285, 738
BsiHKCI	CYCGRG	3 cut(s)	238, 447, 745
BsiSI	CCGG	2 cut(s)	731, 746
BslFI	GGGAC	2 cut(s)	56, 399
BslI	CCNNNNNNNGG	1 cut(s)	294
BsmAI	GTCTC	1 cut(s)	606
BsmFI	GGGAC	2 cut(s)	56, 399
BsnI	GGCC	1 cut(s)	232
BsoBI	CYCGRG	3 cut(s)	238, 447, 745
Bsp1286I	GDGCHC	3 cut(s)	260, 285, 738
Bsp143I	GATC	1 cut(s)	552
BspACI	CCGC	2 cut(s)	418, 420
BspANI	GGCC	1 cut(s)	232
BspCNI	CTCAG	2 cut(s)	100, 316
BspFNI	CGCG	2 cut(s)	182, 420
BspMI	ACCTGC	1 cut(s)	322
BspQI	GCTCTTC	2 cut(s)	318, 488
BsrFI	RCCGGY	1 cut(s)	730
BsrI	ACTGG	2 cut(s)	681, 710
BssAI	RCCGGY	1 cut(s)	730
BssECI	CCNNGG	3 cut(s)	288, 418, 745
BssMI	GATC	1 cut(s)	552
BssNI	GRCGYC	1 cut(s)	412
BssT1I	CCWWGG	1 cut(s)	288
Bst4CI	ACNGT	3 cut(s)	550, 622, 694
Bst6I	CTCTTC	2 cut(s)	318, 488
BstACI	GRCGYC	1 cut(s)	412
BstC8I	GCNNGC	1 cut(s)	180
BstDEI	CTNAG	4 cut(s)	108, 159, 324, 393
BstDSI	CCRYGG	1 cut(s)	418
BstF5I	GGATG	4 cut(s)	146, 343, 465, 571
BstFNI	CGCG	2 cut(s)	182, 420
BstKTI	GATC	1 cut(s)	555
BstMAI	GTCTC	1 cut(s)	606
BstMBI	GATC	1 cut(s)	552
BstMWI	GCNNNNNNNGC	1 cut(s)	536
BstNSI	RCATGY	1 cut(s)	473
BstSCI	CCNGG	2 cut(s)	744, 745
BstUI	CGCG	2 cut(s)	182, 420
BstV1I	GCAGC	1 cut(s)	373
BsuRI	GGCC	1 cut(s)	232
BtgI	CCRYGG	1 cut(s)	418
BtsCI	GGATG	4 cut(s)	146, 343, 465, 571
BtsI	GCAGTG	1 cut(s)	697
BtsIMutI	CAGTG	3 cut(s)	321, 697, 703
BveI	ACCTGC	1 cut(s)	322
Cac8I	GCNNGC	1 cut(s)	180
Cfr10I	RCCGGY	1 cut(s)	730
Cfr13I	GGNCC	1 cut(s)	19
Cfr42I	CCGCGG	1 cut(s)	421
Cfr9I	CCCGGG	1 cut(s)	745
CseI	GACGC	2 cut(s)	171, 401
CspAI	ACCGGT	1 cut(s)	730
CviAII	CATG	5 cut(s)	23, 35, 94, 470, 711
CviJI	RGCY	9 cut(s)	188, 232, 258, 272, 283, 311, 452, 498, 539
CviKI_1	RGCY	9 cut(s)	188, 232, 258, 272, 283, 311, 452, 498, 539
DdeI	CTNAG	4 cut(s)	108, 159, 324, 393
DpnI	GATC	1 cut(s)	554
DpnII	GATC	1 cut(s)	552
EaeI	YGGCCR	1 cut(s)	230
Eam1104I	CTCTTC	2 cut(s)	318, 488
EarI	CTCTTC	2 cut(s)	318, 488
Ecl136II	GAGCTC	1 cut(s)	283
Eco130I	CCWWGG	1 cut(s)	288
Eco24I	GRGCYC	2 cut(s)	260, 285
Eco32I	GATATC	2 cut(s)	144, 168
Eco47I	GGWCC	1 cut(s)	19
Eco53kI	GAGCTC	1 cut(s)	283
Eco88I	CYCGRG	3 cut(s)	238, 447, 745
EcoICRI	GAGCTC	1 cut(s)	283
EcoRI	GAATTC	2 cut(s)	61, 673
EcoRV	GATATC	2 cut(s)	144, 168
EcoT14I	CCWWGG	1 cut(s)	288
EcoT22I	ATGCAT	1 cut(s)	28
EcoT38I	GRGCYC	2 cut(s)	260, 285
ErhI	CCWWGG	1 cut(s)	288
FaeI	CATG	5 cut(s)	26, 38, 97, 473, 714
FalI	AAGNNNNNCTT	2 cut(s)	260, 292
FaqI	GGGAC	2 cut(s)	56, 399
FatI	CATG	5 cut(s)	22, 34, 93, 469, 710
FauI	CCCGC	1 cut(s)	425
Fnu4HI	GCNGC	1 cut(s)	362
FokI	GGATG	4 cut(s)	133, 350, 472, 578
FriOI	GRGCYC	2 cut(s)	260, 285
Fsp4HI	GCNGC	1 cut(s)	362
FspBI	CTAG	1 cut(s)	540
GluI	GCNGC	1 cut(s)	362
HaeIII	GGCC	1 cut(s)	232
HapII	CCGG	2 cut(s)	731, 746
HgaI	GACGC	2 cut(s)	171, 401
Hin1I	GRCGYC	1 cut(s)	412
Hin1II	CATG	5 cut(s)	26, 38, 97, 473, 714
HincII	GTYRAC	1 cut(s)	105
HindII	GTYRAC	1 cut(s)	105
HinfI	GANTC	1 cut(s)	599
HpaII	CCGG	2 cut(s)	731, 746
HphI	GGTGA	3 cut(s)	277, 562, 627
Hpy166II	GTNNAC	4 cut(s)	105, 635, 697, 728
Hpy188I	TCNGA	2 cut(s)	67, 559
Hpy188III	TCNNGA	2 cut(s)	646, 670
Hpy8I	GTNNAC	4 cut(s)	105, 635, 697, 728
Hpy99I	CGWCG	1 cut(s)	187
HpyAV	CCTTC	5 cut(s)	82, 327, 575, 587, 617
HpyCH4III	ACNGT	3 cut(s)	550, 622, 694
HpyCH4V	TGCA	6 cut(s)	4, 26, 34, 331, 361, 530
HpyF10VI	GCNNNNNNNGC	1 cut(s)	536
HpyF3I	CTNAG	4 cut(s)	108, 159, 324, 393
Hsp92I	GRCGYC	1 cut(s)	412
Hsp92II	CATG	5 cut(s)	26, 38, 97, 473, 714
KspI	CCGCGG	1 cut(s)	421
Kzo9I	GATC	1 cut(s)	552
LguI	GCTCTTC	2 cut(s)	318, 488
LmnI	GCTCC	1 cut(s)	466
LpnPI	CCDG	9 cut(s)	84, 293, 317, 512, 563, 691, 694, 744, 759
Lsp1109I	GCAGC	1 cut(s)	373
LweI	GCATC	2 cut(s)	35, 143
MaeI	CTAG	1 cut(s)	540
MaeIII	GTNAC	1 cut(s)	688
MalI	GATC	1 cut(s)	554
MboI	GATC	1 cut(s)	552
MboII	GAAGA	3 cut(s)	305, 487, 505
MhlI	GDGCHC	3 cut(s)	260, 285, 738
MluCI	AATT	5 cut(s)	61, 115, 127, 560, 673
MluI	ACGCGT	1 cut(s)	180
MlyI	GAGTC	1 cut(s)	608
MmeI	TCCRAC	1 cut(s)	641
MnlI	CCTC	7 cut(s)	10, 31, 34, 103, 457, 492, 495
Mph1103I	ATGCAT	1 cut(s)	28
MseI	TTAA	2 cut(s)	114, 123
MslI	CAYNNNNRTG	1 cut(s)	369
MspA1I	CMGCKG	1 cut(s)	420
MspI	CCGG	2 cut(s)	731, 746
MspR9I	CCNGG	2 cut(s)	746, 747
MvnI	CGCG	2 cut(s)	182, 420
MwoI	GCNNNNNNNGC	1 cut(s)	536
NciI	CCSGG	2 cut(s)	746, 747
NdeII	GATC	1 cut(s)	552
NlaIII	CATG	5 cut(s)	26, 38, 97, 473, 714
NsiI	ATGCAT	1 cut(s)	28
NspI	RCATGY	1 cut(s)	473
PaeR7I	CTCGAG	2 cut(s)	238, 447
PaqCI	CACCTGC	1 cut(s)	322
PciSI	GCTCTTC	2 cut(s)	318, 488
PinAI	ACCGGT	1 cut(s)	730
PkrI	GCNGC	1 cut(s)	363
PleI	GAGTC	1 cut(s)	607
PpsI	GAGTC	1 cut(s)	607
Psp124BI	GAGCTC	1 cut(s)	285
PspPI	GGNCC	1 cut(s)	19
PspXI	VCTCGAGB	2 cut(s)	238, 447
RseI	CAYNNNNRTG	1 cut(s)	369
SacI	GAGCTC	1 cut(s)	285
SacII	CCGCGG	1 cut(s)	421
SapI	GCTCTTC	2 cut(s)	318, 488
SaqAI	TTAA	2 cut(s)	114, 123
SatI	GCNGC	1 cut(s)	362
Sau3AI	GATC	1 cut(s)	552
Sau96I	GGNCC	1 cut(s)	19
SchI	GAGTC	1 cut(s)	608
ScrFI	CCNGG	2 cut(s)	746, 747
SduI	GDGCHC	3 cut(s)	260, 285, 738
SfaNI	GCATC	2 cut(s)	35, 143
Sfr274I	CTCGAG	2 cut(s)	238, 447
Sfr303I	CCGCGG	1 cut(s)	421
SgrAI	CRCCGGYG	1 cut(s)	730
SgrBI	CCGCGG	1 cut(s)	421
SinI	GGWCC	1 cut(s)	19
SlaI	CTCGAG	2 cut(s)	238, 447
SmaI	CCCGGG	1 cut(s)	747
SmiMI	CAYNNNNRTG	1 cut(s)	369
SmlI	CTYRAG	2 cut(s)	238, 447
SmoI	CTYRAG	2 cut(s)	238, 447
SrfI	GCCCGGGC	1 cut(s)	747
Sse9I	AATT	5 cut(s)	61, 115, 127, 560, 673
SsiI	CCGC	2 cut(s)	418, 420
SspMI	CTAG	1 cut(s)	540
SstI	GAGCTC	1 cut(s)	285
StyD4I	CCNGG	2 cut(s)	744, 745
StyI	CCWWGG	1 cut(s)	288
TaaI	ACNGT	3 cut(s)	550, 622, 694
TaqI	TCGA	4 cut(s)	239, 448, 661, 677
TasI	AATT	5 cut(s)	61, 115, 127, 560, 673
Tru1I	TTAA	2 cut(s)	114, 123
Tru9I	TTAA	2 cut(s)	114, 123
TscAI	CASTG	3 cut(s)	328, 704, 710
TseI	GCWGC	1 cut(s)	361
TspDTI	ATGAA	2 cut(s)	74, 216
TspMI	CCCGGG	1 cut(s)	745
TspRI	CASTG	3 cut(s)	328, 704, 710
VpaK11BI	GGWCC	1 cut(s)	19
XapI	RAATTY	2 cut(s)	61, 673
XceI	RCATGY	1 cut(s)	473
XhoI	CTCGAG	2 cut(s)	238, 447
XmaI	CCCGGG	1 cut(s)	745
XspI	CTAG	1 cut(s)	540
Zsp2I	ATGCAT	1 cut(s)	28

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.