Basic Information

Type: gene

Biological Identity

Species

rosa_samantha

Chromosome

Chr2A

Orthogroup ID

OG0000797

Physical Location & Seq

Genomic Coordinates Reverse (-)

10237192 .. 10239169

Gene Structure 1978 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rh2AG114500.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1095 bp

ATGCCCAAGTCAAGCAACCAAGACTCGCCTTCCTCTGCAACTCAATCTACCAGAAGATCATCATCATCATGGCCCTTAAACATTCTCTTCTTCTCAATACTGCTTCCGGTGGCGGCTGCTGTGGTCCTCTACCAGCTTGACTCATTCGACCCAGCTCCTCTGCCGCTTCGCGAGTTGAGTGAGCAAATCGCGGCTGCCCGGAGTCGTAATGCTTACATGCTCAAAGGATCGGAGTTTTTGGGTGTTGGGGCTTTAGTGGGGCCAGAAGACGTTGCTTATGATTCAAAAACTGGGTTAATACCGGCGCGCGGGAGACCATTCGGACTCGCACACGGTCATAACGGAGAGCTGTTGGTGGCGGACGGGGAAAGGGGACTACTGAGAATAGACGAGGATAGAGCAGTGGAGCTGCTGACAGATGAGGCTGAGGGTGTAAAATTCAAGCTAACAGACTGTGTAGATGTAGCGAAAGATGGCATGATTTACTTCACAGATGCTTCATATAAAAACAGCGTAGAAGACTTCATCTGGGAGTTTCTAGAGGGCAGACCCCATGGTAGGTTACTGAGCTACAATCCATCGACCAAAGAGACCAAAGTGCTTGTCCGCGATCTCTACTTTGCTAATGGAGTAGCAATCTCTCCGGATCAGAATTATGTGATCTTCTGTGAAACTTTAATGAAAAGATGTAGGAAGTACCACCTGCAAGGCGAGAAGAAAGGGAGCATAGAGAACTTCATTGACAACTTGCCGGGCTCCCCGGATAATATCCGATATGATGGGGAAGGCCATTACTGGATTGCAATACCTATGGGGACTTCAGCTATTTTGAATAAAGCACTTGGGTACCGTTTTATCCGAAAAGGGATGGCAATGATGGAGAAGTATATAGTGAGCAGACCATATAAGGAGAAGAATTCTGGTGTAATGGCTGTGAATTTGGAAGGGGAACCTACTGCCCACTATTCTGATCCAGATTTATCACTCATTACAAGTGGGATCAAGATCGGAAACTACCTCTATTGCGGTTCGGTTCTCTATCCATACATCATCCGCCTTGATTTAGAACAACATCCTGCACATACCACTCTATGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003824 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005783 GO:0012505 GO:0016020 GO:0016787 GO:0016788 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044424 GO:0044444 GO:0044464

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

Str_synth

Protein Analysis

364

Amino Acids

40.48

Weight (kDa)

5.82

Isoelectric Point (pI)

41.71

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
SGL	PF08450	107 - 273	1.9e-14	SMP-30/Gluconolactonase/LRE-like region
Str_synth	PF03088	152 - 237	1.1e-31	Strictosidine synthase

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0000797)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT3G51420 AT3G51430 AT3G51430 AT3G51440 AT3G51450
fragaria_vesca	FvH4_1g10570 FvH4_1g10571 FvH4_1g10572
malus_domestica	MD02G1119800.v1.1 MD02G1119900.v1.1
prunus_persica	Prupe.7G178800_v2.0.a1 Prupe.7G179100_v2.0.a1
pyrus_communis	pycom02g09330 pycom02g09340 pycom02g09350 pycom15g20840
rosa_chinensis	RchiOBHm_Chr2g0097641 RchiOBHm_Chr2g0173351 RchiOBHm_Chr3g0449291 RchiOBHm_Chr3g0492501 RchiOBHm_Chr3g0492521 RchiOBHm_Chr3g0492531
rosa_laevigata	RLG00000016730 RLG00000016731 RLG00000022762 RLG00000025842
rosa_multiflora	Rmu_co8425041.1_g000001 Rmu_sc0000971.1_g000010 Rmu_sc0000971.1_g000016 Rmu_sc0004874.1_g000001 Rmu_sc0010088.1_g000002 Rmu_sc0010088.1_g000009 Rmu_sc0016955.1_g000001 Rmu_sc0020190.1_g000005 Rmu_sc0026896.1_g000001 Rmu_ssc0000282.1_g000007
rosa_roxburghii	Rroxscaffold_2G00144630 Rroxscaffold_2G00144640 Rroxscaffold_6G00392230 Rroxscaffold_6G00427290
rosa_rugosa	Rorug02G0068000 Rorug02G0068100 Rorug02G0619400 Rorug02G0619400 Rorug03G0254300
rosa_samantha	Rh2AG114400 Rh2AG114500 Rh2AG647900 Rh2BG117100 Rh2BG117300 Rh2BG658400 Rh2CG119100 Rh2CG119300 Rh2DG118100 Rh2DG673800 Rh3AG017400 Rh3AG304700 Rh3BG017500 Rh3BG340600 Rh3CG016500 Rh3CG338000 Rh3CG338100 Rh3DG017800 Rh3DG339800
rosa_wichuraiana	Rw2G008940 Rw2G008960 Rw2G053190 Rw3G001330 Rw3G026840

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AarI	CACCTGC	1 cut(s)	711
Acc36I	ACCTGC	1 cut(s)	711
Acc65I	GGTACC	1 cut(s)	846
AccB1I	GGYRCC	1 cut(s)	846
AccII	CGCG	5 cut(s)	171, 191, 307, 309, 609
AccIII	TCCGGA	1 cut(s)	643
AciI	CCGC	8 cut(s)	113, 164, 191, 309, 359, 607, 1026, 1054
AclWI	GGATC	4 cut(s)	235, 654, 965, 1007
AcsI	RAATTY	3 cut(s)	437, 916, 937
AcuI	CTGAAG	1 cut(s)	804
AfaI	GTAC	2 cut(s)	698, 848
AfiI	CCNNNNNNNGG	2 cut(s)	308, 558
AgsI	TTSAA	3 cut(s)	285, 442, 832
AluBI	AGCT	7 cut(s)	136, 155, 349, 409, 445, 570, 824
AluI	AGCT	7 cut(s)	136, 155, 349, 409, 445, 570, 824
Alw26I	GTCTC	2 cut(s)	307, 584
AlwI	GGATC	4 cut(s)	235, 654, 965, 1007
Aor13HI	TCCGGA	1 cut(s)	643
AoxI	GGCC	3 cut(s)	71, 260, 787
ApeKI	GCWGC	3 cut(s)	116, 194, 409
ApoI	RAATTY	3 cut(s)	437, 916, 937
ArsI	GACNNNNNNTTYG	2 cut(s)	588, 620
Asp718I	GGTACC	1 cut(s)	846
AspLEI	GCGC	2 cut(s)	307, 309
AspS9I	GGNCC	3 cut(s)	72, 124, 260
AsuC2I	CCSGG	3 cut(s)	199, 753, 761
AvaII	GGWCC	1 cut(s)	124
BaeI	ACNNNNGTAYC	2 cut(s)	830, 863
BanI	GGYRCC	1 cut(s)	846
BanII	GRGCYC	1 cut(s)	758
BbsI	GAAGAC	2 cut(s)	273, 525
BbvCI	CCTCAGC	1 cut(s)	426
BbvI	GCAGC	3 cut(s)	103, 181, 396
BccI	CCATC	5 cut(s)	467, 586, 773, 862, 871
BcnI	CCSGG	3 cut(s)	199, 753, 761
BcoDI	GTCTC	2 cut(s)	307, 584
BfaI	CTAG	1 cut(s)	539
BfuAI	ACCTGC	1 cut(s)	711
BisI	GCNGC	6 cut(s)	114, 117, 164, 192, 195, 410
BlsI	GCNGC	6 cut(s)	115, 118, 165, 193, 196, 411
Bme1390I	CCNGG	3 cut(s)	199, 753, 761
Bme18I	GGWCC	1 cut(s)	124
BmgT120I	GGNCC	3 cut(s)	72, 124, 260
BmiI	GGNNCC	4 cut(s)	261, 757, 848, 951
BmrFI	CCNGG	3 cut(s)	199, 753, 761
BmrI	ACTGGG	1 cut(s)	300
BmsI	GCATC	1 cut(s)	484
BmuI	ACTGGG	1 cut(s)	300
BpiI	GAAGAC	2 cut(s)	273, 525
Bpu10I	CCTNAGC	1 cut(s)	426
BpuMI	CCSGG	3 cut(s)	199, 753, 761
BsaBI	GATNNNNATC	2 cut(s)	61, 1004
BsaI	GGTCTC	2 cut(s)	307, 584
BsaJI	CCNNGG	2 cut(s)	553, 759
BsaWI	WCCGGW	2 cut(s)	106, 643
Bsc4I	CCNNNNNNNGG	2 cut(s)	308, 558
Bse118I	RCCGGY	1 cut(s)	301
Bse1I	ACTGG	2 cut(s)	295, 800
Bse3DI	GCAATG	1 cut(s)	879
Bse8I	GATNNNNATC	2 cut(s)	61, 1004
BseAI	TCCGGA	1 cut(s)	643
BseDI	CCNNGG	2 cut(s)	553, 759
BseGI	GGATG	3 cut(s)	873, 1050, 1072
BseJI	GATNNNNATC	2 cut(s)	61, 1004
BseLI	CCNNNNNNNGG	2 cut(s)	308, 558
BseMI	GCAATG	1 cut(s)	879
BseMII	CTCAG	3 cut(s)	371, 417, 557
BseNI	ACTGG	2 cut(s)	295, 800
BsePI	GCGCGC	1 cut(s)	305
BseRI	GAGGAG	1 cut(s)	147
BseXI	GCAGC	3 cut(s)	103, 181, 396
BseYI	CCCAGC	1 cut(s)	151
BsgI	GTGCAG	1 cut(s)	1062
Bsh1236I	CGCG	5 cut(s)	171, 191, 307, 309, 609
BshFI	GGCC	3 cut(s)	73, 262, 789
BshNI	GGYRCC	1 cut(s)	846
BsiSI	CCGG	6 cut(s)	107, 199, 302, 644, 752, 761
BslFI	GGGAC	2 cut(s)	387, 829
BslI	CCNNNNNNNGG	2 cut(s)	308, 558
BsmAI	GTCTC	2 cut(s)	307, 584
BsmFI	GGGAC	2 cut(s)	387, 829
BsnI	GGCC	3 cut(s)	73, 262, 789
Bso31I	GGTCTC	2 cut(s)	307, 584
Bsp1286I	GDGCHC	1 cut(s)	758
Bsp13I	TCCGGA	1 cut(s)	643
Bsp143I	GATC	8 cut(s)	56, 227, 610, 646, 660, 970, 999, 1005
Bsp19I	CCATGG	1 cut(s)	553
Bsp68I	TCGCGA	1 cut(s)	171
BspACI	CCGC	8 cut(s)	113, 164, 191, 309, 359, 607, 1026, 1054
BspANI	GGCC	3 cut(s)	73, 262, 789
BspCNI	CTCAG	3 cut(s)	372, 418, 558
BspEI	TCCGGA	1 cut(s)	643
BspFNI	CGCG	5 cut(s)	171, 191, 307, 309, 609
BspLI	GGNNCC	4 cut(s)	261, 757, 848, 951
BspMI	ACCTGC	1 cut(s)	711
BspPI	GGATC	4 cut(s)	235, 654, 965, 1007
BspT107I	GGYRCC	1 cut(s)	846
BspTNI	GGTCTC	2 cut(s)	307, 584
BsrDI	GCAATG	1 cut(s)	879
BsrFI	RCCGGY	1 cut(s)	301
BsrI	ACTGG	2 cut(s)	295, 800
BssAI	RCCGGY	1 cut(s)	301
BssECI	CCNNGG	2 cut(s)	553, 759
BssHII	GCGCGC	1 cut(s)	305
BssMI	GATC	8 cut(s)	56, 227, 610, 646, 660, 970, 999, 1005
BssT1I	CCWWGG	1 cut(s)	553
Bst4CI	ACNGT	3 cut(s)	335, 455, 851
Bst6I	CTCTTC	1 cut(s)	92
BstC8I	GCNNGC	1 cut(s)	307
BstDEI	CTNAG	3 cut(s)	380, 426, 566
BstDSI	CCRYGG	1 cut(s)	553
BstF5I	GGATG	3 cut(s)	873, 1050, 1072
BstFNI	CGCG	5 cut(s)	171, 191, 307, 309, 609
BstHHI	GCGC	2 cut(s)	307, 309
BstKTI	GATC	8 cut(s)	59, 230, 613, 649, 663, 973, 1002, 1008
BstMAI	GTCTC	2 cut(s)	307, 584
BstMBI	GATC	8 cut(s)	56, 227, 610, 646, 660, 970, 999, 1005
BstNSI	RCATGY	1 cut(s)	220
BstSCI	CCNGG	3 cut(s)	197, 751, 759
BstUI	CGCG	5 cut(s)	171, 191, 307, 309, 609
BstV1I	GCAGC	3 cut(s)	103, 181, 396
BstV2I	GAAGAC	2 cut(s)	273, 525
BsuRI	GGCC	3 cut(s)	73, 262, 789
BtgI	CCRYGG	1 cut(s)	553
BtsCI	GGATG	3 cut(s)	873, 1050, 1072
BtsI	GCAGTG	1 cut(s)	408
BtsIMutI	CAGTG	1 cut(s)	408
BtuMI	TCGCGA	1 cut(s)	171
BveI	ACCTGC	1 cut(s)	711
Cac8I	GCNNGC	1 cut(s)	307
CfoI	GCGC	2 cut(s)	307, 309
Cfr10I	RCCGGY	1 cut(s)	301
Cfr13I	GGNCC	3 cut(s)	72, 124, 260
Csp6I	GTAC	2 cut(s)	697, 847
CviAII	CATG	4 cut(s)	69, 217, 478, 554
CviQI	GTAC	2 cut(s)	697, 847
DdeI	CTNAG	3 cut(s)	380, 426, 566
DpnI	GATC	8 cut(s)	58, 229, 612, 648, 662, 972, 1001, 1007
DpnII	GATC	8 cut(s)	56, 227, 610, 646, 660, 970, 999, 1005
Eam1104I	CTCTTC	1 cut(s)	92
EarI	CTCTTC	1 cut(s)	92
EciI	GGCGGA	2 cut(s)	374, 1043
Eco130I	CCWWGG	1 cut(s)	553
Eco24I	GRGCYC	1 cut(s)	758
Eco31I	GGTCTC	2 cut(s)	307, 584
Eco47I	GGWCC	1 cut(s)	124
Eco57I	CTGAAG	1 cut(s)	804
EcoRI	GAATTC	1 cut(s)	916
EcoT14I	CCWWGG	1 cut(s)	553
EcoT38I	GRGCYC	1 cut(s)	758
ErhI	CCWWGG	1 cut(s)	553
FaeI	CATG	4 cut(s)	72, 220, 481, 557
FaqI	GGGAC	2 cut(s)	387, 829
FatI	CATG	4 cut(s)	68, 216, 477, 553
FauI	CCCGC	1 cut(s)	302
Fnu4HI	GCNGC	6 cut(s)	114, 117, 164, 192, 195, 410
FokI	GGATG	3 cut(s)	880, 1037, 1059
FriOI	GRGCYC	1 cut(s)	758
Fsp4HI	GCNGC	6 cut(s)	114, 117, 164, 192, 195, 410
FspBI	CTAG	1 cut(s)	539
GlaI	GCGC	2 cut(s)	306, 308
GluI	GCNGC	6 cut(s)	114, 117, 164, 192, 195, 410
GsaI	CCCAGC	1 cut(s)	155
HaeIII	GGCC	3 cut(s)	73, 262, 789
HapII	CCGG	6 cut(s)	107, 199, 302, 644, 752, 761
HhaI	GCGC	2 cut(s)	307, 309
Hin1II	CATG	4 cut(s)	72, 220, 481, 557
Hin6I	GCGC	2 cut(s)	305, 307
HinP1I	GCGC	2 cut(s)	305, 307
HinfI	GANTC	5 cut(s)	23, 140, 202, 281, 324
HpaII	CCGG	6 cut(s)	107, 199, 302, 644, 752, 761
Hpy188I	TCNGA	7 cut(s)	232, 323, 651, 773, 860, 970, 1010
Hpy188III	TCNNGA	5 cut(s)	170, 539, 644, 974, 1003
HpyAV	CCTTC	3 cut(s)	39, 779, 938
HpyCH4III	ACNGT	3 cut(s)	335, 455, 851
HpyCH4IV	ACGT	1 cut(s)	270
HpyCH4V	TGCA	4 cut(s)	38, 706, 803, 1079
HpyF3I	CTNAG	3 cut(s)	380, 426, 566
HpySE526I	ACGT	1 cut(s)	270
Hsp92II	CATG	4 cut(s)	72, 220, 481, 557
HspAI	GCGC	2 cut(s)	305, 307
Kpn2I	TCCGGA	1 cut(s)	643
KpnI	GGTACC	1 cut(s)	850
Kzo9I	GATC	8 cut(s)	56, 227, 610, 646, 660, 970, 999, 1005
LmnI	GCTCC	4 cut(s)	160, 406, 723, 761
Lsp1109I	GCAGC	3 cut(s)	103, 181, 396
LweI	GCATC	1 cut(s)	484
MaeI	CTAG	1 cut(s)	539
MaeII	ACGT	1 cut(s)	270
MaeIII	GTNAC	1 cut(s)	561
MalI	GATC	8 cut(s)	58, 229, 612, 648, 662, 972, 1001, 1007
MboI	GATC	8 cut(s)	56, 227, 610, 646, 660, 970, 999, 1005
MboII	GAAGA	8 cut(s)	66, 79, 82, 278, 530, 655, 727, 925
MhlI	GDGCHC	1 cut(s)	758
MluCI	AATT	4 cut(s)	437, 652, 916, 937
MlyI	GAGTC	4 cut(s)	17, 134, 211, 318
MnlI	CCTC	8 cut(s)	43, 137, 168, 385, 415, 421, 535, 1028
MroI	TCCGGA	1 cut(s)	643
MseI	TTAA	3 cut(s)	77, 296, 677
MslI	CAYNNNNRTG	1 cut(s)	67
MspI	CCGG	6 cut(s)	107, 199, 302, 644, 752, 761
MspR9I	CCNGG	3 cut(s)	199, 753, 761
MvnI	CGCG	5 cut(s)	171, 191, 307, 309, 609
NciI	CCSGG	3 cut(s)	199, 753, 761
NcoI	CCATGG	1 cut(s)	553
NdeII	GATC	8 cut(s)	56, 227, 610, 646, 660, 970, 999, 1005
NlaIII	CATG	4 cut(s)	72, 220, 481, 557
NlaIV	GGNNCC	4 cut(s)	261, 757, 848, 951
NruI	TCGCGA	1 cut(s)	171
NspI	RCATGY	1 cut(s)	220
PaqCI	CACCTGC	1 cut(s)	711
PauI	GCGCGC	1 cut(s)	305
PfeI	GAWTC	1 cut(s)	281
PkrI	GCNGC	6 cut(s)	115, 118, 165, 193, 196, 411
PleI	GAGTC	4 cut(s)	17, 134, 210, 318
PpsI	GAGTC	4 cut(s)	17, 134, 210, 318
PspFI	CCCAGC	1 cut(s)	151
PspN4I	GGNNCC	4 cut(s)	261, 757, 848, 951
PspPI	GGNCC	3 cut(s)	72, 124, 260
PteI	GCGCGC	1 cut(s)	305
RruI	TCGCGA	1 cut(s)	171
RsaI	GTAC	2 cut(s)	698, 848
RsaNI	GTAC	2 cut(s)	697, 847
RseI	CAYNNNNRTG	1 cut(s)	67
SaqAI	TTAA	3 cut(s)	77, 296, 677
SatI	GCNGC	6 cut(s)	114, 117, 164, 192, 195, 410
Sau3AI	GATC	8 cut(s)	56, 227, 610, 646, 660, 970, 999, 1005
Sau96I	GGNCC	3 cut(s)	72, 124, 260
SchI	GAGTC	4 cut(s)	17, 134, 211, 318
ScrFI	CCNGG	3 cut(s)	199, 753, 761
SduI	GDGCHC	1 cut(s)	758
SfaNI	GCATC	1 cut(s)	484
SinI	GGWCC	1 cut(s)	124
SmiMI	CAYNNNNRTG	1 cut(s)	67
Sse9I	AATT	4 cut(s)	437, 652, 916, 937
SsiI	CCGC	8 cut(s)	113, 164, 191, 309, 359, 607, 1026, 1054
SspMI	CTAG	1 cut(s)	539
StyD4I	CCNGG	3 cut(s)	197, 751, 759
StyI	CCWWGG	1 cut(s)	553
TaaI	ACNGT	3 cut(s)	335, 455, 851
TaiI	ACGT	1 cut(s)	273
TaqI	TCGA	2 cut(s)	147, 581
TasI	AATT	4 cut(s)	437, 652, 916, 937
TauI	GCSGC	3 cut(s)	116, 166, 194
TfiI	GAWTC	1 cut(s)	281
Tru1I	TTAA	3 cut(s)	77, 296, 677
Tru9I	TTAA	3 cut(s)	77, 296, 677
TscAI	CASTG	1 cut(s)	408
TseI	GCWGC	3 cut(s)	116, 194, 409
TspDTI	ATGAA	4 cut(s)	489, 514, 695, 727
TspGWI	ACGGA	1 cut(s)	357
TspRI	CASTG	1 cut(s)	408
VpaK11BI	GGWCC	1 cut(s)	124
XapI	RAATTY	3 cut(s)	437, 916, 937
XbaI	TCTAGA	1 cut(s)	538
XceI	RCATGY	1 cut(s)	220
XspI	CTAG	1 cut(s)	539

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.