Rmu_sc0004874.1_g000001

Adipocyte plasma membrane-associated

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_multiflora
Rmu_sc0004874.1
OG0000797
Physical Location & Seq
Forward (+)
5912 .. 8019
2108 bp
Loading structure...
UTR
Exon/CDS
Intron
Rmu_sc0004874.1_g000001.1.cds

Sequence Viewer

Length: 1185 bp
atgcccgagtcaaacaaccataactcaccttccccttcaactcaagctagtagaagatcatcgtcatcttcatcatggcctttgaattttctcttattctcaatactggttcctgtggcggcagctctgctaatcctctaccagctcgactcgttcgacccggttcctctgccgcttcacgagttgagccaccgagtcacagctgctccagcgagtaatgctcacatgctcaaagggtcggagtttataggtgttggggctttaatggcgccggaagacattgcttatgattcgaagtcgggactcatttacacgggctgtgcggacgggtgggtcaagcgagtcacgttgaacgagtcggttgctgactcggtggttgagaactgggttaacaccggcgggagaccacttggactcgctcacggtcatgacggtcagctgttggtcgcggatacagagaagggactactgagtataactgaggatggagaagtggagctgttgactgatgaggctgagggtgtgaaattcaagcttacagatgctgtggatgtagcaaaagatggcgtgatttacttcacagatgcttcgtatatgtacagcttaaaagacttcttcttggaccttttggagggcaaaccccatggtagatttctcagctacgatccaactatgaaagagaccaaagtgctagtccccgacctctactttgctaatggagttgcagtctctcctgatcagaattttgtgatcttctgtgaaagtgtcatgagaagatgtaaaaagtactacctgcaaggcgagaagaaaggaaacgtagagaacttcattgacaacttgccggggccccctgataatattcgatatgatggagaaggccattactggattgcatttcctacggggattacagattcttggaatctaacaattaggtacccttttattcgaaaatggctggcaatcatggagaagtatacagcaagaagaccacatatggagaaaaattctggtgtaatggctgttaatttggaaggggaacctattgcccactattttgatccagggttatcagccatttcaagtgggatcaagatcagaaattacctatactgcggttcaattttcaatccatacattatccgcttcgatctggaacgacatcctgcacatgtcgctgcatga
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
GO:0003674 GO:0003824 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005783 GO:0012505 GO:0016020 GO:0016787 GO:0016788 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044424 GO:0044444 GO:0044464
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
Str_synth

Protein Analysis

394

Amino Acids

43.75

Weight (kDa)

5.39

Isoelectric Point (pI)

40.32

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Style Settings
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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AasI GACNNNNNNGTC 1 cut(s) 332
Acc36I ACCTGC 1 cut(s) 801
Acc65I GGTACC 1 cut(s) 936
AccB1I GGYRCC 2 cut(s) 268, 936
AccI GTMKAC 1 cut(s) 977
AccII CGCG 1 cut(s) 449
AciI CCGC 7 cut(s) 119, 173, 323, 399, 449, 1116, 1144
AclWI GGATC 3 cut(s) 659, 1055, 1097
AcsI RAATTY 4 cut(s) 85, 527, 742, 1006
AcyI GRCGYC 1 cut(s) 269
AfaI GTAC 3 cut(s) 599, 788, 938
AfiI CCNNNNNNNGG 1 cut(s) 631
AflIII ACRYGT 1 cut(s) 1171
AgsI TTSAA 7 cut(s) 39, 85, 352, 532, 1083, 1122, 1129
AjnI CCWGG 1 cut(s) 1063
AluBI AGCT 9 cut(s) 47, 125, 145, 203, 439, 499, 535, 603, 660
AluI AGCT 9 cut(s) 47, 125, 145, 203, 439, 499, 535, 603, 660
Alw26I GTCTC 3 cut(s) 397, 674, 733
AlwI GGATC 3 cut(s) 659, 1055, 1097
AlwNI CAGNNNCTG 1 cut(s) 545
Ama87I CYCGRG 1 cut(s) 5
AoxI GGCC 3 cut(s) 77, 845, 877
ApaI GGGCCC 1 cut(s) 849
ApeKI GCWGC 3 cut(s) 122, 203, 1178
ApoI RAATTY 4 cut(s) 85, 527, 742, 1006
ArsI GACNNNNNNTTYG 4 cut(s) 678, 692, 710, 724
Asp718I GGTACC 1 cut(s) 936
AspLEI GCGC 1 cut(s) 271
AspS9I GGNCC 3 cut(s) 622, 845, 846
AsuC2I CCSGG 2 cut(s) 161, 843
AsuHPI GGTGA 1 cut(s) 18
AsuII TTCGAA 2 cut(s) 293, 949
AvaI CYCGRG 1 cut(s) 5
AvaII GGWCC 1 cut(s) 622
BaeGI GKGCMC 1 cut(s) 849
BanI GGYRCC 2 cut(s) 268, 936
BanII GRGCYC 1 cut(s) 849
BauI CACGAG 1 cut(s) 179
BbsI GAAGAC 2 cut(s) 282, 994
BbvCI CCTCAGC 1 cut(s) 516
BbvI GCAGC 3 cut(s) 134, 190, 1165
BccI CCATC 3 cut(s) 479, 557, 863
BcgI CGANNNNNNTGC 2 cut(s) 344, 378
BciT130I CCWGG 1 cut(s) 1065
BciVI GTATCC 1 cut(s) 445
BclI TGATCA 1 cut(s) 736
BcnI CCSGG 2 cut(s) 161, 843
BcoDI GTCTC 3 cut(s) 397, 674, 733
BfaI CTAG 2 cut(s) 48, 692
BfoI RGCGCY 1 cut(s) 272
BfuAI ACCTGC 1 cut(s) 801
BfuI GTATCC 1 cut(s) 445
BisI GCNGC 5 cut(s) 120, 123, 173, 204, 1179
BlsI GCNGC 5 cut(s) 121, 124, 174, 205, 1180
BmcAI AGTACT 1 cut(s) 788
Bme1390I CCNGG 3 cut(s) 161, 843, 1065
Bme18I GGWCC 1 cut(s) 622
BmeT110I CYCGRG 1 cut(s) 5
BmgT120I GGNCC 3 cut(s) 622, 845, 846
BmiI GGNNCC 8 cut(s) 111, 165, 270, 846, 847, 848, 938, 1041
BmrFI CCNGG 3 cut(s) 161, 843, 1065
BmrI ACTGGG 1 cut(s) 394
BmsI GCATC 2 cut(s) 532, 574
BmuI ACTGGG 1 cut(s) 394
BpiI GAAGAC 2 cut(s) 282, 994
BplI GAGNNNNNCTC 2 cut(s) 205, 237
BpmI CTGGAG 1 cut(s) 192
Bpu10I CCTNAGC 1 cut(s) 516
Bpu14I TTCGAA 2 cut(s) 293, 949
BpuEI CTTGAG 1 cut(s) 27
BpuMI CCSGG 2 cut(s) 161, 843
BsaBI GATNNNNATC 1 cut(s) 1094
BsaHI GRCGYC 1 cut(s) 269
BsaI GGTCTC 2 cut(s) 397, 674
BsaJI CCNNGG 3 cut(s) 643, 842, 1064
BsaXI ACNNNNNCTCC 4 cut(s) 190, 220, 711, 741
Bsc4I CCNNNNNNNGG 1 cut(s) 631
Bse118I RCCGGY 1 cut(s) 395
Bse1I ACTGG 3 cut(s) 111, 389, 890
Bse3DI GCAATG 1 cut(s) 279
Bse8I GATNNNNATC 1 cut(s) 1094
BseBI CCWGG 1 cut(s) 1065
BseDI CCNNGG 3 cut(s) 643, 842, 1064
BseGI GGATG 3 cut(s) 490, 556, 1162
BseJI GATNNNNATC 1 cut(s) 1094
BseLI CCNNNNNNNGG 1 cut(s) 631
BseMI GCAATG 1 cut(s) 279
BseMII CTCAG 4 cut(s) 461, 471, 507, 670
BseNI ACTGG 3 cut(s) 111, 389, 890
BseSI GKGCMC 1 cut(s) 849
BseXI GCAGC 3 cut(s) 134, 190, 1165
BsgI GTGCAG 1 cut(s) 1152
Bsh1236I CGCG 1 cut(s) 449
BshFI GGCC 3 cut(s) 79, 847, 879
BshNI GGYRCC 2 cut(s) 268, 936
BsiHKCI CYCGRG 1 cut(s) 5
BsiSI CCGG 4 cut(s) 161, 272, 396, 842
BslFI GGGAC 3 cut(s) 315, 477, 680
BslI CCNNNNNNNGG 1 cut(s) 631
BsmAI GTCTC 3 cut(s) 397, 674, 733
BsmFI GGGAC 3 cut(s) 315, 477, 680
BsnI GGCC 3 cut(s) 79, 847, 879
Bso31I GGTCTC 2 cut(s) 397, 674
BsoBI CYCGRG 1 cut(s) 5
Bsp119I TTCGAA 2 cut(s) 293, 949
Bsp120I GGGCCC 1 cut(s) 845
Bsp1286I GDGCHC 1 cut(s) 849
Bsp1407I TGTACA 1 cut(s) 597
Bsp143I GATC 8 cut(s) 56, 664, 736, 750, 1060, 1089, 1095, 1150
Bsp19I CCATGG 1 cut(s) 643
BspACI CCGC 7 cut(s) 119, 173, 323, 399, 449, 1116, 1144
BspANI GGCC 3 cut(s) 79, 847, 879
BspCNI CTCAG 4 cut(s) 462, 472, 508, 669
BspFNI CGCG 1 cut(s) 449
BspHI TCATGA 2 cut(s) 427, 768
BspLI GGNNCC 8 cut(s) 111, 165, 270, 846, 847, 848, 938, 1041
BspMI ACCTGC 1 cut(s) 801
BspPI GGATC 3 cut(s) 659, 1055, 1097
BspT104I TTCGAA 2 cut(s) 293, 949
BspT107I GGYRCC 2 cut(s) 268, 936
BspTNI GGTCTC 2 cut(s) 397, 674
BsrDI GCAATG 1 cut(s) 279
BsrFI RCCGGY 1 cut(s) 395
BsrGI TGTACA 1 cut(s) 597
BsrI ACTGG 3 cut(s) 111, 389, 890
BssAI RCCGGY 1 cut(s) 395
BssECI CCNNGG 3 cut(s) 643, 842, 1064
BssMI GATC 8 cut(s) 56, 664, 736, 750, 1060, 1089, 1095, 1150
BssNAI GTATAC 1 cut(s) 978
BssNI GRCGYC 1 cut(s) 269
BssSI CACGAG 1 cut(s) 179
BssT1I CCWWGG 1 cut(s) 643
Bst1107I GTATAC 1 cut(s) 978
Bst2BI CACGAG 1 cut(s) 179
Bst2UI CCWGG 1 cut(s) 1065
Bst4CI ACNGT 2 cut(s) 425, 434
BstACI GRCGYC 1 cut(s) 269
BstAUI TGTACA 1 cut(s) 597
BstBI TTCGAA 2 cut(s) 293, 949
BstC8I GCNNGC 1 cut(s) 960
BstDEI CTNAG 4 cut(s) 470, 480, 516, 656
BstDSI CCRYGG 1 cut(s) 643
BstENI CCTNNNNNAGG 1 cut(s) 629
BstF5I GGATG 3 cut(s) 490, 556, 1162
BstFNI CGCG 1 cut(s) 449
BstH2I RGCGCY 1 cut(s) 272
BstHHI GCGC 1 cut(s) 271
BstKTI GATC 8 cut(s) 59, 667, 739, 753, 1063, 1092, 1098, 1153
BstMAI GTCTC 3 cut(s) 397, 674, 733
BstMBI GATC 8 cut(s) 56, 664, 736, 750, 1060, 1089, 1095, 1150
BstMWI GCNNNNNNNGC 4 cut(s) 209, 218, 266, 1175
BstNI CCWGG 1 cut(s) 1065
BstNSI RCATGY 2 cut(s) 229, 1175
BstSCI CCNGG 3 cut(s) 159, 841, 1063
BstSLI GKGCMC 1 cut(s) 849
BstUI CGCG 1 cut(s) 449
BstV1I GCAGC 3 cut(s) 134, 190, 1165
BstV2I GAAGAC 2 cut(s) 282, 994
BstZ17I GTATAC 1 cut(s) 978
BsuI GTATCC 1 cut(s) 445
BsuRI GGCC 3 cut(s) 79, 847, 879
BtgI CCRYGG 1 cut(s) 643
BtsCI GGATG 3 cut(s) 490, 556, 1162
BveI ACCTGC 1 cut(s) 801
Cac8I GCNNGC 1 cut(s) 960
CaiI CAGNNNCTG 1 cut(s) 545
CciI TCATGA 2 cut(s) 427, 768
CfoI GCGC 1 cut(s) 271
Cfr10I RCCGGY 1 cut(s) 395
Cfr13I GGNCC 3 cut(s) 622, 845, 846
Csp6I GTAC 3 cut(s) 598, 787, 937
CviAII CATG 8 cut(s) 75, 226, 428, 644, 769, 967, 1172, 1182
CviQI GTAC 3 cut(s) 598, 787, 937
DdeI CTNAG 4 cut(s) 470, 480, 516, 656
DinI GGCGCC 1 cut(s) 270
DpnI GATC 8 cut(s) 58, 666, 738, 752, 1062, 1091, 1097, 1152
DpnII GATC 8 cut(s) 56, 664, 736, 750, 1060, 1089, 1095, 1150
DrdI GACNNNNNNGTC 1 cut(s) 332
DseDI GACNNNNNNGTC 1 cut(s) 332
Eco130I CCWWGG 1 cut(s) 643
Eco24I GRGCYC 1 cut(s) 849
Eco31I GGTCTC 2 cut(s) 397, 674
Eco47I GGWCC 1 cut(s) 622
Eco88I CYCGRG 1 cut(s) 5
EcoNI CCTNNNNNAGG 1 cut(s) 629
EcoO109I RGGNCCY 2 cut(s) 845, 846
EcoRII CCWGG 1 cut(s) 1063
EcoT14I CCWWGG 1 cut(s) 643
EcoT38I GRGCYC 1 cut(s) 849
EgeI GGCGCC 1 cut(s) 270
EheI GGCGCC 1 cut(s) 270
ErhI CCWWGG 1 cut(s) 643
FaeI CATG 8 cut(s) 78, 229, 431, 647, 772, 970, 1175, 1185
FaqI GGGAC 3 cut(s) 315, 477, 680
FatI CATG 8 cut(s) 74, 225, 427, 643, 768, 966, 1171, 1181
FauI CCCGC 1 cut(s) 392
FauNDI CATATG 1 cut(s) 996
FbaI TGATCA 1 cut(s) 736
FblI GTMKAC 1 cut(s) 977
Fnu4HI GCNGC 5 cut(s) 120, 123, 173, 204, 1179
FokI GGATG 3 cut(s) 497, 563, 1149
FriOI GRGCYC 1 cut(s) 849
Fsp4HI GCNGC 5 cut(s) 120, 123, 173, 204, 1179
FspBI CTAG 2 cut(s) 48, 692
GlaI GCGC 1 cut(s) 270
GluI GCNGC 5 cut(s) 120, 123, 173, 204, 1179
GsuI CTGGAG 1 cut(s) 192
HaeII RGCGCY 1 cut(s) 272
HaeIII GGCC 3 cut(s) 79, 847, 879
HapII CCGG 4 cut(s) 161, 272, 396, 842
HhaI GCGC 1 cut(s) 271
Hin1I GRCGYC 1 cut(s) 269
Hin1II CATG 8 cut(s) 78, 229, 431, 647, 772, 970, 1175, 1185
Hin6I GCGC 1 cut(s) 269
HinP1I GCGC 1 cut(s) 269
HincII GTYRAC 2 cut(s) 391, 504
HindII GTYRAC 2 cut(s) 391, 504
HindIII AAGCTT 1 cut(s) 533
HpaI GTTAAC 1 cut(s) 391
HpaII CCGG 4 cut(s) 161, 272, 396, 842
HphI GGTGA 1 cut(s) 18
Hpy166II GTNNAC 3 cut(s) 391, 504, 978
Hpy188I TCNGA 3 cut(s) 241, 741, 1100
Hpy188III TCNNGA 7 cut(s) 179, 300, 428, 734, 769, 1093, 1154
Hpy8I GTNNAC 3 cut(s) 391, 504, 978
HpyAV CCTTC 5 cut(s) 39, 45, 454, 869, 1028
HpyCH4III ACNGT 2 cut(s) 425, 434
HpyCH4IV ACGT 2 cut(s) 347, 816
HpyCH4V TGCA 5 cut(s) 725, 796, 893, 1169, 1181
HpyF10VI GCNNNNNNNGC 4 cut(s) 209, 218, 266, 1175
HpyF3I CTNAG 4 cut(s) 470, 480, 516, 656
HpySE526I ACGT 2 cut(s) 347, 816
Hsp92I GRCGYC 1 cut(s) 269
Hsp92II CATG 8 cut(s) 78, 229, 431, 647, 772, 970, 1175, 1185
HspAI GCGC 1 cut(s) 269
KasI GGCGCC 1 cut(s) 268
KpnI GGTACC 1 cut(s) 940
Ksp22I TGATCA 1 cut(s) 736
KspAI GTTAAC 1 cut(s) 391
Kzo9I GATC 8 cut(s) 56, 664, 736, 750, 1060, 1089, 1095, 1150
LmnI GCTCC 2 cut(s) 211, 496
Lsp1109I GCAGC 3 cut(s) 134, 190, 1165
LweI GCATC 2 cut(s) 532, 574
MaeI CTAG 2 cut(s) 48, 692
MaeII ACGT 2 cut(s) 347, 816
MaeIII GTNAC 2 cut(s) 196, 343
MalI GATC 8 cut(s) 58, 666, 738, 752, 1062, 1091, 1097, 1152
MboI GATC 8 cut(s) 56, 664, 736, 750, 1060, 1089, 1095, 1150
MboII GAAGA 8 cut(s) 60, 66, 287, 607, 745, 786, 817, 999
MhlI GDGCHC 1 cut(s) 849
MluCI AATT 8 cut(s) 85, 527, 742, 930, 1006, 1027, 1102, 1122
Mly113I GGCGCC 1 cut(s) 269
MlyI GAGTC 8 cut(s) 17, 143, 204, 297, 351, 362, 365, 408
MmeI TCCRAC 2 cut(s) 219, 692
MnlI CCTC 7 cut(s) 146, 177, 475, 505, 511, 625, 713
MseI TTAA 4 cut(s) 263, 390, 605, 1026
MslI CAYNNNNRTG 1 cut(s) 426
MspA1I CMGCKG 2 cut(s) 203, 439
MspI CCGG 4 cut(s) 161, 272, 396, 842
MspR9I CCNGG 3 cut(s) 161, 843, 1065
MvaI CCWGG 1 cut(s) 1065
MvnI CGCG 1 cut(s) 449
MwoI GCNNNNNNNGC 4 cut(s) 209, 218, 266, 1175
NarI GGCGCC 1 cut(s) 269
NciI CCSGG 2 cut(s) 161, 843
NcoI CCATGG 1 cut(s) 643
NdeI CATATG 1 cut(s) 996
NdeII GATC 8 cut(s) 56, 664, 736, 750, 1060, 1089, 1095, 1150
NlaIII CATG 8 cut(s) 78, 229, 431, 647, 772, 970, 1175, 1185
NlaIV GGNNCC 8 cut(s) 111, 165, 270, 846, 847, 848, 938, 1041
NmuCI GTSAC 2 cut(s) 196, 343
NspI RCATGY 2 cut(s) 229, 1175
NspV TTCGAA 2 cut(s) 293, 949
PagI TCATGA 2 cut(s) 427, 768
PciI ACATGT 1 cut(s) 1171
PcsI WCGNNNNNNNCGW 1 cut(s) 153
PfeI GAWTC 3 cut(s) 290, 914, 922
PkrI GCNGC 5 cut(s) 121, 124, 174, 205, 1180
PleI GAGTC 8 cut(s) 16, 143, 203, 297, 350, 362, 364, 408
PluTI GGCGCC 1 cut(s) 272
PpsI GAGTC 8 cut(s) 16, 143, 203, 297, 350, 362, 364, 408
PscI ACATGT 1 cut(s) 1171
Psp6I CCWGG 1 cut(s) 1063
PspGI CCWGG 1 cut(s) 1063
PspN4I GGNNCC 8 cut(s) 111, 165, 270, 846, 847, 848, 938, 1041
PspOMI GGGCCC 1 cut(s) 845
PspPI GGNCC 3 cut(s) 622, 845, 846
PstNI CAGNNNCTG 1 cut(s) 545
PvuII CAGCTG 2 cut(s) 203, 439
RsaI GTAC 3 cut(s) 599, 788, 938
RsaNI GTAC 3 cut(s) 598, 787, 937
RseI CAYNNNNRTG 1 cut(s) 426
SaqAI TTAA 4 cut(s) 263, 390, 605, 1026
SatI GCNGC 5 cut(s) 120, 123, 173, 204, 1179
Sau3AI GATC 8 cut(s) 56, 664, 736, 750, 1060, 1089, 1095, 1150
Sau96I GGNCC 3 cut(s) 622, 845, 846
ScaI AGTACT 1 cut(s) 788
SchI GAGTC 8 cut(s) 17, 143, 204, 297, 351, 362, 365, 408
ScrFI CCNGG 3 cut(s) 161, 843, 1065
SduI GDGCHC 1 cut(s) 849
SfaNI GCATC 2 cut(s) 532, 574
SfoI GGCGCC 1 cut(s) 270
SfuI TTCGAA 2 cut(s) 293, 949
SgrAI CRCCGGYG 1 cut(s) 395
SinI GGWCC 1 cut(s) 622
SmiMI CAYNNNNRTG 1 cut(s) 426
SmlI CTYRAG 1 cut(s) 42
SmoI CTYRAG 1 cut(s) 42
Sse9I AATT 8 cut(s) 85, 527, 742, 930, 1006, 1027, 1102, 1122
SsiI CCGC 7 cut(s) 119, 173, 323, 399, 449, 1116, 1144
SspDI GGCGCC 1 cut(s) 268
SspI AATATT 1 cut(s) 859
SspMI CTAG 2 cut(s) 48, 692
StyD4I CCNGG 3 cut(s) 159, 841, 1063
StyI CCWWGG 1 cut(s) 643
TaaI ACNGT 2 cut(s) 425, 434
TaiI ACGT 2 cut(s) 350, 819
TaqI TCGA 6 cut(s) 147, 156, 293, 862, 949, 1149
TasI AATT 8 cut(s) 85, 527, 742, 930, 1006, 1027, 1102, 1122
TatI WGTACW 2 cut(s) 597, 786
TauI GCSGC 2 cut(s) 122, 175
TfiI GAWTC 3 cut(s) 290, 914, 922
Tru1I TTAA 4 cut(s) 263, 390, 605, 1026
Tru9I TTAA 4 cut(s) 263, 390, 605, 1026
TseFI GTSAC 2 cut(s) 196, 343
TseI GCWGC 3 cut(s) 122, 203, 1178
Tsp45I GTSAC 2 cut(s) 196, 343
TspDTI ATGAA 3 cut(s) 60, 689, 817
VpaK11BI GGWCC 1 cut(s) 622
XagI CCTNNNNNAGG 1 cut(s) 629
XapI RAATTY 4 cut(s) 85, 527, 742, 1006
XceI RCATGY 2 cut(s) 229, 1175
XmiI GTMKAC 1 cut(s) 977
XspI CTAG 2 cut(s) 48, 692
ZrmI AGTACT 1 cut(s) 788
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.