Basic Information

Type: gene

Biological Identity

Species

rosa_multiflora

Chromosome

Rmu_co8425041.1

Orthogroup ID

OG0000797

Physical Location & Seq

Genomic Coordinates Reverse (-)

124 .. 966

Gene Structure 843 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rmu_co8425041.1_g000001.1.cds

Sequence Viewer

CDS Protein Promoter (2k)

Length: 618 bp

atgatttacttcacagatgcttcatataaaaacagtgtagaagacttcatctgggagtttctagagggcagaccccatggtaggttactgagctacaatccatcgaccaaagagaccaaagtgcttgtccgcgatctctactttgctaatggagtagcaatctctccggatcagaattatgtgatcttctgtgaaactttcatgaaaagatgtaggaagtaccacctgcaaggcgagaagaaagggagcatagagaacttcattgacaacttaccgggcttcccggataatatccgatatgatggggaaggccattactggattgcaatacctacggggacttcagctattttgaataaagcacttgggtaccgttttatccgaaaagggatggcaatcatggagaagtatatagtgagcagaccatataaggagaagaattctggtgtaatggctgtgaatttggaaggggaacctactgcccactattctgatccagatttatcactcattacaagtgggatcaagatcggaaactacctctattgcggttcggttctctatccatacatcatccgccttgatctagaacaacatcctgcacataccactctatga

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003824 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005783 GO:0012505 GO:0016020 GO:0016787 GO:0016788 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044424 GO:0044444 GO:0044464

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

Str_synth

Protein Analysis

205

Amino Acids

23.5

Weight (kDa)

7.01

Isoelectric Point (pI)

27.08

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0000797)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT3G51420 AT3G51430 AT3G51430 AT3G51440 AT3G51450
fragaria_vesca	FvH4_1g10570 FvH4_1g10571 FvH4_1g10572
malus_domestica	MD02G1119800.v1.1 MD02G1119900.v1.1
prunus_persica	Prupe.7G178800_v2.0.a1 Prupe.7G179100_v2.0.a1
pyrus_communis	pycom02g09330 pycom02g09340 pycom02g09350 pycom15g20840
rosa_chinensis	RchiOBHm_Chr2g0097641 RchiOBHm_Chr2g0173351 RchiOBHm_Chr3g0449291 RchiOBHm_Chr3g0492501 RchiOBHm_Chr3g0492521 RchiOBHm_Chr3g0492531
rosa_laevigata	RLG00000016730 RLG00000016731 RLG00000022762 RLG00000025842
rosa_multiflora	Rmu_co8425041.1_g000001 Rmu_sc0000971.1_g000010 Rmu_sc0000971.1_g000016 Rmu_sc0004874.1_g000001 Rmu_sc0010088.1_g000002 Rmu_sc0010088.1_g000009 Rmu_sc0016955.1_g000001 Rmu_sc0020190.1_g000005 Rmu_sc0026896.1_g000001 Rmu_ssc0000282.1_g000007
rosa_roxburghii	Rroxscaffold_2G00144630 Rroxscaffold_2G00144640 Rroxscaffold_6G00392230 Rroxscaffold_6G00427290
rosa_rugosa	Rorug02G0068000 Rorug02G0068100 Rorug02G0619400 Rorug02G0619400 Rorug03G0254300
rosa_samantha	Rh2AG114400 Rh2AG114500 Rh2AG647900 Rh2BG117100 Rh2BG117300 Rh2BG658400 Rh2CG119100 Rh2CG119300 Rh2DG118100 Rh2DG673800 Rh3AG017400 Rh3AG304700 Rh3BG017500 Rh3BG340600 Rh3CG016500 Rh3CG338000 Rh3CG338100 Rh3DG017800 Rh3DG339800
rosa_wichuraiana	Rw2G008940 Rw2G008960 Rw2G053190 Rw3G001330 Rw3G026840

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AarI	CACCTGC	1 cut(s)	234
Acc36I	ACCTGC	1 cut(s)	234
Acc65I	GGTACC	1 cut(s)	369
AccB1I	GGYRCC	1 cut(s)	369
AccII	CGCG	1 cut(s)	132
AccIII	TCCGGA	1 cut(s)	166
AciI	CCGC	3 cut(s)	130, 549, 577
AclWI	GGATC	3 cut(s)	177, 488, 530
AcsI	RAATTY	2 cut(s)	439, 460
AcuI	CTGAAG	1 cut(s)	327
AfaI	GTAC	2 cut(s)	221, 371
AfiI	CCNNNNNNNGG	1 cut(s)	81
AgsI	TTSAA	1 cut(s)	355
AluBI	AGCT	2 cut(s)	93, 347
AluI	AGCT	2 cut(s)	93, 347
Alw26I	GTCTC	1 cut(s)	107
AlwI	GGATC	3 cut(s)	177, 488, 530
Aor13HI	TCCGGA	1 cut(s)	166
AoxI	GGCC	1 cut(s)	310
ApoI	RAATTY	2 cut(s)	439, 460
ArsI	GACNNNNNNTTYG	2 cut(s)	111, 143
Asp718I	GGTACC	1 cut(s)	369
AsuC2I	CCSGG	2 cut(s)	276, 284
BaeI	ACNNNNGTAYC	2 cut(s)	353, 386
BanI	GGYRCC	1 cut(s)	369
BbsI	GAAGAC	1 cut(s)	48
BccI	CCATC	3 cut(s)	109, 296, 385
BcnI	CCSGG	2 cut(s)	276, 284
BcoDI	GTCTC	1 cut(s)	107
BfaI	CTAG	2 cut(s)	62, 587
BfuAI	ACCTGC	1 cut(s)	234
Bme1390I	CCNGG	2 cut(s)	276, 284
BmiI	GGNNCC	2 cut(s)	371, 474
BmrFI	CCNGG	2 cut(s)	276, 284
BmsI	GCATC	1 cut(s)	7
BpiI	GAAGAC	1 cut(s)	48
BpuMI	CCSGG	2 cut(s)	276, 284
BsaBI	GATNNNNATC	2 cut(s)	395, 527
BsaI	GGTCTC	1 cut(s)	107
BsaJI	CCNNGG	1 cut(s)	76
BsaWI	WCCGGW	1 cut(s)	166
Bsc4I	CCNNNNNNNGG	1 cut(s)	81
Bse1I	ACTGG	1 cut(s)	323
Bse8I	GATNNNNATC	2 cut(s)	395, 527
BseAI	TCCGGA	1 cut(s)	166
BseDI	CCNNGG	1 cut(s)	76
BseGI	GGATG	3 cut(s)	396, 573, 595
BseJI	GATNNNNATC	2 cut(s)	395, 527
BseLI	CCNNNNNNNGG	1 cut(s)	81
BseMII	CTCAG	1 cut(s)	80
BseNI	ACTGG	1 cut(s)	323
BsgI	GTGCAG	1 cut(s)	585
Bsh1236I	CGCG	1 cut(s)	132
BshFI	GGCC	1 cut(s)	312
BshNI	GGYRCC	1 cut(s)	369
BsiSI	CCGG	3 cut(s)	167, 275, 284
BslFI	GGGAC	1 cut(s)	352
BslI	CCNNNNNNNGG	1 cut(s)	81
BsmAI	GTCTC	1 cut(s)	107
BsmFI	GGGAC	1 cut(s)	352
BsnI	GGCC	1 cut(s)	312
Bso31I	GGTCTC	1 cut(s)	107
Bsp13I	TCCGGA	1 cut(s)	166
Bsp143I	GATC	7 cut(s)	133, 169, 183, 493, 522, 528, 583
Bsp19I	CCATGG	1 cut(s)	76
BspACI	CCGC	3 cut(s)	130, 549, 577
BspANI	GGCC	1 cut(s)	312
BspCNI	CTCAG	1 cut(s)	81
BspEI	TCCGGA	1 cut(s)	166
BspFNI	CGCG	1 cut(s)	132
BspHI	TCATGA	1 cut(s)	201
BspLI	GGNNCC	2 cut(s)	371, 474
BspMI	ACCTGC	1 cut(s)	234
BspPI	GGATC	3 cut(s)	177, 488, 530
BspT107I	GGYRCC	1 cut(s)	369
BspTNI	GGTCTC	1 cut(s)	107
BsrI	ACTGG	1 cut(s)	323
BssECI	CCNNGG	1 cut(s)	76
BssMI	GATC	7 cut(s)	133, 169, 183, 493, 522, 528, 583
BssT1I	CCWWGG	1 cut(s)	76
Bst4CI	ACNGT	2 cut(s)	35, 374
BstDEI	CTNAG	1 cut(s)	89
BstDSI	CCRYGG	1 cut(s)	76
BstF5I	GGATG	3 cut(s)	396, 573, 595
BstFNI	CGCG	1 cut(s)	132
BstKTI	GATC	7 cut(s)	136, 172, 186, 496, 525, 531, 586
BstMAI	GTCTC	1 cut(s)	107
BstMBI	GATC	7 cut(s)	133, 169, 183, 493, 522, 528, 583
BstSCI	CCNGG	2 cut(s)	274, 282
BstUI	CGCG	1 cut(s)	132
BstV2I	GAAGAC	1 cut(s)	48
BsuRI	GGCC	1 cut(s)	312
BtgI	CCRYGG	1 cut(s)	76
BtsCI	GGATG	3 cut(s)	396, 573, 595
BtsIMutI	CAGTG	1 cut(s)	40
BveI	ACCTGC	1 cut(s)	234
CciI	TCATGA	1 cut(s)	201
Csp6I	GTAC	2 cut(s)	220, 370
CviAII	CATG	3 cut(s)	77, 202, 400
CviJI	RGCY	5 cut(s)	93, 279, 312, 347, 455
CviKI_1	RGCY	5 cut(s)	93, 279, 312, 347, 455
CviQI	GTAC	2 cut(s)	220, 370
DdeI	CTNAG	1 cut(s)	89
DpnI	GATC	7 cut(s)	135, 171, 185, 495, 524, 530, 585
DpnII	GATC	7 cut(s)	133, 169, 183, 493, 522, 528, 583
EciI	GGCGGA	1 cut(s)	566
Eco130I	CCWWGG	1 cut(s)	76
Eco31I	GGTCTC	1 cut(s)	107
Eco57I	CTGAAG	1 cut(s)	327
EcoRI	GAATTC	1 cut(s)	439
EcoT14I	CCWWGG	1 cut(s)	76
ErhI	CCWWGG	1 cut(s)	76
FaeI	CATG	3 cut(s)	80, 205, 403
FaqI	GGGAC	1 cut(s)	352
FatI	CATG	3 cut(s)	76, 201, 399
FokI	GGATG	3 cut(s)	403, 560, 582
FspBI	CTAG	2 cut(s)	62, 587
HaeIII	GGCC	1 cut(s)	312
HapII	CCGG	3 cut(s)	167, 275, 284
Hin1II	CATG	3 cut(s)	80, 205, 403
HpaII	CCGG	3 cut(s)	167, 275, 284
Hpy188I	TCNGA	5 cut(s)	174, 296, 383, 493, 533
Hpy188III	TCNNGA	6 cut(s)	62, 167, 202, 497, 526, 587
HpyAV	CCTTC	2 cut(s)	302, 461
HpyCH4III	ACNGT	2 cut(s)	35, 374
HpyCH4V	TGCA	3 cut(s)	229, 326, 602
HpyF3I	CTNAG	1 cut(s)	89
Hsp92II	CATG	3 cut(s)	80, 205, 403
Kpn2I	TCCGGA	1 cut(s)	166
KpnI	GGTACC	1 cut(s)	373
Kzo9I	GATC	7 cut(s)	133, 169, 183, 493, 522, 528, 583
LmnI	GCTCC	1 cut(s)	246
LpnPI	CCDG	9 cut(s)	37, 180, 239, 288, 297, 304, 429, 510, 612
LweI	GCATC	1 cut(s)	7
MaeI	CTAG	2 cut(s)	62, 587
MaeIII	GTNAC	1 cut(s)	84
MalI	GATC	7 cut(s)	135, 171, 185, 495, 524, 530, 585
MboI	GATC	7 cut(s)	133, 169, 183, 493, 522, 528, 583
MboII	GAAGA	4 cut(s)	53, 178, 250, 448
MluCI	AATT	3 cut(s)	175, 439, 460
MnlI	CCTC	2 cut(s)	58, 551
MroI	TCCGGA	1 cut(s)	166
MspI	CCGG	3 cut(s)	167, 275, 284
MspR9I	CCNGG	2 cut(s)	276, 284
MvnI	CGCG	1 cut(s)	132
NciI	CCSGG	2 cut(s)	276, 284
NcoI	CCATGG	1 cut(s)	76
NdeII	GATC	7 cut(s)	133, 169, 183, 493, 522, 528, 583
NlaIII	CATG	3 cut(s)	80, 205, 403
NlaIV	GGNNCC	2 cut(s)	371, 474
PagI	TCATGA	1 cut(s)	201
PaqCI	CACCTGC	1 cut(s)	234
PfoI	TCCNGGA	1 cut(s)	282
PspN4I	GGNNCC	2 cut(s)	371, 474
RsaI	GTAC	2 cut(s)	221, 371
RsaNI	GTAC	2 cut(s)	220, 370
Sau3AI	GATC	7 cut(s)	133, 169, 183, 493, 522, 528, 583
ScrFI	CCNGG	2 cut(s)	276, 284
SetI	ASST	7 cut(s)	86, 95, 228, 334, 349, 478, 543
SfaNI	GCATC	1 cut(s)	7
Sse9I	AATT	3 cut(s)	175, 439, 460
SsiI	CCGC	3 cut(s)	130, 549, 577
SspMI	CTAG	2 cut(s)	62, 587
StyD4I	CCNGG	2 cut(s)	274, 282
StyI	CCWWGG	1 cut(s)	76
TaaI	ACNGT	2 cut(s)	35, 374
TaqI	TCGA	1 cut(s)	104
TasI	AATT	3 cut(s)	175, 439, 460
TscAI	CASTG	1 cut(s)	40
TspDTI	ATGAA	5 cut(s)	12, 37, 190, 218, 250
TspRI	CASTG	1 cut(s)	40
XapI	RAATTY	2 cut(s)	439, 460
XbaI	TCTAGA	2 cut(s)	61, 586
XspI	CTAG	2 cut(s)	62, 587

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.