Rmu_sc0000971.1_g000016

Adipocyte plasma membrane-associated

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_multiflora
Rmu_sc0000971.1
OG0000797
Physical Location & Seq
Forward (+)
47372 .. 49637
2266 bp
Loading structure...
UTR
Exon/CDS
Intron
Rmu_sc0000971.1_g000016.1.cds

Sequence Viewer

Length: 1104 bp
atggttgctagaggtcgccggaaaagttggccggagctgacgtggcaccggctgctgacgcggcaggacggcctgtttctttcttctgggccgagctatcttcttttgctactgggtcgtgctaatctccttctggttctgggccaaactgcttctgtttcttctgggctgggctgcacagggcttaaggcagtggctggaaaagcaggcggcggttcaaaggaggaggagggaaaggctttgaaccgggcaggggaacttctatcacttctggaggctagttcggtgcttttccggcctgttctgggtgtggcacgccagttctggactcctggagttgagagcttcaaggtgggaggcggtggtgtttggtatttgaagggattactgagaatagctgaggatggagcagtggagctgctgacggatgaggctgagggtgtaaaattcaagctaacagattgtgtagatgtagcgaaagatggtatgatttacttcacagatgcttcatataaaaacagcttacaagacttcatctgggactttctagagggcagaccccatggtaggttactaagctacaatccgtttaccaaagagaccaaagtgctcattcgcaacctctactttgctaatggagtagcactctctccggatcagaattatgtgatcttctgcgaaactttcatgaaaagatgtagaaagtattacctacaaggcgagaagaaagggagcatagagaacttcattaacaacttgccaggctctccggataatatacgatatgatggggaaggccattactggatcgcaatacctatggggacttcagtttttttggatctagcacttaggtacccttttatccgaaaagggctggcaatcgtggagaagtatatagtgagcagaccatataaggagaagaattctggtgtacttgctgtgaacttggaaggggaacctactgcccattattttgatccagatttgtcactcattacaagtgggatcaagatcggaaactacctctactgtggctccgttctcaatccatacattatccgcctagatctggaacaacatcctgcacatgccactacatga
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
GO:0003674 GO:0003824 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005783 GO:0012505 GO:0016020 GO:0016787 GO:0016788 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044424 GO:0044444 GO:0044464
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
Str_synth

Protein Analysis

367

Amino Acids

40.69

Weight (kDa)

8.61

Isoelectric Point (pI)

29.22

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
Acc65I GGTACC 1 cut(s) 855
AccB1I GGYRCC 2 cut(s) 45, 855
AccII CGCG 1 cut(s) 61
AccIII TCCGGA 2 cut(s) 652, 769
AciI CCGC 5 cut(s) 61, 210, 213, 360, 1063
AclWI GGATC 5 cut(s) 663, 815, 849, 974, 1016
AcoI YGGCCR 1 cut(s) 29
AcsI RAATTY 2 cut(s) 446, 925
AcuI CTGAAG 1 cut(s) 813
AfaI GTAC 2 cut(s) 857, 936
AfiI CCNNNNNNNGG 4 cut(s) 253, 305, 567, 1072
AflII CTTAAG 1 cut(s) 185
AgsI TTSAA 5 cut(s) 219, 244, 349, 379, 451
AjiI CACGTC 1 cut(s) 42
AjnI CCWGG 2 cut(s) 331, 760
AluBI AGCT 8 cut(s) 37, 96, 345, 398, 418, 454, 522, 579
AluI AGCT 8 cut(s) 37, 96, 345, 398, 418, 454, 522, 579
Alw21I GWGCWC 1 cut(s) 612
Alw26I GTCTC 1 cut(s) 593
AlwI GGATC 5 cut(s) 663, 815, 849, 974, 1016
AlwNI CAGNNNCTG 1 cut(s) 197
Aor13HI TCCGGA 2 cut(s) 652, 769
AoxI GGCC 6 cut(s) 29, 70, 89, 142, 296, 796
ApeKI GCWGC 3 cut(s) 52, 174, 418
ApoI RAATTY 2 cut(s) 446, 925
Asp718I GGTACC 1 cut(s) 855
AspS9I GGNCC 2 cut(s) 89, 142
AsuC2I CCSGG 1 cut(s) 248
BaeI ACNNNNGTAYC 2 cut(s) 839, 872
BanI GGYRCC 2 cut(s) 45, 855
Bbv12I GWGCWC 1 cut(s) 612
BbvCI CCTCAGC 2 cut(s) 399, 435
BbvI GCAGC 3 cut(s) 39, 161, 405
BccI CCATC 3 cut(s) 398, 476, 782
BceAI ACGGC 1 cut(s) 85
BciT130I CCWGG 2 cut(s) 333, 762
BcnI CCSGG 1 cut(s) 248
BcoDI GTCTC 1 cut(s) 593
BfaI CTAG 5 cut(s) 9, 279, 548, 845, 1067
BfrI CTTAAG 1 cut(s) 185
BglII AGATCT 1 cut(s) 1069
BisI GCNGC 5 cut(s) 53, 62, 175, 211, 419
BlsI GCNGC 5 cut(s) 54, 63, 176, 212, 420
Bme1390I CCNGG 3 cut(s) 248, 333, 762
BmgBI CACGTC 1 cut(s) 42
BmgT120I GGNCC 2 cut(s) 89, 142
BmiI GGNNCC 4 cut(s) 47, 857, 960, 1039
BmrFI CCNGG 3 cut(s) 248, 333, 762
BmrI ACTGGG 1 cut(s) 122
BmsI GCATC 1 cut(s) 493
BmuI ACTGGG 1 cut(s) 122
BplI GAGNNNNNCTC 2 cut(s) 630, 662
BpmI CTGGAG 2 cut(s) 293, 354
Bpu10I CCTNAGC 2 cut(s) 399, 435
BpuMI CCSGG 1 cut(s) 248
BsaBI GATNNNNATC 1 cut(s) 1013
BsaI GGTCTC 1 cut(s) 593
BsaJI CCNNGG 1 cut(s) 562
BsaWI WCCGGW 2 cut(s) 652, 769
BsaXI ACNNNNNCTCC 4 cut(s) 26, 56, 1022, 1052
Bsc4I CCNNNNNNNGG 4 cut(s) 253, 305, 567, 1072
Bse118I RCCGGY 1 cut(s) 48
Bse1I ACTGG 3 cut(s) 117, 319, 809
Bse8I GATNNNNATC 1 cut(s) 1013
BseAI TCCGGA 2 cut(s) 652, 769
BseBI CCWGG 2 cut(s) 333, 762
BseDI CCNNGG 1 cut(s) 562
BseGI GGATG 3 cut(s) 409, 433, 1081
BseJI GATNNNNATC 1 cut(s) 1013
BseLI CCNNNNNNNGG 4 cut(s) 253, 305, 567, 1072
BseMII CTCAG 3 cut(s) 380, 390, 426
BseNI ACTGG 3 cut(s) 117, 319, 809
BseRI GAGGAG 2 cut(s) 239, 242
BseXI GCAGC 3 cut(s) 39, 161, 405
BseYI CCCAGC 1 cut(s) 169
BsgI GTGCAG 2 cut(s) 160, 1071
Bsh1236I CGCG 1 cut(s) 61
BshFI GGCC 6 cut(s) 31, 72, 91, 144, 298, 798
BshNI GGYRCC 2 cut(s) 45, 855
BsiHKAI GWGCWC 1 cut(s) 612
BsiSI CCGG 7 cut(s) 19, 32, 49, 247, 295, 653, 770
BslFI GGGAC 2 cut(s) 554, 838
BslI CCNNNNNNNGG 4 cut(s) 253, 305, 567, 1072
BsmAI GTCTC 1 cut(s) 593
BsmFI GGGAC 2 cut(s) 554, 838
BsnI GGCC 6 cut(s) 31, 72, 91, 144, 298, 798
Bso31I GGTCTC 1 cut(s) 593
Bsp1286I GDGCHC 1 cut(s) 612
Bsp13I TCCGGA 2 cut(s) 652, 769
Bsp143I GATC 8 cut(s) 655, 669, 807, 841, 979, 1008, 1014, 1069
Bsp19I CCATGG 1 cut(s) 562
BspACI CCGC 5 cut(s) 61, 210, 213, 360, 1063
BspANI GGCC 6 cut(s) 31, 72, 91, 144, 298, 798
BspCNI CTCAG 3 cut(s) 381, 391, 427
BspEI TCCGGA 2 cut(s) 652, 769
BspFNI CGCG 1 cut(s) 61
BspHI TCATGA 1 cut(s) 687
BspLI GGNNCC 4 cut(s) 47, 857, 960, 1039
BspPI GGATC 5 cut(s) 663, 815, 849, 974, 1016
BspT107I GGYRCC 2 cut(s) 45, 855
BspTI CTTAAG 1 cut(s) 185
BspTNI GGTCTC 1 cut(s) 593
BsrFI RCCGGY 1 cut(s) 48
BsrI ACTGG 3 cut(s) 117, 319, 809
BssAI RCCGGY 1 cut(s) 48
BssECI CCNNGG 1 cut(s) 562
BssMI GATC 8 cut(s) 655, 669, 807, 841, 979, 1008, 1014, 1069
BssT1I CCWWGG 1 cut(s) 562
Bst2UI CCWGG 2 cut(s) 333, 762
Bst4CI ACNGT 1 cut(s) 1034
BstAFI CTTAAG 1 cut(s) 185
BstAPI GCANNNNNTGC 1 cut(s) 52
BstC8I GCNNGC 3 cut(s) 208, 316, 879
BstDEI CTNAG 5 cut(s) 389, 399, 435, 575, 851
BstDSI CCRYGG 1 cut(s) 562
BstF5I GGATG 3 cut(s) 409, 433, 1081
BstFNI CGCG 1 cut(s) 61
BstKTI GATC 8 cut(s) 658, 672, 810, 844, 982, 1011, 1017, 1072
BstMAI GTCTC 1 cut(s) 593
BstMBI GATC 8 cut(s) 655, 669, 807, 841, 979, 1008, 1014, 1069
BstMWI GCNNNNNNNGC 6 cut(s) 43, 52, 58, 61, 203, 295
BstNI CCWGG 2 cut(s) 333, 762
BstNSI RCATGY 1 cut(s) 1094
BstSCI CCNGG 3 cut(s) 246, 331, 760
BstUI CGCG 1 cut(s) 61
BstV1I GCAGC 3 cut(s) 39, 161, 405
BstX2I RGATCY 2 cut(s) 841, 1069
BstYI RGATCY 2 cut(s) 841, 1069
BsuRI GGCC 6 cut(s) 31, 72, 91, 144, 298, 798
BtgI CCRYGG 1 cut(s) 562
BtrI CACGTC 1 cut(s) 42
BtsCI GGATG 3 cut(s) 409, 433, 1081
BtsI GCAGTG 2 cut(s) 198, 417
BtsIMutI CAGTG 2 cut(s) 198, 417
Cac8I GCNNGC 3 cut(s) 208, 316, 879
CaiI CAGNNNCTG 1 cut(s) 197
CciI TCATGA 1 cut(s) 687
Cfr10I RCCGGY 1 cut(s) 48
Cfr13I GGNCC 2 cut(s) 89, 142
CseI GACGC 1 cut(s) 67
Csp6I GTAC 2 cut(s) 856, 935
CviAII CATG 4 cut(s) 563, 688, 1091, 1101
CviQI GTAC 2 cut(s) 856, 935
DdeI CTNAG 5 cut(s) 389, 399, 435, 575, 851
DpnI GATC 8 cut(s) 657, 671, 809, 843, 981, 1010, 1016, 1071
DpnII GATC 8 cut(s) 655, 669, 807, 841, 979, 1008, 1014, 1069
EaeI YGGCCR 1 cut(s) 29
EciI GGCGGA 1 cut(s) 1052
Eco130I CCWWGG 1 cut(s) 562
Eco31I GGTCTC 1 cut(s) 593
Eco57I CTGAAG 1 cut(s) 813
EcoRI GAATTC 1 cut(s) 925
EcoRII CCWGG 2 cut(s) 331, 760
EcoT14I CCWWGG 1 cut(s) 562
ErhI CCWWGG 1 cut(s) 562
FaeI CATG 4 cut(s) 566, 691, 1094, 1104
FaqI GGGAC 2 cut(s) 554, 838
FatI CATG 4 cut(s) 562, 687, 1090, 1100
Fnu4HI GCNGC 5 cut(s) 53, 62, 175, 211, 419
FokI GGATG 3 cut(s) 416, 440, 1068
Fsp4HI GCNGC 5 cut(s) 53, 62, 175, 211, 419
FspBI CTAG 5 cut(s) 9, 279, 548, 845, 1067
GluI GCNGC 5 cut(s) 53, 62, 175, 211, 419
GsaI CCCAGC 1 cut(s) 173
GsuI CTGGAG 2 cut(s) 293, 354
HaeIII GGCC 6 cut(s) 31, 72, 91, 144, 298, 798
HapII CCGG 7 cut(s) 19, 32, 49, 247, 295, 653, 770
HgaI GACGC 1 cut(s) 67
Hin1II CATG 4 cut(s) 566, 691, 1094, 1104
HinfI GANTC 1 cut(s) 328
HpaII CCGG 7 cut(s) 19, 32, 49, 247, 295, 653, 770
Hpy166II GTNNAC 3 cut(s) 591, 935, 946
Hpy188I TCNGA 3 cut(s) 660, 869, 1019
Hpy188III TCNNGA 9 cut(s) 272, 325, 548, 653, 688, 770, 983, 1012, 1073
Hpy8I GTNNAC 3 cut(s) 591, 935, 946
HpyAV CCTTC 4 cut(s) 140, 373, 788, 947
HpyCH4III ACNGT 1 cut(s) 1034
HpyCH4IV ACGT 1 cut(s) 41
HpyCH4V TGCA 2 cut(s) 177, 1088
HpyF10VI GCNNNNNNNGC 6 cut(s) 43, 52, 58, 61, 203, 295
HpyF3I CTNAG 5 cut(s) 389, 399, 435, 575, 851
HpySE526I ACGT 1 cut(s) 41
Hsp92II CATG 4 cut(s) 566, 691, 1094, 1104
Kpn2I TCCGGA 2 cut(s) 652, 769
KpnI GGTACC 1 cut(s) 859
Kzo9I GATC 8 cut(s) 655, 669, 807, 841, 979, 1008, 1014, 1069
LmnI GCTCC 5 cut(s) 34, 407, 415, 732, 1043
Lsp1109I GCAGC 3 cut(s) 39, 161, 405
LweI GCATC 1 cut(s) 493
MaeI CTAG 5 cut(s) 9, 279, 548, 845, 1067
MaeII ACGT 1 cut(s) 41
MaeIII GTNAC 2 cut(s) 570, 990
MalI GATC 8 cut(s) 657, 671, 809, 843, 981, 1010, 1016, 1071
MboI GATC 8 cut(s) 655, 669, 807, 841, 979, 1008, 1014, 1069
MboII GAAGA 6 cut(s) 75, 92, 153, 664, 736, 934
MflI RGATCY 2 cut(s) 841, 1069
MhlI GDGCHC 1 cut(s) 612
MluCI AATT 3 cut(s) 446, 661, 925
MlyI GAGTC 1 cut(s) 322
MroI TCCGGA 2 cut(s) 652, 769
MseI TTAA 2 cut(s) 186, 750
MspCI CTTAAG 1 cut(s) 185
MspI CCGG 7 cut(s) 19, 32, 49, 247, 295, 653, 770
MspR9I CCNGG 3 cut(s) 248, 333, 762
MvaI CCWGG 2 cut(s) 333, 762
MvnI CGCG 1 cut(s) 61
MwoI GCNNNNNNNGC 6 cut(s) 43, 52, 58, 61, 203, 295
NciI CCSGG 1 cut(s) 248
NcoI CCATGG 1 cut(s) 562
NdeII GATC 8 cut(s) 655, 669, 807, 841, 979, 1008, 1014, 1069
NlaIII CATG 4 cut(s) 566, 691, 1094, 1104
NlaIV GGNNCC 4 cut(s) 47, 857, 960, 1039
NmeAIII GCCGAG 1 cut(s) 117
NmuCI GTSAC 1 cut(s) 990
NspI RCATGY 1 cut(s) 1094
PagI TCATGA 1 cut(s) 687
PfoI TCCNGGA 1 cut(s) 331
PkrI GCNGC 5 cut(s) 54, 63, 176, 212, 420
PleI GAGTC 1 cut(s) 322
PpsI GAGTC 1 cut(s) 322
Psp6I CCWGG 2 cut(s) 331, 760
PspFI CCCAGC 1 cut(s) 169
PspGI CCWGG 2 cut(s) 331, 760
PspN4I GGNNCC 4 cut(s) 47, 857, 960, 1039
PspPI GGNCC 2 cut(s) 89, 142
PstNI CAGNNNCTG 1 cut(s) 197
PsuI RGATCY 2 cut(s) 841, 1069
RsaI GTAC 2 cut(s) 857, 936
RsaNI GTAC 2 cut(s) 856, 935
SaqAI TTAA 2 cut(s) 186, 750
SatI GCNGC 5 cut(s) 53, 62, 175, 211, 419
Sau3AI GATC 8 cut(s) 655, 669, 807, 841, 979, 1008, 1014, 1069
Sau96I GGNCC 2 cut(s) 89, 142
SchI GAGTC 1 cut(s) 322
ScrFI CCNGG 3 cut(s) 248, 333, 762
SduI GDGCHC 1 cut(s) 612
SfaNI GCATC 1 cut(s) 493
SmlI CTYRAG 1 cut(s) 185
SmoI CTYRAG 1 cut(s) 185
Sse9I AATT 3 cut(s) 446, 661, 925
SsiI CCGC 5 cut(s) 61, 210, 213, 360, 1063
SspMI CTAG 5 cut(s) 9, 279, 548, 845, 1067
StyD4I CCNGG 3 cut(s) 246, 331, 760
StyI CCWWGG 1 cut(s) 562
TaaI ACNGT 1 cut(s) 1034
TaiI ACGT 1 cut(s) 44
TasI AATT 3 cut(s) 446, 661, 925
TatI WGTACW 1 cut(s) 934
TauI GCSGC 2 cut(s) 64, 213
Tru1I TTAA 2 cut(s) 186, 750
Tru9I TTAA 2 cut(s) 186, 750
TscAI CASTG 2 cut(s) 198, 417
TseFI GTSAC 1 cut(s) 990
TseI GCWGC 3 cut(s) 52, 174, 418
Tsp45I GTSAC 1 cut(s) 990
TspDTI ATGAA 5 cut(s) 498, 523, 676, 704, 736
TspGWI ACGGA 3 cut(s) 440, 576, 1030
TspRI CASTG 2 cut(s) 198, 417
Vha464I CTTAAG 1 cut(s) 185
XapI RAATTY 2 cut(s) 446, 925
XbaI TCTAGA 1 cut(s) 547
XceI RCATGY 1 cut(s) 1094
XspI CTAG 5 cut(s) 9, 279, 548, 845, 1067
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.