Rh2BG117300

Adipocyte plasma membrane-associated

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_samantha
Chr2B
OG0000797
Physical Location & Seq
Reverse (-)
9956108 .. 9958113
2006 bp
Loading structure...
UTR
Exon/CDS
Intron
Rh2BG117300.1

Sequence Viewer

Length: 1206 bp
ATGCCAGTCGCCTCCATAACTCGCCACCCAATGCCCAAGTCAAGCAACCAAGACTCGCCTTCCTCTGCAACTCAATCTACCAGAAGATCATCATCATCATGGCCCTTAAACATTCTCTTCTTCTCAATACTGCTTCCGGTGGCGGCTGCTGTGGTCCTCTACCAGCTTGACTCATTCGACCCGGCTCCTCTGCCGCTTCGCGAGTTGAGTGAGCAAGTCGCGGCTGCCCGGAGTCGTAATGCTTACATGCTCAAAGGATCGGAGTTTTTGGGTGTTGGGGCTTTAGTGGGGCCAGAAGACGTTGCTTATGATTCAAAGTCGGGACTCATTTACACGGGATGTGCGGACGGGTGGATCAAGCGAGTCAAGTTGAACGAGTCGGCTGCTGACTCGGTGGTGGAGAACTGGGTTAATACCGGCGGGAGACCATTCGGACTCGCACACGGTCATAAGGGAGAGCTGTTGGTGGCGGACGGGGAAAGGGGACTACTGAGAATAGACGAGGATAGAGCAGTGGAGCTGCTGACAGATGAGGCTGAGAGTGTAAAATTCAAGCTAACAAACTGTGTAGATGTAGCGAAAGATGGCATGATTTACTTCACAGATGCTTCATATAAAAACAGCGTAGAAGACTTCATCTGGGAGTTTCTAGAGGGCAGACCCCATGGTAGGTTGCTGAGCTACAATCCATCGACCAAAGAGACCAAAGTGCTTGTCGGCGATCTCTACTTTGCTAATGGAGTAGCAATCTCTCCTGATCAGAATTATGTGATCTTCTGTGAAACTTTCATGAAAAGATGTAGGAAGTACCACCTGCAAGGCGAGAAGAAAGGGAGCATAGAGAACTTCATTGACAACTTGCCGGGCTTCCCGGATAATATCCGATATGATGGGGAAGGCCATTACTGGATTGCAATACCTTCGGGGACTTCAGCTATTTTGAATAAAGCACTTGGGTACCGTTTTATCCGAAAAGGGATGGCAATCATGGAGAAGTACATAGTGAGCAGACCATATAAGGAGAAGAATTCTGGTGTAATGGCTGTGAATTTGGAAGGGGAACCTACTGCCCACTATTCTGATCCAGATTTATCACTCATTACAAGTGGGATCAAGATCGGAAACTACCTCTATTGCGGTTCGGTTCTCTATCCATACATCATCCGCCTTGATCTAGAACAACATCCTGCACATACCACTCTATGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
GO:0003674 GO:0003824 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005783 GO:0012505 GO:0016020 GO:0016787 GO:0016788 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044424 GO:0044444 GO:0044464
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
Str_synth

Protein Analysis

401

Amino Acids

44.46

Weight (kDa)

5.9

Isoelectric Point (pI)

40.98

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
SSL_N PF20067 84 - 122 7.2e-08 Strictosidine synthase-like, N-terminal
SGL PF08450 137 - 310 4.1e-15 SMP-30/Gluconolactonase/LRE-like region
Str_synth PF03088 188 - 274 2.1e-31 Strictosidine synthase
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AarI CACCTGC 1 cut(s) 822
Acc36I ACCTGC 1 cut(s) 822
Acc65I GGTACC 1 cut(s) 957
AccB1I GGYRCC 1 cut(s) 957
AccII CGCG 2 cut(s) 201, 221
AciI CCGC 8 cut(s) 143, 194, 221, 344, 420, 470, 1137, 1165
AclWI GGATC 4 cut(s) 265, 362, 1076, 1118
AcsI RAATTY 3 cut(s) 548, 1027, 1048
AcuI CTGAAG 1 cut(s) 915
AfaI GTAC 3 cut(s) 809, 959, 998
AfiI CCNNNNNNNGG 1 cut(s) 669
AgsI TTSAA 4 cut(s) 315, 373, 553, 943
AluBI AGCT 6 cut(s) 166, 460, 520, 556, 681, 935
AluI AGCT 6 cut(s) 166, 460, 520, 556, 681, 935
Alw26I GTCTC 2 cut(s) 418, 695
AlwI GGATC 4 cut(s) 265, 362, 1076, 1118
AoxI GGCC 3 cut(s) 101, 290, 898
ApeKI GCWGC 4 cut(s) 146, 224, 383, 520
ApoI RAATTY 3 cut(s) 548, 1027, 1048
ArsI GACNNNNNNTTYG 2 cut(s) 699, 731
Asp718I GGTACC 1 cut(s) 957
AspS9I GGNCC 3 cut(s) 102, 154, 290
AsuC2I CCSGG 4 cut(s) 182, 229, 864, 872
AvaII GGWCC 1 cut(s) 154
BaeI ACNNNNGTAYC 2 cut(s) 941, 974
BanI GGYRCC 1 cut(s) 957
BbsI GAAGAC 2 cut(s) 303, 636
BbvI GCAGC 4 cut(s) 133, 211, 370, 507
BccI CCATC 4 cut(s) 578, 697, 884, 973
BcgI CGANNNNNNTGC 4 cut(s) 365, 399, 903, 937
BclI TGATCA 1 cut(s) 757
BcnI CCSGG 4 cut(s) 182, 229, 864, 872
BcoDI GTCTC 2 cut(s) 418, 695
BfaI CTAG 2 cut(s) 650, 1175
BfuAI ACCTGC 1 cut(s) 822
BisI GCNGC 7 cut(s) 144, 147, 194, 222, 225, 384, 521
BlpI GCTNAGC 1 cut(s) 677
BlsI GCNGC 7 cut(s) 145, 148, 195, 223, 226, 385, 522
Bme1390I CCNGG 4 cut(s) 182, 229, 864, 872
Bme18I GGWCC 1 cut(s) 154
BmgT120I GGNCC 3 cut(s) 102, 154, 290
BmiI GGNNCC 4 cut(s) 186, 291, 959, 1062
BmrFI CCNGG 4 cut(s) 182, 229, 864, 872
BmrI ACTGGG 1 cut(s) 415
BmsI GCATC 1 cut(s) 595
BmuI ACTGGG 1 cut(s) 415
BpiI GAAGAC 2 cut(s) 303, 636
Bpu1102I GCTNAGC 1 cut(s) 677
BpuMI CCSGG 4 cut(s) 182, 229, 864, 872
BsaBI GATNNNNATC 3 cut(s) 91, 983, 1115
BsaI GGTCTC 2 cut(s) 418, 695
BsaJI CCNNGG 1 cut(s) 664
BsaWI WCCGGW 1 cut(s) 136
Bsc4I CCNNNNNNNGG 1 cut(s) 669
Bse118I RCCGGY 1 cut(s) 416
Bse1I ACTGG 3 cut(s) 5, 410, 911
Bse8I GATNNNNATC 3 cut(s) 91, 983, 1115
BseDI CCNNGG 1 cut(s) 664
BseGI GGATG 4 cut(s) 344, 984, 1161, 1183
BseJI GATNNNNATC 3 cut(s) 91, 983, 1115
BseLI CCNNNNNNNGG 1 cut(s) 669
BseMII CTCAG 3 cut(s) 482, 528, 668
BseNI ACTGG 3 cut(s) 5, 410, 911
BseRI GAGGAG 1 cut(s) 177
BseXI GCAGC 4 cut(s) 133, 211, 370, 507
BsgI GTGCAG 1 cut(s) 1173
Bsh1236I CGCG 2 cut(s) 201, 221
BshFI GGCC 3 cut(s) 103, 292, 900
BshNI GGYRCC 1 cut(s) 957
BsiSI CCGG 6 cut(s) 137, 182, 229, 417, 863, 872
BslFI GGGAC 3 cut(s) 336, 498, 940
BslI CCNNNNNNNGG 1 cut(s) 669
BsmAI GTCTC 2 cut(s) 418, 695
BsmFI GGGAC 3 cut(s) 336, 498, 940
BsnI GGCC 3 cut(s) 103, 292, 900
Bso31I GGTCTC 2 cut(s) 418, 695
Bsp1720I GCTNAGC 1 cut(s) 677
Bsp19I CCATGG 1 cut(s) 664
Bsp68I TCGCGA 1 cut(s) 201
BspACI CCGC 8 cut(s) 143, 194, 221, 344, 420, 470, 1137, 1165
BspANI GGCC 3 cut(s) 103, 292, 900
BspCNI CTCAG 3 cut(s) 483, 529, 669
BspFNI CGCG 2 cut(s) 201, 221
BspHI TCATGA 1 cut(s) 789
BspLI GGNNCC 4 cut(s) 186, 291, 959, 1062
BspMI ACCTGC 1 cut(s) 822
BspPI GGATC 4 cut(s) 265, 362, 1076, 1118
BspT107I GGYRCC 1 cut(s) 957
BspTNI GGTCTC 2 cut(s) 418, 695
BsrFI RCCGGY 1 cut(s) 416
BsrI ACTGG 3 cut(s) 5, 410, 911
BssAI RCCGGY 1 cut(s) 416
BssECI CCNNGG 1 cut(s) 664
BssT1I CCWWGG 1 cut(s) 664
Bst4CI ACNGT 3 cut(s) 446, 566, 962
Bst6I CTCTTC 1 cut(s) 122
BstDEI CTNAG 3 cut(s) 491, 537, 677
BstDSI CCRYGG 1 cut(s) 664
BstF5I GGATG 4 cut(s) 344, 984, 1161, 1183
BstFNI CGCG 2 cut(s) 201, 221
BstMAI GTCTC 2 cut(s) 418, 695
BstNSI RCATGY 1 cut(s) 250
BstSCI CCNGG 4 cut(s) 180, 227, 862, 870
BstUI CGCG 2 cut(s) 201, 221
BstV1I GCAGC 4 cut(s) 133, 211, 370, 507
BstV2I GAAGAC 2 cut(s) 303, 636
BsuRI GGCC 3 cut(s) 103, 292, 900
BtgI CCRYGG 1 cut(s) 664
BtsCI GGATG 4 cut(s) 344, 984, 1161, 1183
BtsI GCAGTG 1 cut(s) 519
BtsIMutI CAGTG 1 cut(s) 519
BtuMI TCGCGA 1 cut(s) 201
BveI ACCTGC 1 cut(s) 822
CciI TCATGA 1 cut(s) 789
Cfr10I RCCGGY 1 cut(s) 416
Cfr13I GGNCC 3 cut(s) 102, 154, 290
Csp6I GTAC 3 cut(s) 808, 958, 997
CviAII CATG 6 cut(s) 99, 247, 589, 665, 790, 988
CviQI GTAC 3 cut(s) 808, 958, 997
DdeI CTNAG 3 cut(s) 491, 537, 677
Eam1104I CTCTTC 1 cut(s) 122
EarI CTCTTC 1 cut(s) 122
EciI GGCGGA 2 cut(s) 485, 1154
Eco130I CCWWGG 1 cut(s) 664
Eco31I GGTCTC 2 cut(s) 418, 695
Eco47I GGWCC 1 cut(s) 154
Eco57I CTGAAG 1 cut(s) 915
EcoRI GAATTC 1 cut(s) 1027
EcoT14I CCWWGG 1 cut(s) 664
ErhI CCWWGG 1 cut(s) 664
FaeI CATG 6 cut(s) 102, 250, 592, 668, 793, 991
FaqI GGGAC 3 cut(s) 336, 498, 940
FatI CATG 6 cut(s) 98, 246, 588, 664, 789, 987
FauI CCCGC 1 cut(s) 413
FbaI TGATCA 1 cut(s) 757
Fnu4HI GCNGC 7 cut(s) 144, 147, 194, 222, 225, 384, 521
FokI GGATG 4 cut(s) 351, 991, 1148, 1170
Fsp4HI GCNGC 7 cut(s) 144, 147, 194, 222, 225, 384, 521
FspBI CTAG 2 cut(s) 650, 1175
GluI GCNGC 7 cut(s) 144, 147, 194, 222, 225, 384, 521
HaeIII GGCC 3 cut(s) 103, 292, 900
HapII CCGG 6 cut(s) 137, 182, 229, 417, 863, 872
Hin1II CATG 6 cut(s) 102, 250, 592, 668, 793, 991
HinfI GANTC 9 cut(s) 53, 170, 232, 311, 324, 363, 377, 389, 435
HpaII CCGG 6 cut(s) 137, 182, 229, 417, 863, 872
Hpy188I TCNGA 7 cut(s) 262, 434, 762, 884, 971, 1081, 1121
Hpy188III TCNNGA 8 cut(s) 200, 321, 650, 755, 790, 1085, 1114, 1175
HpyAV CCTTC 4 cut(s) 69, 890, 930, 1049
HpyCH4III ACNGT 3 cut(s) 446, 566, 962
HpyCH4IV ACGT 1 cut(s) 300
HpyCH4V TGCA 4 cut(s) 68, 817, 914, 1190
HpyF3I CTNAG 3 cut(s) 491, 537, 677
HpySE526I ACGT 1 cut(s) 300
Hsp92II CATG 6 cut(s) 102, 250, 592, 668, 793, 991
KpnI GGTACC 1 cut(s) 961
Ksp22I TGATCA 1 cut(s) 757
LmnI GCTCC 3 cut(s) 190, 517, 834
Lsp1109I GCAGC 4 cut(s) 133, 211, 370, 507
LweI GCATC 1 cut(s) 595
MaeI CTAG 2 cut(s) 650, 1175
MaeII ACGT 1 cut(s) 300
MboII GAAGA 8 cut(s) 96, 109, 112, 308, 641, 766, 838, 1036
MluCI AATT 4 cut(s) 548, 763, 1027, 1048
MlyI GAGTC 8 cut(s) 47, 164, 241, 318, 372, 383, 386, 429
MnlI CCTC 8 cut(s) 22, 73, 167, 198, 496, 526, 646, 1139
MseI TTAA 2 cut(s) 107, 411
MslI CAYNNNNRTG 1 cut(s) 97
MspI CCGG 6 cut(s) 137, 182, 229, 417, 863, 872
MspR9I CCNGG 4 cut(s) 182, 229, 864, 872
MvnI CGCG 2 cut(s) 201, 221
NciI CCSGG 4 cut(s) 182, 229, 864, 872
NcoI CCATGG 1 cut(s) 664
NlaIII CATG 6 cut(s) 102, 250, 592, 668, 793, 991
NlaIV GGNNCC 4 cut(s) 186, 291, 959, 1062
NruI TCGCGA 1 cut(s) 201
NspI RCATGY 1 cut(s) 250
PagI TCATGA 1 cut(s) 789
PaqCI CACCTGC 1 cut(s) 822
PfeI GAWTC 1 cut(s) 311
PfoI TCCNGGA 1 cut(s) 870
PkrI GCNGC 7 cut(s) 145, 148, 195, 223, 226, 385, 522
PleI GAGTC 8 cut(s) 47, 164, 240, 318, 371, 383, 385, 429
PpsI GAGTC 8 cut(s) 47, 164, 240, 318, 371, 383, 385, 429
PspN4I GGNNCC 4 cut(s) 186, 291, 959, 1062
PspPI GGNCC 3 cut(s) 102, 154, 290
RruI TCGCGA 1 cut(s) 201
RsaI GTAC 3 cut(s) 809, 959, 998
RsaNI GTAC 3 cut(s) 808, 958, 997
RseI CAYNNNNRTG 1 cut(s) 97
SaqAI TTAA 2 cut(s) 107, 411
SatI GCNGC 7 cut(s) 144, 147, 194, 222, 225, 384, 521
Sau96I GGNCC 3 cut(s) 102, 154, 290
SchI GAGTC 8 cut(s) 47, 164, 241, 318, 372, 383, 386, 429
ScrFI CCNGG 4 cut(s) 182, 229, 864, 872
SfaNI GCATC 1 cut(s) 595
SinI GGWCC 1 cut(s) 154
SmiMI CAYNNNNRTG 1 cut(s) 97
Sse9I AATT 4 cut(s) 548, 763, 1027, 1048
SsiI CCGC 8 cut(s) 143, 194, 221, 344, 420, 470, 1137, 1165
SspMI CTAG 2 cut(s) 650, 1175
StyD4I CCNGG 4 cut(s) 180, 227, 862, 870
StyI CCWWGG 1 cut(s) 664
TaaI ACNGT 3 cut(s) 446, 566, 962
TaiI ACGT 1 cut(s) 303
TaqI TCGA 2 cut(s) 177, 692
TasI AATT 4 cut(s) 548, 763, 1027, 1048
TatI WGTACW 1 cut(s) 996
TauI GCSGC 3 cut(s) 146, 196, 224
TfiI GAWTC 1 cut(s) 311
Tru1I TTAA 2 cut(s) 107, 411
Tru9I TTAA 2 cut(s) 107, 411
TscAI CASTG 1 cut(s) 519
TseI GCWGC 4 cut(s) 146, 224, 383, 520
TspDTI ATGAA 5 cut(s) 600, 625, 778, 806, 838
TspRI CASTG 1 cut(s) 519
VpaK11BI GGWCC 1 cut(s) 154
XapI RAATTY 3 cut(s) 548, 1027, 1048
XbaI TCTAGA 2 cut(s) 649, 1174
XceI RCATGY 1 cut(s) 250
XspI CTAG 2 cut(s) 650, 1175
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.