RchiOBHm_Chr3g0492531

Adipocyte plasma membrane-associated

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_chinensis
3
OG0000797
Physical Location & Seq
Forward (+)
39312637 .. 39313188
552 bp
Loading structure...
UTR
Exon/CDS
Intron
PRQ45542

Sequence Viewer

Length: 411 bp
ATGGCCATAGACATGGGTTATAACCAAATGTGGGATATACTAAATACTAATCAGGGACTACTGAGAATAGTTAAGGATGGAGTAGTGGAGCTGCCGATAGATGAGGCTGAGGGTGTAAAATTCAAGCTAACAGATTGTGTAGATGACTTTCTAGAGGGCAGACCCTATGGTAGGTTACTGAGCTACAATCCATTGACCAAAGAGACCAAAGTGCTTGTCCGCAACCTCTACTGTGCTAATGGAGTAGCACTCTCTCCAGATCAGAATTATGTGATCTTTTGCGAAACTTTCATGAGAAGATGTAGAAACTACTACCTGCAAAGCGAGAAGAAAGGGAGCATAGAGAACTTCATTGACAACTTCCCAGGCTGTCCGGATAATATACGATATGATGGGGAAGGACATTACTAG
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
GO:0003674 GO:0003824 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005783 GO:0012505 GO:0016020 GO:0016787 GO:0016788 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044424 GO:0044444 GO:0044464
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
Str_synth

Protein Analysis

136

Amino Acids

15.69

Weight (kDa)

4.86

Isoelectric Point (pI)

32.26

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
Str_synth PF03088 40 - 108 3.2e-22 Strictosidine synthase
SGL PF08450 52 - 136 2.5e-06 SMP-30/Gluconolactonase/LRE-like region
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AanI TTATAA 1 cut(s) 21
Acc36I ACCTGC 1 cut(s) 324
AccIII TCCGGA 1 cut(s) 373
AciI CCGC 1 cut(s) 220
AcoI YGGCCR 1 cut(s) 3
AcsI RAATTY 1 cut(s) 119
AfiI CCNNNNNNNGG 2 cut(s) 31, 171
AgsI TTSAA 1 cut(s) 124
AjnI CCWGG 1 cut(s) 364
AluBI AGCT 3 cut(s) 91, 127, 183
AluI AGCT 3 cut(s) 91, 127, 183
Alw26I GTCTC 1 cut(s) 197
Aor13HI TCCGGA 1 cut(s) 373
AoxI GGCC 1 cut(s) 3
ApeKI GCWGC 1 cut(s) 91
ApoI RAATTY 1 cut(s) 119
ArsI GACNNNNNNTTYG 2 cut(s) 201, 233
BalI TGGCCA 1 cut(s) 5
BbvCI CCTCAGC 1 cut(s) 108
BbvI GCAGC 1 cut(s) 78
BccI CCATC 2 cut(s) 71, 386
BciT130I CCWGG 1 cut(s) 366
BcoDI GTCTC 1 cut(s) 197
BfaI CTAG 2 cut(s) 152, 409
BfuAI ACCTGC 1 cut(s) 324
BisI GCNGC 1 cut(s) 92
BlsI GCNGC 1 cut(s) 93
Bme1390I CCNGG 1 cut(s) 366
BmrFI CCNGG 1 cut(s) 366
BplI GAGNNNNNCTC 2 cut(s) 234, 266
BpmI CTGGAG 1 cut(s) 240
Bpu10I CCTNAGC 1 cut(s) 108
BsaI GGTCTC 1 cut(s) 197
BsaJI CCNNGG 1 cut(s) 364
BsaWI WCCGGW 1 cut(s) 373
Bsc4I CCNNNNNNNGG 2 cut(s) 31, 171
BseAI TCCGGA 1 cut(s) 373
BseBI CCWGG 1 cut(s) 366
BseDI CCNNGG 1 cut(s) 364
BseGI GGATG 1 cut(s) 82
BseLI CCNNNNNNNGG 2 cut(s) 31, 171
BseMII CTCAG 3 cut(s) 53, 99, 170
BseXI GCAGC 1 cut(s) 78
BshFI GGCC 1 cut(s) 5
BsiSI CCGG 1 cut(s) 374
BslFI GGGAC 1 cut(s) 69
BslI CCNNNNNNNGG 2 cut(s) 31, 171
BsmAI GTCTC 1 cut(s) 197
BsmFI GGGAC 1 cut(s) 69
BsnI GGCC 1 cut(s) 5
Bso31I GGTCTC 1 cut(s) 197
Bsp13I TCCGGA 1 cut(s) 373
Bsp143I GATC 2 cut(s) 259, 273
BspACI CCGC 1 cut(s) 220
BspANI GGCC 1 cut(s) 5
BspCNI CTCAG 3 cut(s) 54, 100, 171
BspEI TCCGGA 1 cut(s) 373
BspHI TCATGA 1 cut(s) 291
BspMI ACCTGC 1 cut(s) 324
BspTNI GGTCTC 1 cut(s) 197
BssECI CCNNGG 1 cut(s) 364
BssMI GATC 2 cut(s) 259, 273
Bst2UI CCWGG 1 cut(s) 366
Bst4CI ACNGT 1 cut(s) 233
BstDEI CTNAG 3 cut(s) 62, 108, 179
BstENI CCTNNNNNAGG 1 cut(s) 169
BstF5I GGATG 1 cut(s) 82
BstKTI GATC 2 cut(s) 262, 276
BstMAI GTCTC 1 cut(s) 197
BstMBI GATC 2 cut(s) 259, 273
BstNI CCWGG 1 cut(s) 366
BstSCI CCNGG 1 cut(s) 364
BstV1I GCAGC 1 cut(s) 78
BstXI CCANNNNNNTGG 1 cut(s) 13
BsuRI GGCC 1 cut(s) 5
BtsCI GGATG 1 cut(s) 82
BveI ACCTGC 1 cut(s) 324
CciI TCATGA 1 cut(s) 291
CviAII CATG 2 cut(s) 13, 292
CviJI RGCY 6 cut(s) 5, 91, 107, 127, 183, 369
CviKI_1 RGCY 6 cut(s) 5, 91, 107, 127, 183, 369
DdeI CTNAG 3 cut(s) 62, 108, 179
DpnI GATC 2 cut(s) 261, 275
DpnII GATC 2 cut(s) 259, 273
EaeI YGGCCR 1 cut(s) 3
Eco31I GGTCTC 1 cut(s) 197
EcoNI CCTNNNNNAGG 1 cut(s) 169
EcoRII CCWGG 1 cut(s) 364
FaeI CATG 2 cut(s) 16, 295
FaqI GGGAC 1 cut(s) 69
FatI CATG 2 cut(s) 12, 291
Fnu4HI GCNGC 1 cut(s) 92
FokI GGATG 1 cut(s) 89
Fsp4HI GCNGC 1 cut(s) 92
FspBI CTAG 2 cut(s) 152, 409
GluI GCNGC 1 cut(s) 92
GsuI CTGGAG 1 cut(s) 240
HaeIII GGCC 1 cut(s) 5
HapII CCGG 1 cut(s) 374
Hin1II CATG 2 cut(s) 16, 295
HpaII CCGG 1 cut(s) 374
Hpy188I TCNGA 1 cut(s) 264
Hpy188III TCNNGA 4 cut(s) 152, 257, 292, 374
HpyAV CCTTC 1 cut(s) 392
HpyCH4III ACNGT 1 cut(s) 233
HpyCH4V TGCA 1 cut(s) 319
HpyF3I CTNAG 3 cut(s) 62, 108, 179
Hsp92II CATG 2 cut(s) 16, 295
Kpn2I TCCGGA 1 cut(s) 373
Kzo9I GATC 2 cut(s) 259, 273
LmnI GCTCC 2 cut(s) 88, 336
LpnPI CCDG 6 cut(s) 38, 270, 329, 351, 378, 387
Lsp1109I GCAGC 1 cut(s) 78
MaeI CTAG 2 cut(s) 152, 409
MaeIII GTNAC 1 cut(s) 174
MalI GATC 2 cut(s) 261, 275
MboI GATC 2 cut(s) 259, 273
MboII GAAGA 2 cut(s) 309, 340
MlsI TGGCCA 1 cut(s) 5
MluCI AATT 2 cut(s) 119, 265
MluNI TGGCCA 1 cut(s) 5
MnlI CCTC 4 cut(s) 97, 103, 148, 236
Mox20I TGGCCA 1 cut(s) 5
MroI TCCGGA 1 cut(s) 373
MscI TGGCCA 1 cut(s) 5
MseI TTAA 1 cut(s) 72
MslI CAYNNNNRTG 1 cut(s) 11
Msp20I TGGCCA 1 cut(s) 5
MspI CCGG 1 cut(s) 374
MspR9I CCNGG 1 cut(s) 366
MvaI CCWGG 1 cut(s) 366
NdeII GATC 2 cut(s) 259, 273
NlaIII CATG 2 cut(s) 16, 295
PagI TCATGA 1 cut(s) 291
PkrI GCNGC 1 cut(s) 93
PsiI TTATAA 1 cut(s) 21
Psp6I CCWGG 1 cut(s) 364
PspGI CCWGG 1 cut(s) 364
RseI CAYNNNNRTG 1 cut(s) 11
SaqAI TTAA 1 cut(s) 72
SatI GCNGC 1 cut(s) 92
Sau3AI GATC 2 cut(s) 259, 273
ScrFI CCNGG 1 cut(s) 366
SetI ASST 6 cut(s) 93, 129, 176, 185, 228, 318
SmiMI CAYNNNNRTG 1 cut(s) 11
Sse9I AATT 2 cut(s) 119, 265
SsiI CCGC 1 cut(s) 220
SspMI CTAG 2 cut(s) 152, 409
StyD4I CCNGG 1 cut(s) 364
TaaI ACNGT 1 cut(s) 233
TasI AATT 2 cut(s) 119, 265
Tru1I TTAA 1 cut(s) 72
Tru9I TTAA 1 cut(s) 72
TseI GCWGC 1 cut(s) 91
TspDTI ATGAA 2 cut(s) 280, 340
XagI CCTNNNNNAGG 1 cut(s) 169
XapI RAATTY 1 cut(s) 119
XbaI TCTAGA 1 cut(s) 151
XspI CTAG 2 cut(s) 152, 409
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.