Rw3G026840

Adipocyte plasma membrane-associated

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_wichuraiana
Chr3
OG0000797
Physical Location & Seq
Forward (+)
37127439 .. 37139019
11581 bp
Loading structure...
UTR
Exon/CDS
Intron
Rw3G026840.1

Sequence Viewer

Length: 960 bp
ATGCTCAAAGAGTCGGAGTTTTTGGGTGTTGGAACTTTAGCAGGGCCAGAAGACGTTGCTTATGATTCCAAGTCGGGACTCATTTACACGGGATGTGCGGACGGGTGGATCAAGCGAGTCAAACTGAACGAGTCGGCTGATGACTCGGTGGTGGAGAACTGGGTTAATACCGGCGGGAGACCACTCGGACTCGCTCACGAACATGGCGGAAAGCTTTTGGTAGCTGACGCGGAAAAGGGACTATTGAGAATAGCTGAGGATGGAGCAGTGGAGCTGCTGACGGATGAGGCTGAGGGTGTAAAATTCAAGCTAACAAATTGTGTAGATGTAGCGAAAGATGGTATGATTTACTTCACAGATGCTTCATATAAATACAGCTTACAAGACTTCATCTGGGACTTTCTAGAGGGCAGACCCCATGGTAGGTTACTAAGCTACAATCCATTTACCAAAGAGACCAAAGTGCTCATTCGCAACCTCTTCTTTGCTAATGGAGTAGCACTCTCTCCAGATCAGAATTATGTGATCTTCTGCGAAACTTTCATGAAAAGATGTAGAAAGTACTACCTACAAGGCGAGAAGAAAGGGAGCATAGAGAACTTCATTGACAACTTGCCAGGCTCTCCGGATAATATACGATATGATGGGGAAGGCCATTACTGGATCGCAATACCTATGGGGACTTCAACTATTTTGGATCTAGCACTTAGGTACCCTTTTATCCTAAAAGGGCTGGCAATCGTGGAGAAGTATATAGTGAGCAAACCATATAAGGAGAAGAATTCTGGTGTACTTGCTGTGAACCTGGAAGGGGAACCTACTGCCCATTATTTTGATCCAAATTTGTCACTCATTACAAGTGGGATCAAGATCGGAAATTACCTCTACTGTGGCTCCGTTCTCAATCCATACATTATCCGCCTAGATCTGGAACAACATCCTGCACATGCCACTACTTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
GO:0003674 GO:0003824 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005783 GO:0012505 GO:0016020 GO:0016787 GO:0016788 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044424 GO:0044444 GO:0044464
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
Str_synth

Protein Analysis

319

Amino Acids

35.53

Weight (kDa)

5.36

Isoelectric Point (pI)

23.64

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
SSL_N PF20067 2 - 40 1.4e-07 Strictosidine synthase-like, N-terminal
SGL PF08450 38 - 228 2.2e-14 SMP-30/Gluconolactonase/LRE-like region
Str_synth PF03088 106 - 192 2e-33 Strictosidine synthase
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
Acc65I GGTACC 1 cut(s) 711
AccB1I GGYRCC 1 cut(s) 711
AccII CGCG 1 cut(s) 230
AccIII TCCGGA 1 cut(s) 625
AciI CCGC 5 cut(s) 98, 174, 207, 230, 919
AclWI GGATC 5 cut(s) 116, 671, 705, 830, 872
AcsI RAATTY 3 cut(s) 302, 781, 841
AfaI GTAC 3 cut(s) 563, 713, 792
AfiI CCNNNNNNNGG 3 cut(s) 423, 811, 928
AgsI TTSAA 2 cut(s) 307, 687
AjnI CCWGG 2 cut(s) 616, 804
AluBI AGCT 7 cut(s) 214, 224, 254, 274, 310, 378, 435
AluI AGCT 7 cut(s) 214, 224, 254, 274, 310, 378, 435
Alw21I GWGCWC 1 cut(s) 468
Alw26I GTCTC 2 cut(s) 172, 449
AlwI GGATC 5 cut(s) 116, 671, 705, 830, 872
Aor13HI TCCGGA 1 cut(s) 625
AoxI GGCC 2 cut(s) 44, 652
ApeKI GCWGC 1 cut(s) 274
ApoI RAATTY 3 cut(s) 302, 781, 841
Asp718I GGTACC 1 cut(s) 711
AspS9I GGNCC 1 cut(s) 44
BaeI ACNNNNGTAYC 2 cut(s) 695, 728
BanI GGYRCC 1 cut(s) 711
BbsI GAAGAC 1 cut(s) 57
Bbv12I GWGCWC 1 cut(s) 468
BbvCI CCTCAGC 2 cut(s) 255, 291
BbvI GCAGC 1 cut(s) 261
BccI CCATC 3 cut(s) 254, 332, 638
BciT130I CCWGG 2 cut(s) 618, 806
BcoDI GTCTC 2 cut(s) 172, 449
BfaI CTAG 3 cut(s) 404, 701, 923
BglII AGATCT 1 cut(s) 925
BisI GCNGC 1 cut(s) 275
BlsI GCNGC 1 cut(s) 276
BmcAI AGTACT 1 cut(s) 563
Bme1390I CCNGG 2 cut(s) 618, 806
BmgT120I GGNCC 1 cut(s) 44
BmiI GGNNCC 3 cut(s) 713, 816, 895
BmrFI CCNGG 2 cut(s) 618, 806
BmrI ACTGGG 1 cut(s) 169
BmsI GCATC 1 cut(s) 349
BmuI ACTGGG 1 cut(s) 169
BpiI GAAGAC 1 cut(s) 57
BplI GAGNNNNNCTC 2 cut(s) 486, 518
BpmI CTGGAG 1 cut(s) 492
Bpu10I CCTNAGC 2 cut(s) 255, 291
BsaBI GATNNNNATC 1 cut(s) 869
BsaI GGTCTC 2 cut(s) 172, 449
BsaJI CCNNGG 1 cut(s) 418
BsaWI WCCGGW 1 cut(s) 625
BsaXI ACNNNNNCTCC 2 cut(s) 878, 908
Bsc4I CCNNNNNNNGG 3 cut(s) 423, 811, 928
Bse118I RCCGGY 1 cut(s) 170
Bse1I ACTGG 2 cut(s) 164, 665
Bse8I GATNNNNATC 1 cut(s) 869
BseAI TCCGGA 1 cut(s) 625
BseBI CCWGG 2 cut(s) 618, 806
BseDI CCNNGG 1 cut(s) 418
BseGI GGATG 4 cut(s) 98, 265, 289, 937
BseJI GATNNNNATC 1 cut(s) 869
BseLI CCNNNNNNNGG 3 cut(s) 423, 811, 928
BseMII CTCAG 2 cut(s) 246, 282
BseNI ACTGG 2 cut(s) 164, 665
BseXI GCAGC 1 cut(s) 261
BsgI GTGCAG 1 cut(s) 927
Bsh1236I CGCG 1 cut(s) 230
BshFI GGCC 2 cut(s) 46, 654
BshNI GGYRCC 1 cut(s) 711
BsiHKAI GWGCWC 1 cut(s) 468
BsiSI CCGG 2 cut(s) 171, 626
BslFI GGGAC 4 cut(s) 90, 252, 410, 694
BslI CCNNNNNNNGG 3 cut(s) 423, 811, 928
BsmAI GTCTC 2 cut(s) 172, 449
BsmFI GGGAC 4 cut(s) 90, 252, 410, 694
BsnI GGCC 2 cut(s) 46, 654
Bso31I GGTCTC 2 cut(s) 172, 449
Bsp1286I GDGCHC 1 cut(s) 468
Bsp13I TCCGGA 1 cut(s) 625
Bsp143I GATC 9 cut(s) 108, 511, 525, 663, 697, 835, 864, 870, 925
Bsp19I CCATGG 1 cut(s) 418
BspACI CCGC 5 cut(s) 98, 174, 207, 230, 919
BspANI GGCC 2 cut(s) 46, 654
BspCNI CTCAG 2 cut(s) 247, 283
BspEI TCCGGA 1 cut(s) 625
BspFNI CGCG 1 cut(s) 230
BspHI TCATGA 1 cut(s) 543
BspLI GGNNCC 3 cut(s) 713, 816, 895
BspPI GGATC 5 cut(s) 116, 671, 705, 830, 872
BspT107I GGYRCC 1 cut(s) 711
BspTNI GGTCTC 2 cut(s) 172, 449
BsrFI RCCGGY 1 cut(s) 170
BsrI ACTGG 2 cut(s) 164, 665
BssAI RCCGGY 1 cut(s) 170
BssECI CCNNGG 1 cut(s) 418
BssMI GATC 9 cut(s) 108, 511, 525, 663, 697, 835, 864, 870, 925
BssT1I CCWWGG 1 cut(s) 418
Bst2UI CCWGG 2 cut(s) 618, 806
Bst4CI ACNGT 1 cut(s) 890
Bst6I CTCTTC 1 cut(s) 485
BstC8I GCNNGC 1 cut(s) 735
BstDEI CTNAG 4 cut(s) 255, 291, 431, 707
BstDSI CCRYGG 1 cut(s) 418
BstF5I GGATG 4 cut(s) 98, 265, 289, 937
BstFNI CGCG 1 cut(s) 230
BstKTI GATC 9 cut(s) 111, 514, 528, 666, 700, 838, 867, 873, 928
BstMAI GTCTC 2 cut(s) 172, 449
BstMBI GATC 9 cut(s) 108, 511, 525, 663, 697, 835, 864, 870, 925
BstNI CCWGG 2 cut(s) 618, 806
BstNSI RCATGY 1 cut(s) 950
BstSCI CCNGG 2 cut(s) 616, 804
BstUI CGCG 1 cut(s) 230
BstV1I GCAGC 1 cut(s) 261
BstV2I GAAGAC 1 cut(s) 57
BstX2I RGATCY 2 cut(s) 697, 925
BstYI RGATCY 2 cut(s) 697, 925
BsuRI GGCC 2 cut(s) 46, 654
BtgI CCRYGG 1 cut(s) 418
BtsCI GGATG 4 cut(s) 98, 265, 289, 937
BtsI GCAGTG 1 cut(s) 273
BtsIMutI CAGTG 1 cut(s) 273
Cac8I GCNNGC 1 cut(s) 735
CciI TCATGA 1 cut(s) 543
Cfr10I RCCGGY 1 cut(s) 170
Cfr13I GGNCC 1 cut(s) 44
CseI GACGC 1 cut(s) 236
Csp6I GTAC 3 cut(s) 562, 712, 791
CviAII CATG 4 cut(s) 203, 419, 544, 947
CviQI GTAC 3 cut(s) 562, 712, 791
DdeI CTNAG 4 cut(s) 255, 291, 431, 707
DpnI GATC 9 cut(s) 110, 513, 527, 665, 699, 837, 866, 872, 927
DpnII GATC 9 cut(s) 108, 511, 525, 663, 697, 835, 864, 870, 925
Eam1104I CTCTTC 1 cut(s) 485
EarI CTCTTC 1 cut(s) 485
EciI GGCGGA 2 cut(s) 222, 908
Eco130I CCWWGG 1 cut(s) 418
Eco31I GGTCTC 2 cut(s) 172, 449
EcoRI GAATTC 1 cut(s) 781
EcoRII CCWGG 2 cut(s) 616, 804
EcoT14I CCWWGG 1 cut(s) 418
ErhI CCWWGG 1 cut(s) 418
FaeI CATG 4 cut(s) 206, 422, 547, 950
FaqI GGGAC 4 cut(s) 90, 252, 410, 694
FatI CATG 4 cut(s) 202, 418, 543, 946
FauI CCCGC 1 cut(s) 167
Fnu4HI GCNGC 1 cut(s) 275
FokI GGATG 4 cut(s) 105, 272, 296, 924
Fsp4HI GCNGC 1 cut(s) 275
FspBI CTAG 3 cut(s) 404, 701, 923
GluI GCNGC 1 cut(s) 275
GsuI CTGGAG 1 cut(s) 492
HaeIII GGCC 2 cut(s) 46, 654
HapII CCGG 2 cut(s) 171, 626
HgaI GACGC 1 cut(s) 236
Hin1II CATG 4 cut(s) 206, 422, 547, 950
HindIII AAGCTT 1 cut(s) 212
HinfI GANTC 7 cut(s) 11, 65, 78, 117, 131, 143, 189
HpaII CCGG 2 cut(s) 171, 626
Hpy166II GTNNAC 2 cut(s) 791, 802
Hpy188I TCNGA 4 cut(s) 16, 188, 516, 875
Hpy188III TCNNGA 8 cut(s) 75, 197, 404, 509, 544, 626, 868, 929
Hpy8I GTNNAC 2 cut(s) 791, 802
HpyAV CCTTC 2 cut(s) 644, 803
HpyCH4III ACNGT 1 cut(s) 890
HpyCH4IV ACGT 1 cut(s) 54
HpyCH4V TGCA 1 cut(s) 944
HpyF3I CTNAG 4 cut(s) 255, 291, 431, 707
HpySE526I ACGT 1 cut(s) 54
Hsp92II CATG 4 cut(s) 206, 422, 547, 950
Kpn2I TCCGGA 1 cut(s) 625
KpnI GGTACC 1 cut(s) 715
Kzo9I GATC 9 cut(s) 108, 511, 525, 663, 697, 835, 864, 870, 925
LmnI GCTCC 4 cut(s) 263, 271, 588, 899
Lsp1109I GCAGC 1 cut(s) 261
LweI GCATC 1 cut(s) 349
MaeI CTAG 3 cut(s) 404, 701, 923
MaeII ACGT 1 cut(s) 54
MaeIII GTNAC 2 cut(s) 426, 846
MalI GATC 9 cut(s) 110, 513, 527, 665, 699, 837, 866, 872, 927
MboI GATC 9 cut(s) 108, 511, 525, 663, 697, 835, 864, 870, 925
MboII GAAGA 5 cut(s) 62, 472, 520, 592, 790
MflI RGATCY 2 cut(s) 697, 925
MhlI GDGCHC 1 cut(s) 468
MluCI AATT 6 cut(s) 302, 316, 517, 781, 841, 877
MlyI GAGTC 6 cut(s) 20, 72, 126, 137, 140, 183
MmeI TCCRAC 1 cut(s) 10
MnlI CCTC 6 cut(s) 250, 280, 286, 400, 488, 893
MroI TCCGGA 1 cut(s) 625
MseI TTAA 1 cut(s) 165
MslI CAYNNNNRTG 1 cut(s) 201
MspI CCGG 2 cut(s) 171, 626
MspR9I CCNGG 2 cut(s) 618, 806
MvaI CCWGG 2 cut(s) 618, 806
MvnI CGCG 1 cut(s) 230
NcoI CCATGG 1 cut(s) 418
NdeII GATC 9 cut(s) 108, 511, 525, 663, 697, 835, 864, 870, 925
NlaIII CATG 4 cut(s) 206, 422, 547, 950
NlaIV GGNNCC 3 cut(s) 713, 816, 895
NmuCI GTSAC 1 cut(s) 846
NspI RCATGY 1 cut(s) 950
PagI TCATGA 1 cut(s) 543
PfeI GAWTC 1 cut(s) 65
PkrI GCNGC 1 cut(s) 276
PleI GAGTC 6 cut(s) 19, 72, 125, 137, 139, 183
PpsI GAGTC 6 cut(s) 19, 72, 125, 137, 139, 183
Psp6I CCWGG 2 cut(s) 616, 804
PspGI CCWGG 2 cut(s) 616, 804
PspN4I GGNNCC 3 cut(s) 713, 816, 895
PspPI GGNCC 1 cut(s) 44
PsuI RGATCY 2 cut(s) 697, 925
RsaI GTAC 3 cut(s) 563, 713, 792
RsaNI GTAC 3 cut(s) 562, 712, 791
RseI CAYNNNNRTG 1 cut(s) 201
SaqAI TTAA 1 cut(s) 165
SatI GCNGC 1 cut(s) 275
Sau3AI GATC 9 cut(s) 108, 511, 525, 663, 697, 835, 864, 870, 925
Sau96I GGNCC 1 cut(s) 44
ScaI AGTACT 1 cut(s) 563
SchI GAGTC 6 cut(s) 20, 72, 126, 137, 140, 183
ScrFI CCNGG 2 cut(s) 618, 806
SduI GDGCHC 1 cut(s) 468
SfaNI GCATC 1 cut(s) 349
SmiMI CAYNNNNRTG 1 cut(s) 201
Sse9I AATT 6 cut(s) 302, 316, 517, 781, 841, 877
SsiI CCGC 5 cut(s) 98, 174, 207, 230, 919
SspMI CTAG 3 cut(s) 404, 701, 923
StyD4I CCNGG 2 cut(s) 616, 804
StyI CCWWGG 1 cut(s) 418
TaaI ACNGT 1 cut(s) 890
TaiI ACGT 1 cut(s) 57
TasI AATT 6 cut(s) 302, 316, 517, 781, 841, 877
TatI WGTACW 2 cut(s) 561, 790
TfiI GAWTC 1 cut(s) 65
Tru1I TTAA 1 cut(s) 165
Tru9I TTAA 1 cut(s) 165
TscAI CASTG 1 cut(s) 273
TseFI GTSAC 1 cut(s) 846
TseI GCWGC 1 cut(s) 274
Tsp45I GTSAC 1 cut(s) 846
TspDTI ATGAA 5 cut(s) 354, 379, 532, 560, 592
TspGWI ACGGA 2 cut(s) 296, 886
TspRI CASTG 1 cut(s) 273
XapI RAATTY 3 cut(s) 302, 781, 841
XbaI TCTAGA 1 cut(s) 403
XceI RCATGY 1 cut(s) 950
XspI CTAG 3 cut(s) 404, 701, 923
ZrmI AGTACT 1 cut(s) 563
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.